1OCU | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	134
structure length	133
Chain Sequence	IYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEKFV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 133 atoms

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133 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sorting protein
source organism	saccharomyces cerevisiae s288c
publication title	Crystal structure of the yeast Phox homology (PX) domain protein Grd19p complexed to phosphatidylinositol-3-phosphate. pubmed doi rcsb
molecule keywords	SORTING NEXIN
total genus	39
structure length	133
sequence length	134
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-02-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	1ocuA00

3DYTA 4PQOA 4AZ9A 2AR5A 3LUIA 1OCSA 4PZGA 3HPCX 2ETTA 4IKDA 4PQPA 2REAA 2WWEA 4BGJA 1OCUA 2CZOA 2I4KA 2RAJA 1XTNA 3P0CA 2RAIA 1O7KA 1H6HA 4P2IA 2DYBA 4P2JA 4IKBB 3FOGA 1KMDA 2V6VA 3HPBA 2YPSA 2RAKA 2CSKA 1KQ6A 4ON3A 2REDA 4AKVA 3IQ2A 2L73A 2V14A 4HASA 1GD5A 4IKBA 4OXWA 2IWLX 1XTEA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3DYT A;  4PQO A;  4AZ9 A;  2AR5 A;  3LUI A;  1OCS A;  4PZG A;  3HPC X;  2ETT A;  4IKD A;  4PQP A;  2REA A;  2WWE A;  4BGJ A;  1OCU A;  2CZO A;  2I4K A;  2RAJ A;  1XTN A;  3P0C A;  2RAI A;  1O7K A;  1H6H A;  4P2I A;  2DYB A;  4P2J A;  4IKB B;  3FOG A;  1KMD A;  2V6V A;  3HPB A;  2YPS A;  2RAK A;  2CSK A;  1KQ6 A;  4ON3 A;  2RED A;  4AKV A;  3IQ2 A;  2L73 A;  2V14 A;  4HAS A;  1GD5 A;  4IKB A;  4OXW A;  2IWL X;  1XTE A; 
#chains in the Genus database with same CATH topology
 3DYT A;  4PQO A;  4AZ9 A;  2AR5 A;  3LUI A;  1OCS A;  4PZG A;  3HPC X;  2ETT A;  4IKD A;  4PQP A;  2REA A;  2WWE A;  4BGJ A;  1OCU A;  2CZO A;  2I4K A;  2RAJ A;  1XTN A;  3P0C A;  2RAI A;  1O7K A;  1H6H A;  4P2I A;  2DYB A;  4P2J A;  4IKB B;  3FOG A;  1KMD A;  2V6V A;  3HPB A;  2YPS A;  2RAK A;  2CSK A;  1KQ6 A;  4ON3 A;  2RED A;  4AKV A;  3IQ2 A;  2L73 A;  2V14 A;  4HAS A;  1GD5 A;  4IKB A;  4OXW A;  2IWL X;  1XTE A; 
#chains in the Genus database with same CATH homology
 3DYT A;  4PQO A;  4AZ9 A;  2AR5 A;  3LUI A;  1OCS A;  4PZG A;  3HPC X;  2ETT A;  4IKD A;  4PQP A;  2REA A;  2WWE A;  4BGJ A;  1OCU A;  2CZO A;  2I4K A;  2RAJ A;  1XTN A;  3P0C A;  2RAI A;  1O7K A;  1H6H A;  4P2I A;  2DYB A;  4P2J A;  4IKB B;  3FOG A;  1KMD A;  2V6V A;  3HPB A;  2YPS A;  2RAK A;  2CSK A;  1KQ6 A;  4ON3 A;  2RED A;  4AKV A;  3IQ2 A;  2L73 A;  2V14 A;  4HAS A;  1GD5 A;  4IKB A;  4OXW A;  2IWL X;  1XTE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OCUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations