2RAIA

The px-bar membrane remodeling unit of sorting nexin 9
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
382
structure length
363
Chain Sequence
b'PGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The PX-BAR membrane-remodeling unit of sorting nexin 9
pubmed doi rcsb
molecule keywords Sorting nexin-9
source organism Homo sapiens
molecule tags Structural protein
total genus 118
structure length 363
sequence length 382
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00787 PX PX domain
A PF10456 BAR_3_WASP_bdg WASP-binding domain of Sorting nexin protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2raiA03
3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domain 2raiA02
2RAJA 1OCSA 4PZGA 2I4KA 1X03A 3CAZA 1X04A 2Q12A 3HPCX 3QNIA 2Z0VA 3M3WA 2DYBA 1I4LA 1KMDA 2RAIA 2REAA 3Q84A 2EFKA 2Z0NA 3LUIA 2YKTA 2D4CA 3PLTA 1URUA 3ABHA 4AZ9A 3OK8A 5C5BA 2ELBA 4H8SA 4AKVA 4BNEA 3DYTA 2CZOA 4ATMA 2IWLX 1ZWWA 3IQ2A 2D1LA 2EFLA 2CSKA 3HAJA 4NQIA 1XTNA 4IKDA 2ETTA 4FZSA 1WDZA 3P0CA 2V0OA 3SOGA 1I4TA 4NSWA 4HASA 1XTEA 3HAIA 3LLLA 4WPCA 1OCUA 2REDA 3G9GA 2Q13A 2X3WA 2YPSA 3ACOA 5C5BB 4PQPA 2C08A 3HAHA 2V14A 4BGJA 4OXWA 1Y2OA 1H6HA 2FICA 4ON3A 1I49A 2Z0OA 2AR5A 1KQ6A 3I2WA 4AVMA 4DCNC 2L73A 1GD5A 3Q0KA 4IKBA 4DYLA 4PQOA 1I4DA 2X3VA 1O7KA 3HPBA 4IKBB 2WWEA 2RAKA 4I1QA 4WPEA 3FOGA 2X3XA 4P2IA 3QE6A 2V6VA 3SYVA 4P2JA 3QWEA
chains in the Genus database with same CATH superfamily
4H6IA 2YIVX 4PZGA 1X03A 4AZ6A 3I04A 2QKWA 3EJQA 2Z0VA 1MJGA 2REAA 3Q84A 3UITA 1PS3A 1OA1A 3LUIA 3T47A 4AZGA 3ABHA 4R5GA 3CKDA 1QWUA 5C5BA 4H8SA 4AKVA 3DX4A 3VEBA 2WINM 1ZWWA 3IQ2A 3CZNA 1GN9A 2D1LA 1TQUA 4HR1A 2CSKA 3RPMA 2WYHA 4JN4A 1E2UA 3KDRA 4EZVA 3P0CA 4JWEA 4JNFA 4JWDA 3SOGA 3G9GA 2F1AA 3L3OM 4F00A 3ACOA 1GNTA 3HAHA 3VEAA 2V14A 2N3KA 1SUFA 3EJRA 1Y2OA 2FICA 4EZXA 1QX1A 4R5IA 2Z0OA 2EX3B 2PMRA 1DKXA 2ND0A 4G6QA 1KQ6A 3ZEDA 3ER8C 4F01A 3DX0A 4JNEA 3CV5A 4AVMA 4DCNC 3O3OB 1I4DA 4AZCB 3DX2A 4JWCA 2PY6A 2YL5A 2X3VA 4AZIA 3O3NB 3HPBA 2RAKA 3QE6A 2V6VA 1SU7A 2YLLA 2RAJA 4D8JA 4JL9A 3DDGA 4FZOA 1HTYA 1O7DB 2YL8A 2DYBA 1UPXA 2OBLA 2EFKA 4HY9A 2Z0NA 2MI7A 1JQKA 4NPHA 3BVWA 3O3MB 4HYBA 4E3CA 3OK8A 4EZPA 2YIBA 3QNJA 3DPOA 4IM3A 2GA9D 4ATMA 2CZOA 3I39X 3DPQA 1TQSA 2EFLA 5KBPA 2ETTA 4HR1B 4FZPA 4IM2A 4EZZA 4KIKA 1DKZA 3BUDA 3HAIA 1TQWA 4WPCA 1OCUA 2REDA 3LVTA 3BVTA 2X3WA 3FD9A 4PQPA 2C08A 3BUIA 5TKYA 3A98A 1HWWA 4EZOA 5E84A 3DX1A 4AZ5A 4UDXX 3VKHA 2F7QA 3GI7A 2OO2A 4EZRA 3D2EA 4IKBA 3LMFA 1R34A 3D4ZA 3RV1A 2F7PA 2Z8YA 3ER9B 4PQOA 1W9MA 4JLCA 2YI9A 4I1QA 3FOGA 1R33A 2RT6A 3SYVA 3BUPA 2F1BA 3DX3A 4IWOA 3CAZA 2LXYA 1DKYA 2F7OA 2O0I1 1X04A 2Q12A 3I01A 3HPCX 2LM0A 3M3WA 2QFFA 3CZSA 1I4LA 4JWIA 2EWFA 2YI8A 5FLEX 3PLTA 1YWMA 1URUA 4IWPA 4AZ9A 3OWGA 2YLAA 4EZSA 4BNEA 3EJUA 1TQVA 3DYTA 2IWLX 1SU6A 3D4YA 4IM0A 4E81A 2GF4A 3BVXA 1XTNA 2X5CA 3KAWA 1U00A 1WDZA 2V0OA 3T4AG 4AZCA 1I4TA 3C7NA 4HASA 3D50A 5C5BB 4AZ7A 3T46A 4FM3A 4OXWA 1O7DC 1H6HA 1I49A 2NCZA 3EJTA 3BLBA 2AR5A 2F7RA 2F18A 1ZYLA 4IW0A 2KHOA 3I2WA 2L73A 1GD5A 1R5EA 3T48A 4H6HA 3EJSA 4DYLA 3BUBA 1O7KA 4IKBB 1GNLA 2FYVA 2WWEA 4R5LA 4EZTA 4WPEA 3D51A 2X3XA 4P2IA 4P2JA 3BUQA 2YL9A 4EZYA 4AZBA 3BVUA 1OCSA 2I4KA 2ALWA 2YIAA 4M0MA 2OBMA 3QNIA 2QXLA 1KMDA 3KAVA 2RAIA 4UDYX 1OA0A 1E9VA 2WYIA 2GAFD 2YKTA 2D4CA 4EZQA 4R5KA 3B52X 3DDFA 2ELBA 3ERCC 2OW7A 5FIGA 3F7WA 3HAJA 4NQIA 4PO2A 2JNKA 4IKDA 3D2FA 1LQ7A 2OZNB 3BVVA 3RV0A 4FZSA 4B9QA 2ND1A 3EJPA 1E1DA 3T49A 4NSWA 1XTEA 3LLLA 3L3PA 3CVRA 2Q13A 2YPSA 4EZUA 2ZXQA 4BGJA 2YL6A 4ON3A 1OAOA 4R5JA 2OW6A 4AZHA 3D52A 1TQTA 3Q0KA 4EZWA 1QWNA 3QA8A 1HXKA 1SU8A 4IWQA 4KIKB 3B53X 3B51X 3OHXM 4EZNA 2JNSA 3QWEA 3DPPA
chains in the Genus database with same CATH topology
2RAJA 1OCSA 4PZGA 2I4KA 1X03A 3CAZA 1X04A 2Q12A 3HPCX 3QNIA 2Z0VA 3M3WA 2DYBA 1I4LA 1KMDA 2RAIA 2REAA 3Q84A 2EFKA 2Z0NA 3LUIA 2YKTA 2D4CA 3PLTA 1URUA 3ABHA 4AZ9A 3OK8A 5C5BA 2ELBA 4H8SA 4AKVA 4BNEA 3DYTA 2CZOA 4ATMA 2IWLX 1ZWWA 3IQ2A 2D1LA 2EFLA 2CSKA 3HAJA 4NQIA 1XTNA 4IKDA 2ETTA 4FZSA 1WDZA 3P0CA 2V0OA 3SOGA 1I4TA 4NSWA 4HASA 1XTEA 3HAIA 3LLLA 4WPCA 1OCUA 2REDA 3G9GA 2Q13A 2X3WA 2YPSA 3ACOA 5C5BB 4PQPA 2C08A 3HAHA 2V14A 4BGJA 4OXWA 1Y2OA 1H6HA 2FICA 4ON3A 1I49A 2Z0OA 2AR5A 1KQ6A 3I2WA 4AVMA 4DCNC 2L73A 1GD5A 3Q0KA 4IKBA 4DYLA 4PQOA 1I4DA 2X3VA 1O7KA 3HPBA 4IKBB 2WWEA 2RAKA 4I1QA 4WPEA 3FOGA 2X3XA 4P2IA 3QE6A 2V6VA 3SYVA 4P2JA 3QWEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RAJ A;  1OCS A;  4PZG A;  2I4K A;  1X03 A;  3CAZ A;  1X04 A;  2Q12 A;  3HPC X;  3QNI A;  2Z0V A;  3M3W A;  2DYB A;  1I4L A;  1KMD A;  2RAI A;  2REA A;  3Q84 A;  2EFK A;  2Z0N A;  3LUI A;  2YKT A;  2D4C A;  3PLT A;  1URU A;  3ABH A;  4AZ9 A;  3OK8 A;  5C5B A;  2ELB A;  4H8S A;  4AKV A;  4BNE A;  3DYT A;  2CZO A;  4ATM A;  2IWL X;  1ZWW A;  3IQ2 A;  2D1L A;  2EFL A;  2CSK A;  3HAJ A;  4NQI A;  1XTN A;  4IKD A;  2ETT A;  4FZS A;  1WDZ A;  3P0C A;  2V0O A;  3SOG A;  1I4T A;  4NSW A;  4HAS A;  1XTE A;  3HAI A;  3LLL A;  4WPC A;  1OCU A;  2RED A;  3G9G A;  2Q13 A;  2X3W A;  2YPS A;  3ACO A;  5C5B B;  4PQP A;  2C08 A;  3HAH A;  2V14 A;  4BGJ A;  4OXW A;  1Y2O A;  1H6H A;  2FIC A;  4ON3 A;  1I49 A;  2Z0O A;  2AR5 A;  1KQ6 A;  3I2W A;  4AVM A;  4DCN C;  2L73 A;  1GD5 A;  3Q0K A;  4IKB A;  4DYL A;  4PQO A;  1I4D A;  2X3V A;  1O7K A;  3HPB A;  4IKB B;  2WWE A;  2RAK A;  4I1Q A;  4WPE A;  3FOG A;  2X3X A;  4P2I A;  3QE6 A;  2V6V A;  3SYV A;  4P2J A;  3QWE A; 
#chains in the Genus database with same CATH topology
 4H6I A;  2YIV X;  4PZG A;  1X03 A;  4AZ6 A;  3I04 A;  2QKW A;  3EJQ A;  2Z0V A;  1MJG A;  2REA A;  3Q84 A;  3UIT A;  1PS3 A;  1OA1 A;  3LUI A;  3T47 A;  4AZG A;  3ABH A;  4R5G A;  3CKD A;  1QWU A;  5C5B A;  4H8S A;  4AKV A;  3DX4 A;  3VEB A;  2WIN M;  1ZWW A;  3IQ2 A;  3CZN A;  1GN9 A;  2D1L A;  1TQU A;  4HR1 A;  2CSK A;  3RPM A;  2WYH A;  4JN4 A;  1E2U A;  3KDR A;  4EZV A;  3P0C A;  4JWE A;  4JNF A;  4JWD A;  3SOG A;  3G9G A;  2F1A A;  3L3O M;  4F00 A;  3ACO A;  1GNT A;  3HAH A;  3VEA A;  2V14 A;  2N3K A;  1SUF A;  3EJR A;  1Y2O A;  2FIC A;  4EZX A;  1QX1 A;  4R5I A;  2Z0O A;  2EX3 B;  2PMR A;  1DKX A;  2ND0 A;  4G6Q A;  1KQ6 A;  3ZED A;  3ER8 C;  4F01 A;  3DX0 A;  4JNE A;  3CV5 A;  4AVM A;  4DCN C;  3O3O B;  1I4D A;  4AZC B;  3DX2 A;  4JWC A;  2PY6 A;  2YL5 A;  2X3V A;  4AZI A;  3O3N B;  3HPB A;  2RAK A;  3QE6 A;  2V6V A;  1SU7 A;  2YLL A;  2RAJ A;  4D8J A;  4JL9 A;  3DDG A;  4FZO A;  1HTY A;  1O7D B;  2YL8 A;  2DYB A;  1UPX A;  2OBL A;  2EFK A;  4HY9 A;  2Z0N A;  2MI7 A;  1JQK A;  4NPH A;  3BVW A;  3O3M B;  4HYB A;  4E3C A;  3OK8 A;  4EZP A;  2YIB A;  3QNJ A;  3DPO A;  4IM3 A;  2GA9 D;  4ATM A;  2CZO A;  3I39 X;  3DPQ A;  1TQS A;  2EFL A;  5KBP A;  2ETT A;  4HR1 B;  4FZP A;  4IM2 A;  4EZZ A;  4KIK A;  1DKZ A;  3BUD A;  3HAI A;  1TQW A;  4WPC A;  1OCU A;  2RED A;  3LVT A;  3BVT A;  2X3W A;  3FD9 A;  4PQP A;  2C08 A;  3BUI A;  5TKY A;  3A98 A;  1HWW A;  4EZO A;  5E84 A;  3DX1 A;  4AZ5 A;  4UDX X;  3VKH A;  2F7Q A;  3GI7 A;  2OO2 A;  4EZR A;  3D2E A;  4IKB A;  3LMF A;  1R34 A;  3D4Z A;  3RV1 A;  2F7P A;  2Z8Y A;  3ER9 B;  4PQO A;  1W9M A;  4JLC A;  2YI9 A;  4I1Q A;  3FOG A;  1R33 A;  2RT6 A;  3SYV A;  3BUP A;  2F1B A;  3DX3 A;  4IWO A;  3CAZ A;  2LXY A;  1DKY A;  2F7O A;  2O0I 1;  1X04 A;  2Q12 A;  3I01 A;  3HPC X;  2LM0 A;  3M3W A;  2QFF A;  3CZS A;  1I4L A;  4JWI A;  2EWF A;  2YI8 A;  5FLE X;  3PLT A;  1YWM A;  1URU A;  4IWP A;  4AZ9 A;  3OWG A;  2YLA A;  4EZS A;  4BNE A;  3EJU A;  1TQV A;  3DYT A;  2IWL X;  1SU6 A;  3D4Y A;  4IM0 A;  4E81 A;  2GF4 A;  3BVX A;  1XTN A;  2X5C A;  3KAW A;  1U00 A;  1WDZ A;  2V0O A;  3T4A G;  4AZC A;  1I4T A;  3C7N A;  4HAS A;  3D50 A;  5C5B B;  4AZ7 A;  3T46 A;  4FM3 A;  4OXW A;  1O7D C;  1H6H A;  1I49 A;  2NCZ A;  3EJT A;  3BLB A;  2AR5 A;  2F7R A;  2F18 A;  1ZYL A;  4IW0 A;  2KHO A;  3I2W A;  2L73 A;  1GD5 A;  1R5E A;  3T48 A;  4H6H A;  3EJS A;  4DYL A;  3BUB A;  1O7K A;  4IKB B;  1GNL A;  2FYV A;  2WWE A;  4R5L A;  4EZT A;  4WPE A;  3D51 A;  2X3X A;  4P2I A;  4P2J A;  3BUQ A;  2YL9 A;  4EZY A;  4AZB A;  3BVU A;  1OCS A;  2I4K A;  2ALW A;  2YIA A;  4M0M A;  2OBM A;  3QNI A;  2QXL A;  1KMD A;  3KAV A;  2RAI A;  4UDY X;  1OA0 A;  1E9V A;  2WYI A;  2GAF D;  2YKT A;  2D4C A;  4EZQ A;  4R5K A;  3B52 X;  3DDF A;  2ELB A;  3ERC C;  2OW7 A;  5FIG A;  3F7W A;  3HAJ A;  4NQI A;  4PO2 A;  2JNK A;  4IKD A;  3D2F A;  1LQ7 A;  2OZN B;  3BVV A;  3RV0 A;  4FZS A;  4B9Q A;  2ND1 A;  3EJP A;  1E1D A;  3T49 A;  4NSW A;  1XTE A;  3LLL A;  3L3P A;  3CVR A;  2Q13 A;  2YPS A;  4EZU A;  2ZXQ A;  4BGJ A;  2YL6 A;  4ON3 A;  1OAO A;  4R5J A;  2OW6 A;  4AZH A;  3D52 A;  1TQT A;  3Q0K A;  4EZW A;  1QWN A;  3QA8 A;  1HXK A;  1SU8 A;  4IWQ A;  4KIK B;  3B53 X;  3B51 X;  3OHX M;  4EZN A;  2JNS A;  3QWE A;  3DPP A; 
#chains in the Genus database with same CATH homology
 2RAJ A;  1OCS A;  4PZG A;  2I4K A;  1X03 A;  3CAZ A;  1X04 A;  2Q12 A;  3HPC X;  3QNI A;  2Z0V A;  3M3W A;  2DYB A;  1I4L A;  1KMD A;  2RAI A;  2REA A;  3Q84 A;  2EFK A;  2Z0N A;  3LUI A;  2YKT A;  2D4C A;  3PLT A;  1URU A;  3ABH A;  4AZ9 A;  3OK8 A;  5C5B A;  2ELB A;  4H8S A;  4AKV A;  4BNE A;  3DYT A;  2CZO A;  4ATM A;  2IWL X;  1ZWW A;  3IQ2 A;  2D1L A;  2EFL A;  2CSK A;  3HAJ A;  4NQI A;  1XTN A;  4IKD A;  2ETT A;  4FZS A;  1WDZ A;  3P0C A;  2V0O A;  3SOG A;  1I4T A;  4NSW A;  4HAS A;  1XTE A;  3HAI A;  3LLL A;  4WPC A;  1OCU A;  2RED A;  3G9G A;  2Q13 A;  2X3W A;  2YPS A;  3ACO A;  5C5B B;  4PQP A;  2C08 A;  3HAH A;  2V14 A;  4BGJ A;  4OXW A;  1Y2O A;  1H6H A;  2FIC A;  4ON3 A;  1I49 A;  2Z0O A;  2AR5 A;  1KQ6 A;  3I2W A;  4AVM A;  4DCN C;  2L73 A;  1GD5 A;  3Q0K A;  4IKB A;  4DYL A;  4PQO A;  1I4D A;  2X3V A;  1O7K A;  3HPB A;  4IKB B;  2WWE A;  2RAK A;  4I1Q A;  4WPE A;  3FOG A;  2X3X A;  4P2I A;  3QE6 A;  2V6V A;  3SYV A;  4P2J A;  3QWE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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