1R28 | Genus

Total Genus 41

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	122
structure length	122
Chain Sequence	SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Mechanism of SMRT corepressor recruitment by the BCL6 BTB domain. pubmed doi rcsb
molecule keywords	B-cell lymphoma 6 protein
total genus	41
structure length	122
sequence length	122
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-09-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	1r28A00

4WQOC 5JH5B 4W9HB 5BXDA 3C6PA 2P1OA 3I3NA 4JGHC 3ZTDB 4BKSB 4B9KE 2VKPA 2NZ0B 4U2NA 4CRHA 2P1QA 1VCBB 4JTDB 2C9WC 5BXBA 1CS3A 3KVTA 1NN7A 4U2MA 4APFA 1FS1B 5EUPA 4W9JB 3OGKA 3GA1A 3DCGB 3HQIA 3HU6A 2ASTA 2A79B 1BUOA 1LDKD 4J8ZA 3ZRCB 2Q81A 3ZKJB 1FS2B 4W9FB 4N9F5 1LQBB 3MKSA 3C6NA 3OGMA 5A6RA 2P1PA 3LUTB 4EOZA 4I6JC 1FQVB 4UYIA 1DSXA 2P1NA 3M5BA 4W9KB 5LLIB 4B9KB 4W9HH 4AWJB 4CXJA 4B95B 2E31B 2FNJC 2VPKA 5IBKA 3ZRFB 2IF5A 2MA9C 4AJYC 3M8VA 2OVQA 1EXBE 5DAFA 4CXIA 5BXHA 1EOFA 2OVPA 3C6OA 3LBZA 4JTCB 4JTAB 3L2OA 5H7HA 1QDWA 3WSOB 3M52A 1HV2A 2R9RB 1R28A 4BGCA 3M4TA 3BIMA 3LNMB 5A15A 4AP2A 3B84A 2NN2A 4UIJA 1P22B 4W9CB 1LM8C 3OHVA 2PPIA 1R29A 3DRZA 5FTAA 2Z8HA 5H7GA 3V7DA 1EOEA 3E4UA 2P1MA 3OHUA 5BO4C 3OGLA 2YY9A 1QDVA 3HVEB 4W9EB 2I2RA 2E32B 3HTMA 3FKCA 2JZ3C 3ZTCB 1R2BA 3ZNGB 3ZUNB 2ASSA 2IHCA 4CP3A 4W9DB 4CXTA 4HXIA 4ZOUA 1A68A 1EODA 5DADA 4BKTB 4W9GB 4W9LB 2OVRA 1T1DA 1NEXA 5HZGC 4W9IB 1S1GA 3HVEA 4U77A 5HYWB 2IZVC
chains in the Genus database with same CATH superfamily

4WQOC 5JH5B 4W9HB 5BXDA 3C6PA 2P1OA 3I3NA 4JGHC 3ZTDB 4BKSB 4B9KE 2VKPA 2NZ0B 4U2NA 4CRHA 2P1QA 1VCBB 4JTDB 2C9WC 5BXBA 1CS3A 3KVTA 1NN7A 4U2MA 4APFA 3DRXA 1FS1B 5EUPA 4W9JB 3OGKA 4ZGCA 3GA1A 3DCGB 3HQIA 3HU6A 2ASTA 2A79B 1BUOA 1LDKD 4J8ZA 3ZRCB 2Q81A 3ZKJB 1FS2B 4W9FB 4N9F5 1LQBB 3DRYA 3MKSA 3C6NA 3OGMA 5A6RA 2P1PA 3LUTB 4EOZA 4I6JC 1FQVB 4UYIA 1DSXA 2P1NA 3M5BA 4W9KB 5LLIB 4B9KB 4W9HH 4AWJB 4CXJA 4B95B 2E31B 2FNJC 2VPKA 5IBKA 3ZRFB 2IF5A 2MA9C 4AJYC 3M8VA 2OVQA 1EXBE 5DAFA 4CXIA 5BXHA 1EOFA 2OVPA 3C6OA 3LBZA 4JTCB 4JTAB 3L2OA 5H7HA 1QDWA 3WSOB 3M52A 1HV2A 2R9RB 1R28A 4BGCA 3M4TA 4YY8A 3BIMA 3LNMB 5A15A 4AP2A 3B84A 2NN2A 4UIJA 1P22B 4W9CB 1LM8C 3OHVA 2PPIA 1R29A 3DRZA 5FTAA 2Z8HA 5H7GA 3V7DA 1EOEA 3E4UA 2P1MA 3OHUA 5BO4C 3OGLA 2YY9A 1QDVA 3HVEB 4W9EB 2I2RA 2E32B 3HTMA 3FKCA 2JZ3C 3ZTCB 1R2BA 3ZNGB 3ZUNB 2ASSA 2IHCA 4CP3A 4W9DB 4CXTA 4HXIA 4ZOUA 1A68A 1EODA 5DADA 4BKTB 4W9GB 4W9LB 2OVRA 1T1DA 1NEXA 5HZGC 4W9IB 1S1GA 3HVEA 4U77A 5HYWB 2IZVC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4WQO C;  5JH5 B;  4W9H B;  5BXD A;  3C6P A;  2P1O A;  3I3N A;  4JGH C;  3ZTD B;  4BKS B;  4B9K E;  2VKP A;  2NZ0 B;  4U2N A;  4CRH A;  2P1Q A;  1VCB B;  4JTD B;  2C9W C;  5BXB A;  1CS3 A;  3KVT A;  1NN7 A;  4U2M A;  4APF A;  1FS1 B;  5EUP A;  4W9J B;  3OGK A;  3GA1 A;  3DCG B;  3HQI A;  3HU6 A;  2AST A;  2A79 B;  1BUO A;  1LDK D;  4J8Z A;  3ZRC B;  2Q81 A;  3ZKJ B;  1FS2 B;  4W9F B;  4N9F 5;  1LQB B;  3MKS A;  3C6N A;  3OGM A;  5A6R A;  2P1P A;  3LUT B;  4EOZ A;  4I6J C;  1FQV B;  4UYI A;  1DSX A;  2P1N A;  3M5B A;  4W9K B;  5LLI B;  4B9K B;  4W9H H;  4AWJ B;  4CXJ A;  4B95 B;  2E31 B;  2FNJ C;  2VPK A;  5IBK A;  3ZRF B;  2IF5 A;  2MA9 C;  4AJY C;  3M8V A;  2OVQ A;  1EXB E;  5DAF A;  4CXI A;  5BXH A;  1EOF A;  2OVP A;  3C6O A;  3LBZ A;  4JTC B;  4JTA B;  3L2O A;  5H7H A;  1QDW A;  3WSO B;  3M52 A;  1HV2 A;  2R9R B;  1R28 A;  4BGC A;  3M4T A;  3BIM A;  3LNM B;  5A15 A;  4AP2 A;  3B84 A;  2NN2 A;  4UIJ A;  1P22 B;  4W9C B;  1LM8 C;  3OHV A;  2PPI A;  1R29 A;  3DRZ A;  5FTA A;  2Z8H A;  5H7G A;  3V7D A;  1EOE A;  3E4U A;  2P1M A;  3OHU A;  5BO4 C;  3OGL A;  2YY9 A;  1QDV A;  3HVE B;  4W9E B;  2I2R A;  2E32 B;  3HTM A;  3FKC A;  2JZ3 C;  3ZTC B;  1R2B A;  3ZNG B;  3ZUN B;  2ASS A;  2IHC A;  4CP3 A;  4W9D B;  4CXT A;  4HXI A;  4ZOU A;  1A68 A;  1EOD A;  5DAD A;  4BKT B;  4W9G B;  4W9L B;  2OVR A;  1T1D A;  1NEX A;  5HZG C;  4W9I B;  1S1G A;  3HVE A;  4U77 A;  5HYW B;  2IZV C; 
#chains in the Genus database with same CATH topology
 4WQO C;  5JH5 B;  4W9H B;  5BXD A;  3C6P A;  2P1O A;  3I3N A;  4JGH C;  3ZTD B;  4BKS B;  4B9K E;  2VKP A;  2NZ0 B;  4U2N A;  4CRH A;  2P1Q A;  1VCB B;  4JTD B;  2C9W C;  5BXB A;  1CS3 A;  3KVT A;  1NN7 A;  4U2M A;  4APF A;  3DRX A;  1FS1 B;  5EUP A;  4W9J B;  3OGK A;  4ZGC A;  3GA1 A;  3DCG B;  3HQI A;  3HU6 A;  2AST A;  2A79 B;  1BUO A;  1LDK D;  4J8Z A;  3ZRC B;  2Q81 A;  3ZKJ B;  1FS2 B;  4W9F B;  4N9F 5;  1LQB B;  3DRY A;  3MKS A;  3C6N A;  3OGM A;  5A6R A;  2P1P A;  3LUT B;  4EOZ A;  4I6J C;  1FQV B;  4UYI A;  1DSX A;  2P1N A;  3M5B A;  4W9K B;  5LLI B;  4B9K B;  4W9H H;  4AWJ B;  4CXJ A;  4B95 B;  2E31 B;  2FNJ C;  2VPK A;  5IBK A;  3ZRF B;  2IF5 A;  2MA9 C;  4AJY C;  3M8V A;  2OVQ A;  1EXB E;  5DAF A;  4CXI A;  5BXH A;  1EOF A;  2OVP A;  3C6O A;  3LBZ A;  4JTC B;  4JTA B;  3L2O A;  5H7H A;  1QDW A;  3WSO B;  3M52 A;  1HV2 A;  2R9R B;  1R28 A;  4BGC A;  3M4T A;  4YY8 A;  3BIM A;  3LNM B;  5A15 A;  4AP2 A;  3B84 A;  2NN2 A;  4UIJ A;  1P22 B;  4W9C B;  1LM8 C;  3OHV A;  2PPI A;  1R29 A;  3DRZ A;  5FTA A;  2Z8H A;  5H7G A;  3V7D A;  1EOE A;  3E4U A;  2P1M A;  3OHU A;  5BO4 C;  3OGL A;  2YY9 A;  1QDV A;  3HVE B;  4W9E B;  2I2R A;  2E32 B;  3HTM A;  3FKC A;  2JZ3 C;  3ZTC B;  1R2B A;  3ZNG B;  3ZUN B;  2ASS A;  2IHC A;  4CP3 A;  4W9D B;  4CXT A;  4HXI A;  4ZOU A;  1A68 A;  1EOD A;  5DAD A;  4BKT B;  4W9G B;  4W9L B;  2OVR A;  1T1D A;  1NEX A;  5HZG C;  4W9I B;  1S1G A;  3HVE A;  4U77 A;  5HYW B;  2IZV C; 
#chains in the Genus database with same CATH homology
 4WQO C;  5JH5 B;  4W9H B;  5BXD A;  3C6P A;  2P1O A;  3I3N A;  4JGH C;  3ZTD B;  4BKS B;  4B9K E;  2VKP A;  2NZ0 B;  4U2N A;  4CRH A;  2P1Q A;  1VCB B;  4JTD B;  2C9W C;  5BXB A;  1CS3 A;  3KVT A;  1NN7 A;  4U2M A;  4APF A;  3DRX A;  1FS1 B;  5EUP A;  4W9J B;  3OGK A;  4ZGC A;  3GA1 A;  3DCG B;  3HQI A;  3HU6 A;  2AST A;  2A79 B;  1BUO A;  1LDK D;  4J8Z A;  3ZRC B;  2Q81 A;  3ZKJ B;  1FS2 B;  4W9F B;  4N9F 5;  1LQB B;  3DRY A;  3MKS A;  3C6N A;  3OGM A;  5A6R A;  2P1P A;  3LUT B;  4EOZ A;  4I6J C;  1FQV B;  4UYI A;  1DSX A;  2P1N A;  3M5B A;  4W9K B;  5LLI B;  4B9K B;  4W9H H;  4AWJ B;  4CXJ A;  4B95 B;  2E31 B;  2FNJ C;  2VPK A;  5IBK A;  3ZRF B;  2IF5 A;  2MA9 C;  4AJY C;  3M8V A;  2OVQ A;  1EXB E;  5DAF A;  4CXI A;  5BXH A;  1EOF A;  2OVP A;  3C6O A;  3LBZ A;  4JTC B;  4JTA B;  3L2O A;  5H7H A;  1QDW A;  3WSO B;  3M52 A;  1HV2 A;  2R9R B;  1R28 A;  4BGC A;  3M4T A;  4YY8 A;  3BIM A;  3LNM B;  5A15 A;  4AP2 A;  3B84 A;  2NN2 A;  4UIJ A;  1P22 B;  4W9C B;  1LM8 C;  3OHV A;  2PPI A;  1R29 A;  3DRZ A;  5FTA A;  2Z8H A;  5H7G A;  3V7D A;  1EOE A;  3E4U A;  2P1M A;  3OHU A;  5BO4 C;  3OGL A;  2YY9 A;  1QDV A;  3HVE B;  4W9E B;  2I2R A;  2E32 B;  3HTM A;  3FKC A;  2JZ3 C;  3ZTC B;  1R2B A;  3ZNG B;  3ZUN B;  2ASS A;  2IHC A;  4CP3 A;  4W9D B;  4CXT A;  4HXI A;  4ZOU A;  1A68 A;  1EOD A;  5DAD A;  4BKT B;  4W9G B;  4W9L B;  2OVR A;  1T1D A;  1NEX A;  5HZG C;  4W9I B;  1S1G A;  3HVE A;  4U77 A;  5HYW B;  2IZV C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1R28A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations