2RAIA

The px-bar membrane remodeling unit of sorting nexin 9
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
382
structure length
363
Chain Sequence
PGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Homo sapiens
publication title The PX-BAR membrane-remodeling unit of sorting nexin 9
pubmed doi rcsb
molecule keywords Sorting nexin-9
total genus 118
structure length 363
sequence length 382
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2raiA03
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 2raiA02
1OCSA 2D4CA 5C5BB 1OCUA 3PLTA 1XTNA 5C5BA 1O7KA 3ABHA 2YPSA 4I1QA 4P2IA 1Y2OA 3M3WA 2X3XA 1URUA 3HAIA 4OXWA 1ZWWA 4ON3A 2I4KA 3ACOA 4NQIA 4BNEA 2CSKA 2Q12A 4P2JA 3QE6A 2IWLX 1KMDA 2EFLA 1XTEA 4ATMA 2Z0OA 3CAZA 4AKVA 2REDA 2L73A 3HAJA 2Z0VA 3LUIA 2X3VA 4HASA 3Q84A 2REAA 2Z0NA 2RAIA 4BGJA 3SOGA 4H8SA 1KQ6A 4IKBA 2YKTA 2FICA 2V6VA 2V14A 2DYBA 3HAHA 4PQPA 4NSWA 2V0OA 1GD5A 2AR5A 1X04A 4DYLA 1I4LA 3IQ2A 2WWEA 4PQOA 2EFKA 4WPEA 2C08A 3I2WA 2CZOA 3HPCX 2X3WA 4PZGA 3G9GA 2ELBA 3QWEA 4IKBB 3SYVA 3FOGA 1X03A 4IKDA 1WDZA 4WPCA 2Q13A 1I4TA 4AVMA 4FZSA 2RAJA 2D1LA 3HPBA 1I4DA 3P0CA 1I49A 3Q0KA 2RAKA 3QNIA 1H6HA 2ETTA 3DYTA 4DCNC 3LLLA 3OK8A 4AZ9A
chains in the Genus database with same CATH superfamily
1W9MA 2D4CA 3PLTA 2ZXQA 1R34A 3ABHA 2YI8A 2YPSA 2ALWA 4I1QA 1Y2OA 3DX4A 3L3OM 3ACOA 3DX2A 1HXKA 3T49A 2LM0A 2KHOA 4F01A 3ERCC 2YLLA 1KMDA 5FLEX 4B9QA 2EFLA 1XTEA 3DDFA 2QFFA 4AZBA 4HY9A 4JWDA 3ZEDA 5KBPA 4JWEA 3FD9A 2F7RA 1GNTA 2FYVA 4BGJA 3SOGA 3D2EA 1U00A 1SUFA 4H8SA 3D2FA 4IWOA 2Z8YA 2DYBA 3HAHA 4PQPA 3EJSA 1HTYA 3DX1A 4NSWA 2ND1A 1GD5A 4IWPA 1I4LA 2YL8A 3DX3A 3BLBA 2C08A 2CZOA 2OO2A 1R33A 4UDYX 2YIBA 4PZGA 4EZNA 2ND0A 3T46A 1QWUA 4D8JA 4AZHA 2Q13A 3QA8A 2RAJA 3ER8C 3OHXM 3LMFA 2JNSA 3BUBA 1TQWA 4E3CA 1I49A 4H6IA 3CV5A 2YLAA 3VEAA 1H6HA 3KAVA 4F00A 3LLLA 1DKXA 2YL5A 5C5BB 4EZZA 3DX0A 1XTNA 5C5BA 4HYBA 4AZIA 4R5GA 4EZOA 1JQKA 3I01A 2YIAA 3C7NA 4OXWA 4ON3A 4FM3A 3O3NB 3L3PA 4JNEA 3DPQA 3GI7A 2Q12A 1QWNA 5FIGA 2IWLX 4EZYA 4JN4A 4R5LA 1OA0A 2Z0OA 3QNJA 2GF4A 3BUPA 2REDA 4AZCB 2L73A 4M0MA 1YWMA 2Z0VA 4AZCA 1TQVA 3BVUA 1OA1A 2YL6A 1GN9A 3I04A 1KQ6A 4IKBA 1R5EA 4R5IA 2MI7A 2YKTA 2FICA 2V6VA 2V14A 1TQSA 2YI9A 1TQTA 3EJUA 2V0OA 1TQUA 3RV0A 3D52A 4DYLA 4EZTA 1O7DC 2EFKA 3DPPA 1E2UA 2OBLA 1DKYA 2O0I1 1PS3A 3G9GA 2ELBA 1E9VA 1GNLA 3SYVA 1WDZA 4WPCA 4JWCA 1O7DB 3EJQA 1I4TA 4UDXX 4EZSA 2D1LA 1DKZA 3ER9B 2YL9A 4EZXA 1MJGA 1UPXA 2OZNB 2PMRA 3QNIA 3DYTA 3OK8A 4JLCA 1OCUA 3EJPA 1O7KA 4HR1B 4HR1A 4P2IA 3M3WA 2X3XA 2F7PA 2I4KA 4NQIA 2F18A 4BNEA 1LQ7A 4AZGA 2F1AA 4P2JA 4EZUA 2OW6A 2F1BA 4FZPA 2LXYA 2EX3B 3BUQA 4ATMA 3O3MB 4R5KA 4EZQA 4IW0A 3LVTA 3T4AG 3HAJA 3B53X 2X3VA 4IM2A 3F7WA 4IWQA 2REAA 2Z0NA 3DDGA 3B52X 4PO2A 4KIKA 3UITA 3BVXA 3IQ2A 2WWEA 3I39X 3I2WA 3A98A 3HPCX 3D50A 3CZNA 4IKBB 4JNFA 3FOGA 2QKWA 4IKDA 3D4YA 4H6HA 4AZ6A 1SU7A 3D51A 4FZSA 4AZ7A 3P0CA 2OBMA 2GAFD 3CZSA 3Q0KA 3T47A 3BVWA 4IM0A 3BUIA 4AZ9A 3BVVA 1OCSA 1OAOA 1QX1A 4EZVA 2WYHA 2GA9D 3BVTA 5TKYA 3OWGA 1URUA 3HAIA 1ZWWA 1E1DA 3VKHA 2CSKA 4EZRA 2JNKA 1ZYLA 2EWFA 4E81A 2F7QA 3QE6A 4EZPA 2X5CA 3CAZA 4AKVA 2OW7A 3LUIA 4HASA 2WINM 3Q84A 5E84A 3D4ZA 2RAIA 4IM3A 2NCZA 3T48A 1SU6A 1HWWA 4NPHA 4EZWA 3B51X 2AR5A 1X04A 2WYIA 4PQOA 3BUDA 3VEBA 4WPEA 3CVRA 4FZOA 3KAWA 4R5JA 2PY6A 4JL9A 2X3WA 3QWEA 3KDRA 1X03A 4JWIA 2F7OA 4KIKB 2YIVX 3RV1A 3EJRA 4AZ5A 3O3OB 3EJTA 4AVMA 3RPMA 2QXLA 4G6QA 2N3KA 3HPBA 1I4DA 1SU8A 3DPOA 2RAKA 2RT6A 2ETTA 4DCNC 3CKDA
chains in the Genus database with same CATH topology
1OCSA 2D4CA 5C5BB 1OCUA 3PLTA 1XTNA 5C5BA 1O7KA 3ABHA 2YPSA 4I1QA 4P2IA 1Y2OA 3M3WA 2X3XA 1URUA 3HAIA 4OXWA 1ZWWA 4ON3A 2I4KA 3ACOA 4NQIA 4BNEA 2CSKA 2Q12A 4P2JA 3QE6A 2IWLX 1KMDA 2EFLA 1XTEA 4ATMA 2Z0OA 3CAZA 4AKVA 2REDA 2L73A 3HAJA 2Z0VA 3LUIA 2X3VA 4HASA 3Q84A 2REAA 2Z0NA 2RAIA 4BGJA 3SOGA 4H8SA 1KQ6A 4IKBA 2YKTA 2FICA 2V6VA 2V14A 2DYBA 3HAHA 4PQPA 4NSWA 2V0OA 1GD5A 2AR5A 1X04A 4DYLA 1I4LA 3IQ2A 2WWEA 4PQOA 2EFKA 4WPEA 2C08A 3I2WA 2CZOA 3HPCX 2X3WA 4PZGA 3G9GA 2ELBA 3QWEA 4IKBB 3SYVA 3FOGA 1X03A 4IKDA 1WDZA 4WPCA 2Q13A 1I4TA 4AVMA 4FZSA 2RAJA 2D1LA 3HPBA 1I4DA 3P0CA 1I49A 3Q0KA 2RAKA 3QNIA 1H6HA 2ETTA 3DYTA 4DCNC 3LLLA 3OK8A 4AZ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OCS A;  2D4C A;  5C5B B;  1OCU A;  3PLT A;  1XTN A;  5C5B A;  1O7K A;  3ABH A;  2YPS A;  4I1Q A;  4P2I A;  1Y2O A;  3M3W A;  2X3X A;  1URU A;  3HAI A;  4OXW A;  1ZWW A;  4ON3 A;  2I4K A;  3ACO A;  4NQI A;  4BNE A;  2CSK A;  2Q12 A;  4P2J A;  3QE6 A;  2IWL X;  1KMD A;  2EFL A;  1XTE A;  4ATM A;  2Z0O A;  3CAZ A;  4AKV A;  2RED A;  2L73 A;  3HAJ A;  2Z0V A;  3LUI A;  2X3V A;  4HAS A;  3Q84 A;  2REA A;  2Z0N A;  2RAI A;  4BGJ A;  3SOG A;  4H8S A;  1KQ6 A;  4IKB A;  2YKT A;  2FIC A;  2V6V A;  2V14 A;  2DYB A;  3HAH A;  4PQP A;  4NSW A;  2V0O A;  1GD5 A;  2AR5 A;  1X04 A;  4DYL A;  1I4L A;  3IQ2 A;  2WWE A;  4PQO A;  2EFK A;  4WPE A;  2C08 A;  3I2W A;  2CZO A;  3HPC X;  2X3W A;  4PZG A;  3G9G A;  2ELB A;  3QWE A;  4IKB B;  3SYV A;  3FOG A;  1X03 A;  4IKD A;  1WDZ A;  4WPC A;  2Q13 A;  1I4T A;  4AVM A;  4FZS A;  2RAJ A;  2D1L A;  3HPB A;  1I4D A;  3P0C A;  1I49 A;  3Q0K A;  2RAK A;  3QNI A;  1H6H A;  2ETT A;  3DYT A;  4DCN C;  3LLL A;  3OK8 A;  4AZ9 A; 
#chains in the Genus database with same CATH topology
 1W9M A;  2D4C A;  3PLT A;  2ZXQ A;  1R34 A;  3ABH A;  2YI8 A;  2YPS A;  2ALW A;  4I1Q A;  1Y2O A;  3DX4 A;  3L3O M;  3ACO A;  3DX2 A;  1HXK A;  3T49 A;  2LM0 A;  2KHO A;  4F01 A;  3ERC C;  2YLL A;  1KMD A;  5FLE X;  4B9Q A;  2EFL A;  1XTE A;  3DDF A;  2QFF A;  4AZB A;  4HY9 A;  4JWD A;  3ZED A;  5KBP A;  4JWE A;  3FD9 A;  2F7R A;  1GNT A;  2FYV A;  4BGJ A;  3SOG A;  3D2E A;  1U00 A;  1SUF A;  4H8S A;  3D2F A;  4IWO A;  2Z8Y A;  2DYB A;  3HAH A;  4PQP A;  3EJS A;  1HTY A;  3DX1 A;  4NSW A;  2ND1 A;  1GD5 A;  4IWP A;  1I4L A;  2YL8 A;  3DX3 A;  3BLB A;  2C08 A;  2CZO A;  2OO2 A;  1R33 A;  4UDY X;  2YIB A;  4PZG A;  4EZN A;  2ND0 A;  3T46 A;  1QWU A;  4D8J A;  4AZH A;  2Q13 A;  3QA8 A;  2RAJ A;  3ER8 C;  3OHX M;  3LMF A;  2JNS A;  3BUB A;  1TQW A;  4E3C A;  1I49 A;  4H6I A;  3CV5 A;  2YLA A;  3VEA A;  1H6H A;  3KAV A;  4F00 A;  3LLL A;  1DKX A;  2YL5 A;  5C5B B;  4EZZ A;  3DX0 A;  1XTN A;  5C5B A;  4HYB A;  4AZI A;  4R5G A;  4EZO A;  1JQK A;  3I01 A;  2YIA A;  3C7N A;  4OXW A;  4ON3 A;  4FM3 A;  3O3N B;  3L3P A;  4JNE A;  3DPQ A;  3GI7 A;  2Q12 A;  1QWN A;  5FIG A;  2IWL X;  4EZY A;  4JN4 A;  4R5L A;  1OA0 A;  2Z0O A;  3QNJ A;  2GF4 A;  3BUP A;  2RED A;  4AZC B;  2L73 A;  4M0M A;  1YWM A;  2Z0V A;  4AZC A;  1TQV A;  3BVU A;  1OA1 A;  2YL6 A;  1GN9 A;  3I04 A;  1KQ6 A;  4IKB A;  1R5E A;  4R5I A;  2MI7 A;  2YKT A;  2FIC A;  2V6V A;  2V14 A;  1TQS A;  2YI9 A;  1TQT A;  3EJU A;  2V0O A;  1TQU A;  3RV0 A;  3D52 A;  4DYL A;  4EZT A;  1O7D C;  2EFK A;  3DPP A;  1E2U A;  2OBL A;  1DKY A;  2O0I 1;  1PS3 A;  3G9G A;  2ELB A;  1E9V A;  1GNL A;  3SYV A;  1WDZ A;  4WPC A;  4JWC A;  1O7D B;  3EJQ A;  1I4T A;  4UDX X;  4EZS A;  2D1L A;  1DKZ A;  3ER9 B;  2YL9 A;  4EZX A;  1MJG A;  1UPX A;  2OZN B;  2PMR A;  3QNI A;  3DYT A;  3OK8 A;  4JLC A;  1OCU A;  3EJP A;  1O7K A;  4HR1 B;  4HR1 A;  4P2I A;  3M3W A;  2X3X A;  2F7P A;  2I4K A;  4NQI A;  2F18 A;  4BNE A;  1LQ7 A;  4AZG A;  2F1A A;  4P2J A;  4EZU A;  2OW6 A;  2F1B A;  4FZP A;  2LXY A;  2EX3 B;  3BUQ A;  4ATM A;  3O3M B;  4R5K A;  4EZQ A;  4IW0 A;  3LVT A;  3T4A G;  3HAJ A;  3B53 X;  2X3V A;  4IM2 A;  3F7W A;  4IWQ A;  2REA A;  2Z0N A;  3DDG A;  3B52 X;  4PO2 A;  4KIK A;  3UIT A;  3BVX A;  3IQ2 A;  2WWE A;  3I39 X;  3I2W A;  3A98 A;  3HPC X;  3D50 A;  3CZN A;  4IKB B;  4JNF A;  3FOG A;  2QKW A;  4IKD A;  3D4Y A;  4H6H A;  4AZ6 A;  1SU7 A;  3D51 A;  4FZS A;  4AZ7 A;  3P0C A;  2OBM A;  2GAF D;  3CZS A;  3Q0K A;  3T47 A;  3BVW A;  4IM0 A;  3BUI A;  4AZ9 A;  3BVV A;  1OCS A;  1OAO A;  1QX1 A;  4EZV A;  2WYH A;  2GA9 D;  3BVT A;  5TKY A;  3OWG A;  1URU A;  3HAI A;  1ZWW A;  1E1D A;  3VKH A;  2CSK A;  4EZR A;  2JNK A;  1ZYL A;  2EWF A;  4E81 A;  2F7Q A;  3QE6 A;  4EZP A;  2X5C A;  3CAZ A;  4AKV A;  2OW7 A;  3LUI A;  4HAS A;  2WIN M;  3Q84 A;  5E84 A;  3D4Z A;  2RAI A;  4IM3 A;  2NCZ A;  3T48 A;  1SU6 A;  1HWW A;  4NPH A;  4EZW A;  3B51 X;  2AR5 A;  1X04 A;  2WYI A;  4PQO A;  3BUD A;  3VEB A;  4WPE A;  3CVR A;  4FZO A;  3KAW A;  4R5J A;  2PY6 A;  4JL9 A;  2X3W A;  3QWE A;  3KDR A;  1X03 A;  4JWI A;  2F7O A;  4KIK B;  2YIV X;  3RV1 A;  3EJR A;  4AZ5 A;  3O3O B;  3EJT A;  4AVM A;  3RPM A;  2QXL A;  4G6Q A;  2N3K A;  3HPB A;  1I4D A;  1SU8 A;  3DPO A;  2RAK A;  2RT6 A;  2ETT A;  4DCN C;  3CKD A; 
#chains in the Genus database with same CATH homology
 1OCS A;  2D4C A;  5C5B B;  1OCU A;  3PLT A;  1XTN A;  5C5B A;  1O7K A;  3ABH A;  2YPS A;  4I1Q A;  4P2I A;  1Y2O A;  3M3W A;  2X3X A;  1URU A;  3HAI A;  4OXW A;  1ZWW A;  4ON3 A;  2I4K A;  3ACO A;  4NQI A;  4BNE A;  2CSK A;  2Q12 A;  4P2J A;  3QE6 A;  2IWL X;  1KMD A;  2EFL A;  1XTE A;  4ATM A;  2Z0O A;  3CAZ A;  4AKV A;  2RED A;  2L73 A;  3HAJ A;  2Z0V A;  3LUI A;  2X3V A;  4HAS A;  3Q84 A;  2REA A;  2Z0N A;  2RAI A;  4BGJ A;  3SOG A;  4H8S A;  1KQ6 A;  4IKB A;  2YKT A;  2FIC A;  2V6V A;  2V14 A;  2DYB A;  3HAH A;  4PQP A;  4NSW A;  2V0O A;  1GD5 A;  2AR5 A;  1X04 A;  4DYL A;  1I4L A;  3IQ2 A;  2WWE A;  4PQO A;  2EFK A;  4WPE A;  2C08 A;  3I2W A;  2CZO A;  3HPC X;  2X3W A;  4PZG A;  3G9G A;  2ELB A;  3QWE A;  4IKB B;  3SYV A;  3FOG A;  1X03 A;  4IKD A;  1WDZ A;  4WPC A;  2Q13 A;  1I4T A;  4AVM A;  4FZS A;  2RAJ A;  2D1L A;  3HPB A;  1I4D A;  3P0C A;  1I49 A;  3Q0K A;  2RAK A;  3QNI A;  1H6H A;  2ETT A;  3DYT A;  4DCN C;  3LLL A;  3OK8 A;  4AZ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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