2RAIA

The px-bar membrane remodeling unit of sorting nexin 9
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
382
structure length
363
Chain Sequence
PGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Sorting nexin-9
publication title The PX-BAR membrane-remodeling unit of sorting nexin 9
pubmed doi rcsb
source organism Homo sapiens
total genus 118
structure length 363
sequence length 382
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2raiA03
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 2raiA02
4ATMA 1Y2OA 2ETTA 4P2IA 4IKBB 3G9GA 3CAZA 2IWLX 2FICA 4I1QA 2V6VA 2D1LA 4BNEA 3Q84A 2REAA 3OK8A 1O7KA 2V0OA 1I4LA 2Z0OA 1I49A 3SOGA 2REDA 2Z0VA 1XTEA 1URUA 2Z0NA 3I2WA 4AVMA 3P0CA 4NSWA 3M3WA 4IKDA 4WPCA 3HPCX 5C5BA 2YPSA 3QWEA 4H8SA 1X03A 2X3XA 3LLLA 3HAHA 3QNIA 4PZGA 4NQIA 2RAKA 4PQOA 1KMDA 2X3VA 1X04A 4AKVA 1OCSA 3DYTA 2EFKA 2RAIA 2Q13A 2Q12A 5C5BB 4DYLA 3HPBA 4IKBA 3PLTA 4P2JA 4WPEA 4PQPA 1I4TA 2CZOA 3LUIA 1OCUA 4DCNC 4HASA 1KQ6A 1I4DA 3QE6A 3Q0KA 4ON3A 2WWEA 4OXWA 2DYBA 2I4KA 1XTNA 2RAJA 4BGJA 3ACOA 3HAJA 2AR5A 2C08A 1WDZA 2ELBA 2EFLA 1H6HA 1ZWWA 3IQ2A 2D4CA 2CSKA 3HAIA 4AZ9A 4FZSA 2L73A 2YKTA 2X3WA 3SYVA 1GD5A 3FOGA 2V14A 3ABHA
chains in the Genus database with same CATH superfamily
1TQUA 3ER9B 2ETTA 4FZOA 3CAZA 3BUBA 3O3NB 3VEBA 4JWIA 3KDRA 2FICA 1SU7A 2D1LA 2F7QA 3DX1A 2REAA 2OBMA 1TQWA 1I4LA 2Z0OA 3SOGA 2REDA 4EZOA 4JWDA 4D8JA 3FD9A 2Z0NA 1SU6A 3L3PA 3QWEA 3EJSA 3I01A 3L3OM 3HAHA 4PZGA 1DKZA 1OA1A 2O0I1 3F7WA 2YL9A 4AKVA 4AZ6A 1OCSA 2EFKA 3OWGA 2Q13A 2OW7A 3HPBA 3BUPA 3D51A 3I04A 4HASA 2F7RA 1E1DA 3CZSA 3UITA 2GA9D 1I4DA 3DX0A 4ON3A 4EZRA 2WWEA 4OXWA 2Z8YA 2DYBA 3D4YA 4BGJA 4AZCB 3HAJA 3T4AG 1MJGA 4AZBA 1O7DB 2ZXQA 4EZYA 1UPXA 2EFLA 2F7PA 3EJPA 1H6HA 1LQ7A 1SUFA 3IQ2A 1U00A 3EJQA 4R5LA 2CSKA 4IWOA 2PMRA 2YKTA 2X3WA 2YI8A 2V14A 1Y2OA 2JNKA 1HTYA 1O7DC 4E3CA 4I1QA 2WYHA 4IW0A 3VEAA 4EZTA 2QKWA 2EWFA 2V0OA 4HR1B 3D50A 4FM3A 3LMFA 1XTEA 1URUA 3M3WA 4IKDA 4IWPA 3CZNA 3LLLA 1E9VA 3QNIA 4JWCA 1KMDA 3RPMA 3BVUA 2X3VA 2FYVA 3O3OB 3QA8A 3C7NA 1R33A 2RAIA 2Q12A 4AZCA 2NCZA 2YL5A 5C5BB 4B9QA 1YWMA 2ND0A 4P2JA 2CZOA 3KAWA 3DX4A 4IM2A 2OBLA 2OO2A 4R5JA 3BUQA 3OHXM 3BLBA 2WINM 4F01A 1R5EA 2I4KA 2RAJA 3ACOA 4R5KA 1W9MA 3D4ZA 2EX3B 2KHOA 3CKDA 2RT6A 2QFFA 2C08A 1WDZA 2ELBA 1PS3A 3VKHA 4R5GA 4FZSA 2JNSA 1GD5A 4F00A 4HR1A 3ABHA 1DKYA 3EJTA 1GNTA 2F1BA 4P2IA 4EZXA 3BVXA 3G9GA 4EZPA 3RV1A 2IWLX 5FLEX 4NPHA 4BNEA 3Q84A 1QX1A 3OK8A 5KBPA 1O7KA 4EZVA 3BUIA 4AZ7A 4IM0A 1E2UA 2F1AA 2GF4A 3P0CA 3T49A 4NSWA 4PO2A 5C5BA 4JNEA 2YPSA 1OAOA 2QXLA 1X03A 2X3XA 4UDXX 4IWQA 2RAKA 4H6HA 3O3MB 1X04A 2YIAA 3D2FA 3B52X 3BVWA 2ALWA 4JN4A 2GAFD 3DX2A 3B53X 4IKBA 3PLTA 3CVRA 2LM0A 4WPEA 2N3KA 4PQPA 1TQVA 3D2EA 4UDYX 3LUIA 2YLAA 4JNFA 3EJUA 4DCNC 4KIKA 3A98A 3QE6A 3Q0KA 3D52A 1QWNA 3T48A 2AR5A 3BVVA 5E84A 4EZSA 3DPPA 4AZ5A 2YL8A 1ZWWA 1DKXA 2YI9A 4JWEA 3GI7A 2YL6A 2PY6A 3SYVA 3KAVA 1GNLA 4FZPA 4AZIA 2YIBA 4JLCA 4ATMA 4AZHA 3QNJA 4EZUA 3T47A 4IKBB 1HXKA 1ZYLA 3DX3A 2YIVX 2V6VA 4KIKB 4EZNA 4EZQA 1I49A 3ER8C 2Z0VA 3DDFA 2X5CA 2OW6A 3I2WA 4AVMA 1OA0A 1TQSA 1TQTA 4G6QA 4WPCA 3HPCX 4H8SA 4HYBA 3DPQA 5TKYA 4NQIA 4PQOA 2MI7A 3BVTA 4EZZA 2F18A 3BUDA 2ND1A 3DYTA 4H6IA 4R5IA 4DYLA 1GN9A 3EJRA 2F7OA 1I4TA 1SU8A 3B51X 4IM3A 1OCUA 1QWUA 3DPOA 4HY9A 1JQKA 3LVTA 1KQ6A 3ERCC 2YLLA 4AZGA 5FIGA 2WYIA 4E81A 1XTNA 2LXYA 4EZWA 3T46A 3ZEDA 3CV5A 1HWWA 4M0MA 2OZNB 3DDGA 2D4CA 4JL9A 3I39X 3HAIA 4AZ9A 2L73A 1R34A 3FOGA 3RV0A
chains in the Genus database with same CATH topology
4ATMA 1Y2OA 2ETTA 4P2IA 4IKBB 3G9GA 3CAZA 2IWLX 2FICA 4I1QA 2V6VA 2D1LA 4BNEA 3Q84A 2REAA 3OK8A 1O7KA 2V0OA 1I4LA 2Z0OA 1I49A 3SOGA 2REDA 2Z0VA 1XTEA 1URUA 2Z0NA 3I2WA 4AVMA 3P0CA 4NSWA 3M3WA 4IKDA 4WPCA 3HPCX 5C5BA 2YPSA 3QWEA 4H8SA 1X03A 2X3XA 3LLLA 3HAHA 3QNIA 4PZGA 4NQIA 2RAKA 4PQOA 1KMDA 2X3VA 1X04A 4AKVA 1OCSA 3DYTA 2EFKA 2RAIA 2Q13A 2Q12A 5C5BB 4DYLA 3HPBA 4IKBA 3PLTA 4P2JA 4WPEA 4PQPA 1I4TA 2CZOA 3LUIA 1OCUA 4DCNC 4HASA 1KQ6A 1I4DA 3QE6A 3Q0KA 4ON3A 2WWEA 4OXWA 2DYBA 2I4KA 1XTNA 2RAJA 4BGJA 3ACOA 3HAJA 2AR5A 2C08A 1WDZA 2ELBA 2EFLA 1H6HA 1ZWWA 3IQ2A 2D4CA 2CSKA 3HAIA 4AZ9A 4FZSA 2L73A 2YKTA 2X3WA 3SYVA 1GD5A 3FOGA 2V14A 3ABHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ATM A;  1Y2O A;  2ETT A;  4P2I A;  4IKB B;  3G9G A;  3CAZ A;  2IWL X;  2FIC A;  4I1Q A;  2V6V A;  2D1L A;  4BNE A;  3Q84 A;  2REA A;  3OK8 A;  1O7K A;  2V0O A;  1I4L A;  2Z0O A;  1I49 A;  3SOG A;  2RED A;  2Z0V A;  1XTE A;  1URU A;  2Z0N A;  3I2W A;  4AVM A;  3P0C A;  4NSW A;  3M3W A;  4IKD A;  4WPC A;  3HPC X;  5C5B A;  2YPS A;  3QWE A;  4H8S A;  1X03 A;  2X3X A;  3LLL A;  3HAH A;  3QNI A;  4PZG A;  4NQI A;  2RAK A;  4PQO A;  1KMD A;  2X3V A;  1X04 A;  4AKV A;  1OCS A;  3DYT A;  2EFK A;  2RAI A;  2Q13 A;  2Q12 A;  5C5B B;  4DYL A;  3HPB A;  4IKB A;  3PLT A;  4P2J A;  4WPE A;  4PQP A;  1I4T A;  2CZO A;  3LUI A;  1OCU A;  4DCN C;  4HAS A;  1KQ6 A;  1I4D A;  3QE6 A;  3Q0K A;  4ON3 A;  2WWE A;  4OXW A;  2DYB A;  2I4K A;  1XTN A;  2RAJ A;  4BGJ A;  3ACO A;  3HAJ A;  2AR5 A;  2C08 A;  1WDZ A;  2ELB A;  2EFL A;  1H6H A;  1ZWW A;  3IQ2 A;  2D4C A;  2CSK A;  3HAI A;  4AZ9 A;  4FZS A;  2L73 A;  2YKT A;  2X3W A;  3SYV A;  1GD5 A;  3FOG A;  2V14 A;  3ABH A; 
#chains in the Genus database with same CATH topology
 1TQU A;  3ER9 B;  2ETT A;  4FZO A;  3CAZ A;  3BUB A;  3O3N B;  3VEB A;  4JWI A;  3KDR A;  2FIC A;  1SU7 A;  2D1L A;  2F7Q A;  3DX1 A;  2REA A;  2OBM A;  1TQW A;  1I4L A;  2Z0O A;  3SOG A;  2RED A;  4EZO A;  4JWD A;  4D8J A;  3FD9 A;  2Z0N A;  1SU6 A;  3L3P A;  3QWE A;  3EJS A;  3I01 A;  3L3O M;  3HAH A;  4PZG A;  1DKZ A;  1OA1 A;  2O0I 1;  3F7W A;  2YL9 A;  4AKV A;  4AZ6 A;  1OCS A;  2EFK A;  3OWG A;  2Q13 A;  2OW7 A;  3HPB A;  3BUP A;  3D51 A;  3I04 A;  4HAS A;  2F7R A;  1E1D A;  3CZS A;  3UIT A;  2GA9 D;  1I4D A;  3DX0 A;  4ON3 A;  4EZR A;  2WWE A;  4OXW A;  2Z8Y A;  2DYB A;  3D4Y A;  4BGJ A;  4AZC B;  3HAJ A;  3T4A G;  1MJG A;  4AZB A;  1O7D B;  2ZXQ A;  4EZY A;  1UPX A;  2EFL A;  2F7P A;  3EJP A;  1H6H A;  1LQ7 A;  1SUF A;  3IQ2 A;  1U00 A;  3EJQ A;  4R5L A;  2CSK A;  4IWO A;  2PMR A;  2YKT A;  2X3W A;  2YI8 A;  2V14 A;  1Y2O A;  2JNK A;  1HTY A;  1O7D C;  4E3C A;  4I1Q A;  2WYH A;  4IW0 A;  3VEA A;  4EZT A;  2QKW A;  2EWF A;  2V0O A;  4HR1 B;  3D50 A;  4FM3 A;  3LMF A;  1XTE A;  1URU A;  3M3W A;  4IKD A;  4IWP A;  3CZN A;  3LLL A;  1E9V A;  3QNI A;  4JWC A;  1KMD A;  3RPM A;  3BVU A;  2X3V A;  2FYV A;  3O3O B;  3QA8 A;  3C7N A;  1R33 A;  2RAI A;  2Q12 A;  4AZC A;  2NCZ A;  2YL5 A;  5C5B B;  4B9Q A;  1YWM A;  2ND0 A;  4P2J A;  2CZO A;  3KAW A;  3DX4 A;  4IM2 A;  2OBL A;  2OO2 A;  4R5J A;  3BUQ A;  3OHX M;  3BLB A;  2WIN M;  4F01 A;  1R5E A;  2I4K A;  2RAJ A;  3ACO A;  4R5K A;  1W9M A;  3D4Z A;  2EX3 B;  2KHO A;  3CKD A;  2RT6 A;  2QFF A;  2C08 A;  1WDZ A;  2ELB A;  1PS3 A;  3VKH A;  4R5G A;  4FZS A;  2JNS A;  1GD5 A;  4F00 A;  4HR1 A;  3ABH A;  1DKY A;  3EJT A;  1GNT A;  2F1B A;  4P2I A;  4EZX A;  3BVX A;  3G9G A;  4EZP A;  3RV1 A;  2IWL X;  5FLE X;  4NPH A;  4BNE A;  3Q84 A;  1QX1 A;  3OK8 A;  5KBP A;  1O7K A;  4EZV A;  3BUI A;  4AZ7 A;  4IM0 A;  1E2U A;  2F1A A;  2GF4 A;  3P0C A;  3T49 A;  4NSW A;  4PO2 A;  5C5B A;  4JNE A;  2YPS A;  1OAO A;  2QXL A;  1X03 A;  2X3X A;  4UDX X;  4IWQ A;  2RAK A;  4H6H A;  3O3M B;  1X04 A;  2YIA A;  3D2F A;  3B52 X;  3BVW A;  2ALW A;  4JN4 A;  2GAF D;  3DX2 A;  3B53 X;  4IKB A;  3PLT A;  3CVR A;  2LM0 A;  4WPE A;  2N3K A;  4PQP A;  1TQV A;  3D2E A;  4UDY X;  3LUI A;  2YLA A;  4JNF A;  3EJU A;  4DCN C;  4KIK A;  3A98 A;  3QE6 A;  3Q0K A;  3D52 A;  1QWN A;  3T48 A;  2AR5 A;  3BVV A;  5E84 A;  4EZS A;  3DPP A;  4AZ5 A;  2YL8 A;  1ZWW A;  1DKX A;  2YI9 A;  4JWE A;  3GI7 A;  2YL6 A;  2PY6 A;  3SYV A;  3KAV A;  1GNL A;  4FZP A;  4AZI A;  2YIB A;  4JLC A;  4ATM A;  4AZH A;  3QNJ A;  4EZU A;  3T47 A;  4IKB B;  1HXK A;  1ZYL A;  3DX3 A;  2YIV X;  2V6V A;  4KIK B;  4EZN A;  4EZQ A;  1I49 A;  3ER8 C;  2Z0V A;  3DDF A;  2X5C A;  2OW6 A;  3I2W A;  4AVM A;  1OA0 A;  1TQS A;  1TQT A;  4G6Q A;  4WPC A;  3HPC X;  4H8S A;  4HYB A;  3DPQ A;  5TKY A;  4NQI A;  4PQO A;  2MI7 A;  3BVT A;  4EZZ A;  2F18 A;  3BUD A;  2ND1 A;  3DYT A;  4H6I A;  4R5I A;  4DYL A;  1GN9 A;  3EJR A;  2F7O A;  1I4T A;  1SU8 A;  3B51 X;  4IM3 A;  1OCU A;  1QWU A;  3DPO A;  4HY9 A;  1JQK A;  3LVT A;  1KQ6 A;  3ERC C;  2YLL A;  4AZG A;  5FIG A;  2WYI A;  4E81 A;  1XTN A;  2LXY A;  4EZW A;  3T46 A;  3ZED A;  3CV5 A;  1HWW A;  4M0M A;  2OZN B;  3DDG A;  2D4C A;  4JL9 A;  3I39 X;  3HAI A;  4AZ9 A;  2L73 A;  1R34 A;  3FOG A;  3RV0 A; 
#chains in the Genus database with same CATH homology
 4ATM A;  1Y2O A;  2ETT A;  4P2I A;  4IKB B;  3G9G A;  3CAZ A;  2IWL X;  2FIC A;  4I1Q A;  2V6V A;  2D1L A;  4BNE A;  3Q84 A;  2REA A;  3OK8 A;  1O7K A;  2V0O A;  1I4L A;  2Z0O A;  1I49 A;  3SOG A;  2RED A;  2Z0V A;  1XTE A;  1URU A;  2Z0N A;  3I2W A;  4AVM A;  3P0C A;  4NSW A;  3M3W A;  4IKD A;  4WPC A;  3HPC X;  5C5B A;  2YPS A;  3QWE A;  4H8S A;  1X03 A;  2X3X A;  3LLL A;  3HAH A;  3QNI A;  4PZG A;  4NQI A;  2RAK A;  4PQO A;  1KMD A;  2X3V A;  1X04 A;  4AKV A;  1OCS A;  3DYT A;  2EFK A;  2RAI A;  2Q13 A;  2Q12 A;  5C5B B;  4DYL A;  3HPB A;  4IKB A;  3PLT A;  4P2J A;  4WPE A;  4PQP A;  1I4T A;  2CZO A;  3LUI A;  1OCU A;  4DCN C;  4HAS A;  1KQ6 A;  1I4D A;  3QE6 A;  3Q0K A;  4ON3 A;  2WWE A;  4OXW A;  2DYB A;  2I4K A;  1XTN A;  2RAJ A;  4BGJ A;  3ACO A;  3HAJ A;  2AR5 A;  2C08 A;  1WDZ A;  2ELB A;  2EFL A;  1H6H A;  1ZWW A;  3IQ2 A;  2D4C A;  2CSK A;  3HAI A;  4AZ9 A;  4FZS A;  2L73 A;  2YKT A;  2X3W A;  3SYV A;  1GD5 A;  3FOG A;  2V14 A;  3ABH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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