1R29 | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	122
structure length	122
Chain Sequence	SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Mechanism of SMRT corepressor recruitment by the BCL6 BTB domain. pubmed doi rcsb
molecule keywords	B-cell lymphoma 6 protein
total genus	43
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	2003-09-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	1r29A00

4HXIA 2E32B 5IBKA 1EOEA 3BIMA 2I2RA 4UIJA 3C6OA 5DADA 3ZKJB 5A15A 1NN7A 4W9LB 3GA1A 3M8VA 5HYWB 3KVTA 1LDKD 3ZTDB 4CXIA 5BXDA 3V7DA 5JH5B 5HZGC 2P1MA 5BXHA 3OGKA 4WQOC 2IF5A 4BKSB 4W9EB 3ZRCB 3L2OA 2P1NA 2VPKA 2A79B 5BXBA 3B84A 4W9JB 2OVPA 3E4UA 1EODA 3LBZA 2P1QA 4JTDB 3M4TA 2JZ3C 2OVRA 3HVEA 4W9GB 4B9KE 5LLIB 3ZNGB 3WSOB 1A68A 5A6RA 3FKCA 2PPIA 4CXTA 1FQVB 4W9KB 2IHCA 2FNJC 4B9KB 5BO4C 1FS2B 4CXJA 4APFA 2MA9C 2YY9A 3ZTCB 4AWJB 2Q81A 4J8ZA 4JTAB 3ZUNB 5FTAA 1S1GA 1QDVA 3C6NA 3LUTB 2P1PA 3OGMA 4U2MA 1DSXA 4JGHC 4W9DB 3I3NA 4W9CB 4ZOUA 3HU6A 3ZRFB 1QDWA 4BGCA 3OHVA 1HV2A 2R9RB 2P1OA 1VCBB 4W9HB 3DRZA 5H7HA 4B95B 2NZ0B 2IZVC 2ASTA 3C6PA 3M52A 1P22B 1T1DA 2NN2A 1BUOA 4U77A 5H7GA 2Z8HA 2C9WC 4W9IB 5DAFA 4CP3A 3DCGB 2OVQA 4AP2A 4JTCB 4CRHA 3M5BA 1R2BA 1LQBB 3MKSA 3HTMA 4EOZA 4I6JC 3HVEB 2E31B 4W9FB 1R29A 1EOFA 1NEXA 5EUPA 3LNMB 4BKTB 4W9HH 4AJYC 3OHUA 4N9F5 3HQIA 1LM8C 3OGLA 4U2NA 1FS1B 1CS3A 2VKPA 1EXBE 4UYIA 2ASSA 1R28A
chains in the Genus database with same CATH superfamily

4HXIA 2E32B 5IBKA 1EOEA 3BIMA 2I2RA 4UIJA 3C6OA 5DADA 3ZKJB 5A15A 1NN7A 4W9LB 3GA1A 3M8VA 5HYWB 3KVTA 3DRXA 1LDKD 3ZTDB 4CXIA 5BXDA 3V7DA 5JH5B 5HZGC 2P1MA 5BXHA 3OGKA 4WQOC 2IF5A 4BKSB 4W9EB 3ZRCB 3L2OA 2P1NA 2VPKA 2A79B 5BXBA 3B84A 4W9JB 2OVPA 4ZGCA 3E4UA 1EODA 3LBZA 2P1QA 4JTDB 3M4TA 2JZ3C 2OVRA 3HVEA 4W9GB 4B9KE 5LLIB 3ZNGB 3WSOB 1A68A 4YY8A 5A6RA 3FKCA 2PPIA 4CXTA 1FQVB 4W9KB 2IHCA 2FNJC 4B9KB 5BO4C 1FS2B 4CXJA 4APFA 2MA9C 2YY9A 3ZTCB 4AWJB 2Q81A 4J8ZA 4JTAB 3ZUNB 5FTAA 1S1GA 1QDVA 3C6NA 3LUTB 2P1PA 3OGMA 4U2MA 1DSXA 4JGHC 4W9DB 3I3NA 4W9CB 4ZOUA 3HU6A 3ZRFB 1QDWA 3DRYA 4BGCA 3OHVA 1HV2A 2R9RB 2P1OA 1VCBB 4W9HB 3DRZA 5H7HA 4B95B 2NZ0B 2IZVC 2ASTA 3C6PA 3M52A 1P22B 1T1DA 2NN2A 1BUOA 4U77A 5H7GA 2Z8HA 2C9WC 4W9IB 5DAFA 4CP3A 3DCGB 2OVQA 4AP2A 4JTCB 4CRHA 3M5BA 1R2BA 1LQBB 3MKSA 3HTMA 4EOZA 4I6JC 3HVEB 2E31B 4W9FB 1R29A 1EOFA 1NEXA 5EUPA 3LNMB 4BKTB 4W9HH 4AJYC 3OHUA 4N9F5 3HQIA 1LM8C 3OGLA 4U2NA 1FS1B 1CS3A 2VKPA 1EXBE 4UYIA 2ASSA 1R28A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4HXI A;  2E32 B;  5IBK A;  1EOE A;  3BIM A;  2I2R A;  4UIJ A;  3C6O A;  5DAD A;  3ZKJ B;  5A15 A;  1NN7 A;  4W9L B;  3GA1 A;  3M8V A;  5HYW B;  3KVT A;  1LDK D;  3ZTD B;  4CXI A;  5BXD A;  3V7D A;  5JH5 B;  5HZG C;  2P1M A;  5BXH A;  3OGK A;  4WQO C;  2IF5 A;  4BKS B;  4W9E B;  3ZRC B;  3L2O A;  2P1N A;  2VPK A;  2A79 B;  5BXB A;  3B84 A;  4W9J B;  2OVP A;  3E4U A;  1EOD A;  3LBZ A;  2P1Q A;  4JTD B;  3M4T A;  2JZ3 C;  2OVR A;  3HVE A;  4W9G B;  4B9K E;  5LLI B;  3ZNG B;  3WSO B;  1A68 A;  5A6R A;  3FKC A;  2PPI A;  4CXT A;  1FQV B;  4W9K B;  2IHC A;  2FNJ C;  4B9K B;  5BO4 C;  1FS2 B;  4CXJ A;  4APF A;  2MA9 C;  2YY9 A;  3ZTC B;  4AWJ B;  2Q81 A;  4J8Z A;  4JTA B;  3ZUN B;  5FTA A;  1S1G A;  1QDV A;  3C6N A;  3LUT B;  2P1P A;  3OGM A;  4U2M A;  1DSX A;  4JGH C;  4W9D B;  3I3N A;  4W9C B;  4ZOU A;  3HU6 A;  3ZRF B;  1QDW A;  4BGC A;  3OHV A;  1HV2 A;  2R9R B;  2P1O A;  1VCB B;  4W9H B;  3DRZ A;  5H7H A;  4B95 B;  2NZ0 B;  2IZV C;  2AST A;  3C6P A;  3M52 A;  1P22 B;  1T1D A;  2NN2 A;  1BUO A;  4U77 A;  5H7G A;  2Z8H A;  2C9W C;  4W9I B;  5DAF A;  4CP3 A;  3DCG B;  2OVQ A;  4AP2 A;  4JTC B;  4CRH A;  3M5B A;  1R2B A;  1LQB B;  3MKS A;  3HTM A;  4EOZ A;  4I6J C;  3HVE B;  2E31 B;  4W9F B;  1R29 A;  1EOF A;  1NEX A;  5EUP A;  3LNM B;  4BKT B;  4W9H H;  4AJY C;  3OHU A;  4N9F 5;  3HQI A;  1LM8 C;  3OGL A;  4U2N A;  1FS1 B;  1CS3 A;  2VKP A;  1EXB E;  4UYI A;  2ASS A;  1R28 A; 
#chains in the Genus database with same CATH topology
 4HXI A;  2E32 B;  5IBK A;  1EOE A;  3BIM A;  2I2R A;  4UIJ A;  3C6O A;  5DAD A;  3ZKJ B;  5A15 A;  1NN7 A;  4W9L B;  3GA1 A;  3M8V A;  5HYW B;  3KVT A;  3DRX A;  1LDK D;  3ZTD B;  4CXI A;  5BXD A;  3V7D A;  5JH5 B;  5HZG C;  2P1M A;  5BXH A;  3OGK A;  4WQO C;  2IF5 A;  4BKS B;  4W9E B;  3ZRC B;  3L2O A;  2P1N A;  2VPK A;  2A79 B;  5BXB A;  3B84 A;  4W9J B;  2OVP A;  4ZGC A;  3E4U A;  1EOD A;  3LBZ A;  2P1Q A;  4JTD B;  3M4T A;  2JZ3 C;  2OVR A;  3HVE A;  4W9G B;  4B9K E;  5LLI B;  3ZNG B;  3WSO B;  1A68 A;  4YY8 A;  5A6R A;  3FKC A;  2PPI A;  4CXT A;  1FQV B;  4W9K B;  2IHC A;  2FNJ C;  4B9K B;  5BO4 C;  1FS2 B;  4CXJ A;  4APF A;  2MA9 C;  2YY9 A;  3ZTC B;  4AWJ B;  2Q81 A;  4J8Z A;  4JTA B;  3ZUN B;  5FTA A;  1S1G A;  1QDV A;  3C6N A;  3LUT B;  2P1P A;  3OGM A;  4U2M A;  1DSX A;  4JGH C;  4W9D B;  3I3N A;  4W9C B;  4ZOU A;  3HU6 A;  3ZRF B;  1QDW A;  3DRY A;  4BGC A;  3OHV A;  1HV2 A;  2R9R B;  2P1O A;  1VCB B;  4W9H B;  3DRZ A;  5H7H A;  4B95 B;  2NZ0 B;  2IZV C;  2AST A;  3C6P A;  3M52 A;  1P22 B;  1T1D A;  2NN2 A;  1BUO A;  4U77 A;  5H7G A;  2Z8H A;  2C9W C;  4W9I B;  5DAF A;  4CP3 A;  3DCG B;  2OVQ A;  4AP2 A;  4JTC B;  4CRH A;  3M5B A;  1R2B A;  1LQB B;  3MKS A;  3HTM A;  4EOZ A;  4I6J C;  3HVE B;  2E31 B;  4W9F B;  1R29 A;  1EOF A;  1NEX A;  5EUP A;  3LNM B;  4BKT B;  4W9H H;  4AJY C;  3OHU A;  4N9F 5;  3HQI A;  1LM8 C;  3OGL A;  4U2N A;  1FS1 B;  1CS3 A;  2VKP A;  1EXB E;  4UYI A;  2ASS A;  1R28 A; 
#chains in the Genus database with same CATH homology
 4HXI A;  2E32 B;  5IBK A;  1EOE A;  3BIM A;  2I2R A;  4UIJ A;  3C6O A;  5DAD A;  3ZKJ B;  5A15 A;  1NN7 A;  4W9L B;  3GA1 A;  3M8V A;  5HYW B;  3KVT A;  3DRX A;  1LDK D;  3ZTD B;  4CXI A;  5BXD A;  3V7D A;  5JH5 B;  5HZG C;  2P1M A;  5BXH A;  3OGK A;  4WQO C;  2IF5 A;  4BKS B;  4W9E B;  3ZRC B;  3L2O A;  2P1N A;  2VPK A;  2A79 B;  5BXB A;  3B84 A;  4W9J B;  2OVP A;  4ZGC A;  3E4U A;  1EOD A;  3LBZ A;  2P1Q A;  4JTD B;  3M4T A;  2JZ3 C;  2OVR A;  3HVE A;  4W9G B;  4B9K E;  5LLI B;  3ZNG B;  3WSO B;  1A68 A;  4YY8 A;  5A6R A;  3FKC A;  2PPI A;  4CXT A;  1FQV B;  4W9K B;  2IHC A;  2FNJ C;  4B9K B;  5BO4 C;  1FS2 B;  4CXJ A;  4APF A;  2MA9 C;  2YY9 A;  3ZTC B;  4AWJ B;  2Q81 A;  4J8Z A;  4JTA B;  3ZUN B;  5FTA A;  1S1G A;  1QDV A;  3C6N A;  3LUT B;  2P1P A;  3OGM A;  4U2M A;  1DSX A;  4JGH C;  4W9D B;  3I3N A;  4W9C B;  4ZOU A;  3HU6 A;  3ZRF B;  1QDW A;  3DRY A;  4BGC A;  3OHV A;  1HV2 A;  2R9R B;  2P1O A;  1VCB B;  4W9H B;  3DRZ A;  5H7H A;  4B95 B;  2NZ0 B;  2IZV C;  2AST A;  3C6P A;  3M52 A;  1P22 B;  1T1D A;  2NN2 A;  1BUO A;  4U77 A;  5H7G A;  2Z8H A;  2C9W C;  4W9I B;  5DAF A;  4CP3 A;  3DCG B;  2OVQ A;  4AP2 A;  4JTC B;  4CRH A;  3M5B A;  1R2B A;  1LQB B;  3MKS A;  3HTM A;  4EOZ A;  4I6J C;  3HVE B;  2E31 B;  4W9F B;  1R29 A;  1EOF A;  1NEX A;  5EUP A;  3LNM B;  4BKT B;  4W9H H;  4AJY C;  3OHU A;  4N9F 5;  3HQI A;  1LM8 C;  3OGL A;  4U2N A;  1FS1 B;  1CS3 A;  2VKP A;  1EXB E;  4UYI A;  2ASS A;  1R28 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1R29A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations