1QDW | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	87
structure length	87
Chain Sequence	ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 87 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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87 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Rattus norvegicus
publication title	The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel. pubmed doi rcsb
molecule keywords	KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL
total genus	28
structure length	87
sequence length	87
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	1999-07-10

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	1qdwA00

5BO4C 3ZUNB 4CXIA 2R9RB 2MA9C 1FQVB 2IZVC 5A15A 1R2BA 1A68A 3KVTA 1QDVA 2OVRA 1EXBE 4BGCA 4CXJA 1EODA 3M4TA 3FKCA 4W9KB 3OGLA 1HV2A 3C6PA 4JTCB 4J8ZA 1P22B 2ASSA 4W9HB 2IHCA 4W9IB 4BKTB 4U77A 3HQIA 4ZOUA 3V7DA 1CS3A 2P1NA 4B9KE 1DSXA 5DADA 1NN7A 3WSOB 2Z8HA 5BXHA 2P1QA 4W9LB 5IBKA 1FS2B 2FNJC 4W9HH 3OGKA 5BXDA 5FTAA 3HTMA 5HZGC 3E4UA 4I6JC 2ASTA 4EOZA 3HVEA 2PPIA 2YY9A 4U2MA 3ZNGB 3MKSA 3ZRFB 3M5BA 1S1GA 3LUTB 3OHVA 2VPKA 4CXTA 2P1PA 2A79B 4UYIA 2I2RA 1LDKD 3M52A 3DCGB 5HYWB 4BKSB 3B84A 2P1OA 3C6NA 4W9CB 4W9GB 4B95B 1QDWA 3L2OA 1EOEA 4JTDB 3OGMA 4B9KB 2E31B 4AWJB 4N9F5 3DRZA 3ZRCB 3HU6A 4AP2A 5A6RA 3LBZA 2NZ0B 4U2NA 1R28A 3ZTCB 1FS1B 4CP3A 2C9WC 2OVQA 4AJYC 2OVPA 4JGHC 3BIMA 4CRHA 3C6OA 1LQBB 1R29A 2VKPA 4W9JB 2P1MA 4W9EB 2NN2A 4W9FB 4WQOC 3ZTDB 1NEXA 4HXIA 1VCBB 2Q81A 5JH5B 1BUOA 5H7GA 5EUPA 4APFA 1LM8C 2E32B 1EOFA 3GA1A 3M8VA 4UIJA 3OHUA 1T1DA 3HVEB 3LNMB 5BXBA 5DAFA 2IF5A 3I3NA 4W9DB 3ZKJB 4JTAB 5H7HA 5LLIB 2JZ3C
chains in the Genus database with same CATH superfamily

5BO4C 3ZUNB 4CXIA 2R9RB 2MA9C 1FQVB 4ZGCA 2IZVC 5A15A 1R2BA 1A68A 3KVTA 1QDVA 2OVRA 1EXBE 4BGCA 4CXJA 1EODA 3M4TA 3FKCA 4W9KB 3OGLA 1HV2A 3C6PA 4JTCB 4J8ZA 1P22B 2ASSA 4W9HB 2IHCA 4W9IB 4BKTB 4U77A 3HQIA 4ZOUA 3V7DA 1CS3A 2P1NA 4B9KE 1DSXA 4YY8A 5DADA 1NN7A 3WSOB 2Z8HA 5BXHA 2P1QA 4W9LB 5IBKA 1FS2B 2FNJC 4W9HH 3OGKA 5BXDA 5FTAA 3HTMA 5HZGC 3E4UA 4I6JC 2ASTA 4EOZA 3HVEA 2PPIA 2YY9A 4U2MA 3ZNGB 3DRXA 3MKSA 3ZRFB 3M5BA 1S1GA 3LUTB 3OHVA 2VPKA 4CXTA 2P1PA 2A79B 4UYIA 2I2RA 1LDKD 3M52A 3DCGB 5HYWB 4BKSB 3B84A 2P1OA 3C6NA 4W9CB 4W9GB 4B95B 1QDWA 3L2OA 1EOEA 4JTDB 3OGMA 4B9KB 2E31B 4AWJB 4N9F5 3DRYA 3DRZA 3ZRCB 3HU6A 4AP2A 5A6RA 3LBZA 2NZ0B 4U2NA 1R28A 3ZTCB 1FS1B 4CP3A 2C9WC 2OVQA 4AJYC 2OVPA 4JGHC 3BIMA 4CRHA 3C6OA 1LQBB 1R29A 2VKPA 4W9JB 2P1MA 4W9EB 2NN2A 4W9FB 4WQOC 3ZTDB 1NEXA 4HXIA 1VCBB 2Q81A 5JH5B 1BUOA 5H7GA 5EUPA 4APFA 1LM8C 2E32B 1EOFA 3GA1A 3M8VA 4UIJA 3OHUA 1T1DA 3HVEB 3LNMB 5BXBA 5DAFA 2IF5A 3I3NA 4W9DB 3ZKJB 4JTAB 5H7HA 5LLIB 2JZ3C
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5BO4 C;  3ZUN B;  4CXI A;  2R9R B;  2MA9 C;  1FQV B;  2IZV C;  5A15 A;  1R2B A;  1A68 A;  3KVT A;  1QDV A;  2OVR A;  1EXB E;  4BGC A;  4CXJ A;  1EOD A;  3M4T A;  3FKC A;  4W9K B;  3OGL A;  1HV2 A;  3C6P A;  4JTC B;  4J8Z A;  1P22 B;  2ASS A;  4W9H B;  2IHC A;  4W9I B;  4BKT B;  4U77 A;  3HQI A;  4ZOU A;  3V7D A;  1CS3 A;  2P1N A;  4B9K E;  1DSX A;  5DAD A;  1NN7 A;  3WSO B;  2Z8H A;  5BXH A;  2P1Q A;  4W9L B;  5IBK A;  1FS2 B;  2FNJ C;  4W9H H;  3OGK A;  5BXD A;  5FTA A;  3HTM A;  5HZG C;  3E4U A;  4I6J C;  2AST A;  4EOZ A;  3HVE A;  2PPI A;  2YY9 A;  4U2M A;  3ZNG B;  3MKS A;  3ZRF B;  3M5B A;  1S1G A;  3LUT B;  3OHV A;  2VPK A;  4CXT A;  2P1P A;  2A79 B;  4UYI A;  2I2R A;  1LDK D;  3M52 A;  3DCG B;  5HYW B;  4BKS B;  3B84 A;  2P1O A;  3C6N A;  4W9C B;  4W9G B;  4B95 B;  1QDW A;  3L2O A;  1EOE A;  4JTD B;  3OGM A;  4B9K B;  2E31 B;  4AWJ B;  4N9F 5;  3DRZ A;  3ZRC B;  3HU6 A;  4AP2 A;  5A6R A;  3LBZ A;  2NZ0 B;  4U2N A;  1R28 A;  3ZTC B;  1FS1 B;  4CP3 A;  2C9W C;  2OVQ A;  4AJY C;  2OVP A;  4JGH C;  3BIM A;  4CRH A;  3C6O A;  1LQB B;  1R29 A;  2VKP A;  4W9J B;  2P1M A;  4W9E B;  2NN2 A;  4W9F B;  4WQO C;  3ZTD B;  1NEX A;  4HXI A;  1VCB B;  2Q81 A;  5JH5 B;  1BUO A;  5H7G A;  5EUP A;  4APF A;  1LM8 C;  2E32 B;  1EOF A;  3GA1 A;  3M8V A;  4UIJ A;  3OHU A;  1T1D A;  3HVE B;  3LNM B;  5BXB A;  5DAF A;  2IF5 A;  3I3N A;  4W9D B;  3ZKJ B;  4JTA B;  5H7H A;  5LLI B;  2JZ3 C; 
#chains in the Genus database with same CATH topology
 5BO4 C;  3ZUN B;  4CXI A;  2R9R B;  2MA9 C;  1FQV B;  4ZGC A;  2IZV C;  5A15 A;  1R2B A;  1A68 A;  3KVT A;  1QDV A;  2OVR A;  1EXB E;  4BGC A;  4CXJ A;  1EOD A;  3M4T A;  3FKC A;  4W9K B;  3OGL A;  1HV2 A;  3C6P A;  4JTC B;  4J8Z A;  1P22 B;  2ASS A;  4W9H B;  2IHC A;  4W9I B;  4BKT B;  4U77 A;  3HQI A;  4ZOU A;  3V7D A;  1CS3 A;  2P1N A;  4B9K E;  1DSX A;  4YY8 A;  5DAD A;  1NN7 A;  3WSO B;  2Z8H A;  5BXH A;  2P1Q A;  4W9L B;  5IBK A;  1FS2 B;  2FNJ C;  4W9H H;  3OGK A;  5BXD A;  5FTA A;  3HTM A;  5HZG C;  3E4U A;  4I6J C;  2AST A;  4EOZ A;  3HVE A;  2PPI A;  2YY9 A;  4U2M A;  3ZNG B;  3DRX A;  3MKS A;  3ZRF B;  3M5B A;  1S1G A;  3LUT B;  3OHV A;  2VPK A;  4CXT A;  2P1P A;  2A79 B;  4UYI A;  2I2R A;  1LDK D;  3M52 A;  3DCG B;  5HYW B;  4BKS B;  3B84 A;  2P1O A;  3C6N A;  4W9C B;  4W9G B;  4B95 B;  1QDW A;  3L2O A;  1EOE A;  4JTD B;  3OGM A;  4B9K B;  2E31 B;  4AWJ B;  4N9F 5;  3DRY A;  3DRZ A;  3ZRC B;  3HU6 A;  4AP2 A;  5A6R A;  3LBZ A;  2NZ0 B;  4U2N A;  1R28 A;  3ZTC B;  1FS1 B;  4CP3 A;  2C9W C;  2OVQ A;  4AJY C;  2OVP A;  4JGH C;  3BIM A;  4CRH A;  3C6O A;  1LQB B;  1R29 A;  2VKP A;  4W9J B;  2P1M A;  4W9E B;  2NN2 A;  4W9F B;  4WQO C;  3ZTD B;  1NEX A;  4HXI A;  1VCB B;  2Q81 A;  5JH5 B;  1BUO A;  5H7G A;  5EUP A;  4APF A;  1LM8 C;  2E32 B;  1EOF A;  3GA1 A;  3M8V A;  4UIJ A;  3OHU A;  1T1D A;  3HVE B;  3LNM B;  5BXB A;  5DAF A;  2IF5 A;  3I3N A;  4W9D B;  3ZKJ B;  4JTA B;  5H7H A;  5LLI B;  2JZ3 C; 
#chains in the Genus database with same CATH homology
 5BO4 C;  3ZUN B;  4CXI A;  2R9R B;  2MA9 C;  1FQV B;  4ZGC A;  2IZV C;  5A15 A;  1R2B A;  1A68 A;  3KVT A;  1QDV A;  2OVR A;  1EXB E;  4BGC A;  4CXJ A;  1EOD A;  3M4T A;  3FKC A;  4W9K B;  3OGL A;  1HV2 A;  3C6P A;  4JTC B;  4J8Z A;  1P22 B;  2ASS A;  4W9H B;  2IHC A;  4W9I B;  4BKT B;  4U77 A;  3HQI A;  4ZOU A;  3V7D A;  1CS3 A;  2P1N A;  4B9K E;  1DSX A;  4YY8 A;  5DAD A;  1NN7 A;  3WSO B;  2Z8H A;  5BXH A;  2P1Q A;  4W9L B;  5IBK A;  1FS2 B;  2FNJ C;  4W9H H;  3OGK A;  5BXD A;  5FTA A;  3HTM A;  5HZG C;  3E4U A;  4I6J C;  2AST A;  4EOZ A;  3HVE A;  2PPI A;  2YY9 A;  4U2M A;  3ZNG B;  3DRX A;  3MKS A;  3ZRF B;  3M5B A;  1S1G A;  3LUT B;  3OHV A;  2VPK A;  4CXT A;  2P1P A;  2A79 B;  4UYI A;  2I2R A;  1LDK D;  3M52 A;  3DCG B;  5HYW B;  4BKS B;  3B84 A;  2P1O A;  3C6N A;  4W9C B;  4W9G B;  4B95 B;  1QDW A;  3L2O A;  1EOE A;  4JTD B;  3OGM A;  4B9K B;  2E31 B;  4AWJ B;  4N9F 5;  3DRY A;  3DRZ A;  3ZRC B;  3HU6 A;  4AP2 A;  5A6R A;  3LBZ A;  2NZ0 B;  4U2N A;  1R28 A;  3ZTC B;  1FS1 B;  4CP3 A;  2C9W C;  2OVQ A;  4AJY C;  2OVP A;  4JGH C;  3BIM A;  4CRH A;  3C6O A;  1LQB B;  1R29 A;  2VKP A;  4W9J B;  2P1M A;  4W9E B;  2NN2 A;  4W9F B;  4WQO C;  3ZTD B;  1NEX A;  4HXI A;  1VCB B;  2Q81 A;  5JH5 B;  1BUO A;  5H7G A;  5EUP A;  4APF A;  1LM8 C;  2E32 B;  1EOF A;  3GA1 A;  3M8V A;  4UIJ A;  3OHU A;  1T1D A;  3HVE B;  3LNM B;  5BXB A;  5DAF A;  2IF5 A;  3I3N A;  4W9D B;  3ZKJ B;  4JTA B;  5H7H A;  5LLI B;  2JZ3 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1QDWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN