1OCS | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	132
structure length	131
Chain Sequence	AEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 131 atoms

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131 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sorting protein
source organism	Saccharomyces cerevisiae
publication title	Crystal Structure of the Yeast Phox Homology (Px) Protein Grd19P (Sorting Nexin 3) Complexed to Phosphatidylinositol-3-Phosphate pubmed doi rcsb
molecule keywords	SORTING NEXIN GRD19
total genus	35
structure length	131
sequence length	132
ec nomenclature
pdb deposition date	2003-02-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	1ocsA00

1H6HA 2L73A 4IKBB 2CSKA 4ON3A 4IKBA 2IWLX 3HPBA 4PQPA 3P0CA 1KQ6A 4PZGA 2ETTA 3FOGA 2RAKA 1GD5A 2AR5A 2RAJA 2V6VA 2WWEA 3DYTA 2REDA 1OCSA 2V14A 4HASA 4OXWA 4BGJA 3IQ2A 2I4KA 3LUIA 2CZOA 2DYBA 1O7KA 4PQOA 3HPCX 4IKDA 2RAIA 2REAA 4P2JA 4AKVA 4AZ9A 2YPSA 1KMDA 1XTEA 4P2IA 1OCUA 1XTNA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1H6H A;  2L73 A;  4IKB B;  2CSK A;  4ON3 A;  4IKB A;  2IWL X;  3HPB A;  4PQP A;  3P0C A;  1KQ6 A;  4PZG A;  2ETT A;  3FOG A;  2RAK A;  1GD5 A;  2AR5 A;  2RAJ A;  2V6V A;  2WWE A;  3DYT A;  2RED A;  1OCS A;  2V14 A;  4HAS A;  4OXW A;  4BGJ A;  3IQ2 A;  2I4K A;  3LUI A;  2CZO A;  2DYB A;  1O7K A;  4PQO A;  3HPC X;  4IKD A;  2RAI A;  2REA A;  4P2J A;  4AKV A;  4AZ9 A;  2YPS A;  1KMD A;  1XTE A;  4P2I A;  1OCU A;  1XTN A; 
#chains in the Genus database with same CATH topology
 1H6H A;  2L73 A;  4IKB B;  2CSK A;  4ON3 A;  4IKB A;  2IWL X;  3HPB A;  4PQP A;  3P0C A;  1KQ6 A;  4PZG A;  2ETT A;  3FOG A;  2RAK A;  1GD5 A;  2AR5 A;  2RAJ A;  2V6V A;  2WWE A;  3DYT A;  2RED A;  1OCS A;  2V14 A;  4HAS A;  4OXW A;  4BGJ A;  3IQ2 A;  2I4K A;  3LUI A;  2CZO A;  2DYB A;  1O7K A;  4PQO A;  3HPC X;  4IKD A;  2RAI A;  2REA A;  4P2J A;  4AKV A;  4AZ9 A;  2YPS A;  1KMD A;  1XTE A;  4P2I A;  1OCU A;  1XTN A; 
#chains in the Genus database with same CATH homology
 1H6H A;  2L73 A;  4IKB B;  2CSK A;  4ON3 A;  4IKB A;  2IWL X;  3HPB A;  4PQP A;  3P0C A;  1KQ6 A;  4PZG A;  2ETT A;  3FOG A;  2RAK A;  1GD5 A;  2AR5 A;  2RAJ A;  2V6V A;  2WWE A;  3DYT A;  2RED A;  1OCS A;  2V14 A;  4HAS A;  4OXW A;  4BGJ A;  3IQ2 A;  2I4K A;  3LUI A;  2CZO A;  2DYB A;  1O7K A;  4PQO A;  3HPC X;  4IKD A;  2RAI A;  2REA A;  4P2J A;  4AKV A;  4AZ9 A;  2YPS A;  1KMD A;  1XTE A;  4P2I A;  1OCU A;  1XTN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OCSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations