1S1GA

Crystal structure of kv4.3 t1 domain
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
107
structure length
107
Chain Sequence
DELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (45-48)TIV3 (76-79)3H2 (70-74)S2 (49-54)AH1 (55-59)TIV2 (61-64)TVIII1 (59-62)3H1 (65-67)S3 (75-76)TI1 (77-80)AH2 (88-100)S4 (81-84)TI2 (106-109)S1 (41-46)Updating...
connected with : NaN
molecule tags Transport protein
source organism Homo sapiens
publication title Two N-terminal domains of Kv4 K(+) channels regulate binding to and modulation by KChIP1.
pubmed doi rcsb
molecule keywords Potassium voltage-gated channel subfamily D member 3
total genus 35
structure length 107
sequence length 107
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02214 BTB_2 BTB/POZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1s1gA00
1NN7A 2P1OA 3V7DA 2I2RA 4U77A 1FS1B 2NN2A 3I3NA 5BXDA 4W9FB 4B95B 3ZKJB 5HYWB 1EODA 1R28A 3LNMB 4JGHC 5BXHA 4CXTA 2P1NA 1LM8C 2IHCA 2C9WC 2IF5A 3C6PA 3FKCA 3WSOB 4CRHA 2OVPA 3LUTB 3OHVA 4W9CB 3LBZA 4JTAB 2VPKA 2VKPA 3ZNGB 3M8VA 4W9LB 3BIMA 1EOEA 1EXBE 5BO4C 2R9RB 3HVEB 4W9GB 4BGCA 4HXIA 3M5BA 3HQIA 2ASSA 2OVRA 3HVEA 1A68A 3E4UA 1QDVA 4U2MA 5A15A 3HTMA 3MKSA 4W9IB 1T1DA 4CXIA 5IBKA 5DAFA 3DCGB 3ZTDB 4CP3A 3ZRFB 3KVTA 4UYIA 2FNJC 4WQOC 5EUPA 2E31B 2OVQA 1S1GA 3L2OA 1R29A 3ZRCB 1LDKD 2IZVC 4JTCB 4EOZA 1VCBB 3ZUNB 4BKSB 3OGLA 3M52A 2P1PA 2NZ0B 4W9JB 5FTAA 5LLIB 4W9EB 4W9HH 1BUOA 4ZOUA 2YY9A 3ZTCB 4I6JC 4BKTB 1LQBB 1R2BA 1EOFA 4W9DB 5DADA 3DRZA 4AJYC 2MA9C 3OGMA 4JTDB 3B84A 3C6NA 1CS3A 2A79B 2Z8HA 5A6RA 3GA1A 3OHUA 1QDWA 1DSXA 1FQVB 4APFA 1P22B 1NEXA 5HZGC 5JH5B 4AWJB 4N9F5 4B9KE 2Q81A 4J8ZA 3OGKA 2P1QA 1FS2B 3M4TA 4UIJA 5BXBA 5H7GA 4W9HB 4CXJA 4B9KB 2PPIA 3C6OA 2ASTA 4U2NA 3HU6A 4W9KB 2P1MA 2JZ3C 5H7HA 4AP2A 1HV2A 2E32B
chains in the Genus database with same CATH superfamily
1NN7A 2P1OA 3V7DA 2I2RA 4U77A 1FS1B 2NN2A 3I3NA 3DRXA 5BXDA 4W9FB 4B95B 3ZKJB 5HYWB 1EODA 1R28A 3LNMB 4JGHC 5BXHA 4CXTA 2P1NA 1LM8C 2IHCA 2C9WC 2IF5A 3C6PA 3FKCA 3WSOB 4CRHA 2OVPA 3LUTB 3OHVA 4W9CB 3LBZA 4JTAB 2VPKA 2VKPA 3ZNGB 3M8VA 4W9LB 3BIMA 1EOEA 1EXBE 5BO4C 2R9RB 3HVEB 4W9GB 4BGCA 4HXIA 3M5BA 3HQIA 2ASSA 2OVRA 3HVEA 1A68A 3E4UA 1QDVA 4U2MA 5A15A 3HTMA 3MKSA 4W9IB 1T1DA 4CXIA 5IBKA 5DAFA 3DCGB 3ZTDB 4CP3A 3ZRFB 3KVTA 4UYIA 2FNJC 4WQOC 5EUPA 2E31B 2OVQA 1S1GA 3L2OA 1R29A 3ZRCB 1LDKD 2IZVC 4JTCB 4EOZA 1VCBB 3ZUNB 4YY8A 4BKSB 3OGLA 3M52A 2P1PA 2NZ0B 4W9JB 5FTAA 5LLIB 4W9EB 4W9HH 1BUOA 4ZOUA 4ZGCA 2YY9A 3ZTCB 4I6JC 4BKTB 1LQBB 1R2BA 1EOFA 4W9DB 5DADA 3DRZA 4AJYC 2MA9C 3OGMA 4JTDB 3B84A 3C6NA 1CS3A 2A79B 2Z8HA 5A6RA 3GA1A 3OHUA 1QDWA 1DSXA 1FQVB 4APFA 1P22B 1NEXA 5HZGC 5JH5B 4AWJB 4N9F5 4B9KE 2Q81A 4J8ZA 3OGKA 2P1QA 1FS2B 3M4TA 4UIJA 5BXBA 3DRYA 5H7GA 4W9HB 4CXJA 4B9KB 2PPIA 3C6OA 2ASTA 4U2NA 3HU6A 4W9KB 2P1MA 2JZ3C 5H7HA 4AP2A 1HV2A 2E32B
chains in the Genus database with same CATH topology
1NN7A 2P1OA 3V7DA 2I2RA 4U77A 1FS1B 2NN2A 3I3NA 3DRXA 5BXDA 4W9FB 4B95B 3ZKJB 5HYWB 1EODA 1R28A 3LNMB 4JGHC 5BXHA 4CXTA 2P1NA 1LM8C 2IHCA 2C9WC 2IF5A 3C6PA 3FKCA 3WSOB 4CRHA 2OVPA 3LUTB 3OHVA 4W9CB 3LBZA 4JTAB 2VPKA 2VKPA 3ZNGB 3M8VA 4W9LB 3BIMA 1EOEA 1EXBE 5BO4C 2R9RB 3HVEB 4W9GB 4BGCA 4HXIA 3M5BA 3HQIA 2ASSA 2OVRA 3HVEA 1A68A 3E4UA 1QDVA 4U2MA 5A15A 3HTMA 3MKSA 4W9IB 1T1DA 4CXIA 5IBKA 5DAFA 3DCGB 3ZTDB 4CP3A 3ZRFB 3KVTA 4UYIA 2FNJC 4WQOC 5EUPA 2E31B 2OVQA 1S1GA 3L2OA 1R29A 3ZRCB 1LDKD 2IZVC 4JTCB 4EOZA 1VCBB 3ZUNB 4YY8A 4BKSB 3OGLA 3M52A 2P1PA 2NZ0B 4W9JB 5FTAA 5LLIB 4W9EB 4W9HH 1BUOA 4ZOUA 4ZGCA 2YY9A 3ZTCB 4I6JC 4BKTB 1LQBB 1R2BA 1EOFA 4W9DB 5DADA 3DRZA 4AJYC 2MA9C 3OGMA 4JTDB 3B84A 3C6NA 1CS3A 2A79B 2Z8HA 5A6RA 3GA1A 3OHUA 1QDWA 1DSXA 1FQVB 4APFA 1P22B 1NEXA 5HZGC 5JH5B 4AWJB 4N9F5 4B9KE 2Q81A 4J8ZA 3OGKA 2P1QA 1FS2B 3M4TA 4UIJA 5BXBA 3DRYA 5H7GA 4W9HB 4CXJA 4B9KB 2PPIA 3C6OA 2ASTA 4U2NA 3HU6A 4W9KB 2P1MA 2JZ3C 5H7HA 4AP2A 1HV2A 2E32B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1NN7 A;  2P1O A;  3V7D A;  2I2R A;  4U77 A;  1FS1 B;  2NN2 A;  3I3N A;  5BXD A;  4W9F B;  4B95 B;  3ZKJ B;  5HYW B;  1EOD A;  1R28 A;  3LNM B;  4JGH C;  5BXH A;  4CXT A;  2P1N A;  1LM8 C;  2IHC A;  2C9W C;  2IF5 A;  3C6P A;  3FKC A;  3WSO B;  4CRH A;  2OVP A;  3LUT B;  3OHV A;  4W9C B;  3LBZ A;  4JTA B;  2VPK A;  2VKP A;  3ZNG B;  3M8V A;  4W9L B;  3BIM A;  1EOE A;  1EXB E;  5BO4 C;  2R9R B;  3HVE B;  4W9G B;  4BGC A;  4HXI A;  3M5B A;  3HQI A;  2ASS A;  2OVR A;  3HVE A;  1A68 A;  3E4U A;  1QDV A;  4U2M A;  5A15 A;  3HTM A;  3MKS A;  4W9I B;  1T1D A;  4CXI A;  5IBK A;  5DAF A;  3DCG B;  3ZTD B;  4CP3 A;  3ZRF B;  3KVT A;  4UYI A;  2FNJ C;  4WQO C;  5EUP A;  2E31 B;  2OVQ A;  1S1G A;  3L2O A;  1R29 A;  3ZRC B;  1LDK D;  2IZV C;  4JTC B;  4EOZ A;  1VCB B;  3ZUN B;  4BKS B;  3OGL A;  3M52 A;  2P1P A;  2NZ0 B;  4W9J B;  5FTA A;  5LLI B;  4W9E B;  4W9H H;  1BUO A;  4ZOU A;  2YY9 A;  3ZTC B;  4I6J C;  4BKT B;  1LQB B;  1R2B A;  1EOF A;  4W9D B;  5DAD A;  3DRZ A;  4AJY C;  2MA9 C;  3OGM A;  4JTD B;  3B84 A;  3C6N A;  1CS3 A;  2A79 B;  2Z8H A;  5A6R A;  3GA1 A;  3OHU A;  1QDW A;  1DSX A;  1FQV B;  4APF A;  1P22 B;  1NEX A;  5HZG C;  5JH5 B;  4AWJ B;  4N9F 5;  4B9K E;  2Q81 A;  4J8Z A;  3OGK A;  2P1Q A;  1FS2 B;  3M4T A;  4UIJ A;  5BXB A;  5H7G A;  4W9H B;  4CXJ A;  4B9K B;  2PPI A;  3C6O A;  2AST A;  4U2N A;  3HU6 A;  4W9K B;  2P1M A;  2JZ3 C;  5H7H A;  4AP2 A;  1HV2 A;  2E32 B; 
#chains in the Genus database with same CATH topology
 1NN7 A;  2P1O A;  3V7D A;  2I2R A;  4U77 A;  1FS1 B;  2NN2 A;  3I3N A;  3DRX A;  5BXD A;  4W9F B;  4B95 B;  3ZKJ B;  5HYW B;  1EOD A;  1R28 A;  3LNM B;  4JGH C;  5BXH A;  4CXT A;  2P1N A;  1LM8 C;  2IHC A;  2C9W C;  2IF5 A;  3C6P A;  3FKC A;  3WSO B;  4CRH A;  2OVP A;  3LUT B;  3OHV A;  4W9C B;  3LBZ A;  4JTA B;  2VPK A;  2VKP A;  3ZNG B;  3M8V A;  4W9L B;  3BIM A;  1EOE A;  1EXB E;  5BO4 C;  2R9R B;  3HVE B;  4W9G B;  4BGC A;  4HXI A;  3M5B A;  3HQI A;  2ASS A;  2OVR A;  3HVE A;  1A68 A;  3E4U A;  1QDV A;  4U2M A;  5A15 A;  3HTM A;  3MKS A;  4W9I B;  1T1D A;  4CXI A;  5IBK A;  5DAF A;  3DCG B;  3ZTD B;  4CP3 A;  3ZRF B;  3KVT A;  4UYI A;  2FNJ C;  4WQO C;  5EUP A;  2E31 B;  2OVQ A;  1S1G A;  3L2O A;  1R29 A;  3ZRC B;  1LDK D;  2IZV C;  4JTC B;  4EOZ A;  1VCB B;  3ZUN B;  4YY8 A;  4BKS B;  3OGL A;  3M52 A;  2P1P A;  2NZ0 B;  4W9J B;  5FTA A;  5LLI B;  4W9E B;  4W9H H;  1BUO A;  4ZOU A;  4ZGC A;  2YY9 A;  3ZTC B;  4I6J C;  4BKT B;  1LQB B;  1R2B A;  1EOF A;  4W9D B;  5DAD A;  3DRZ A;  4AJY C;  2MA9 C;  3OGM A;  4JTD B;  3B84 A;  3C6N A;  1CS3 A;  2A79 B;  2Z8H A;  5A6R A;  3GA1 A;  3OHU A;  1QDW A;  1DSX A;  1FQV B;  4APF A;  1P22 B;  1NEX A;  5HZG C;  5JH5 B;  4AWJ B;  4N9F 5;  4B9K E;  2Q81 A;  4J8Z A;  3OGK A;  2P1Q A;  1FS2 B;  3M4T A;  4UIJ A;  5BXB A;  3DRY A;  5H7G A;  4W9H B;  4CXJ A;  4B9K B;  2PPI A;  3C6O A;  2AST A;  4U2N A;  3HU6 A;  4W9K B;  2P1M A;  2JZ3 C;  5H7H A;  4AP2 A;  1HV2 A;  2E32 B; 
#chains in the Genus database with same CATH homology
 1NN7 A;  2P1O A;  3V7D A;  2I2R A;  4U77 A;  1FS1 B;  2NN2 A;  3I3N A;  3DRX A;  5BXD A;  4W9F B;  4B95 B;  3ZKJ B;  5HYW B;  1EOD A;  1R28 A;  3LNM B;  4JGH C;  5BXH A;  4CXT A;  2P1N A;  1LM8 C;  2IHC A;  2C9W C;  2IF5 A;  3C6P A;  3FKC A;  3WSO B;  4CRH A;  2OVP A;  3LUT B;  3OHV A;  4W9C B;  3LBZ A;  4JTA B;  2VPK A;  2VKP A;  3ZNG B;  3M8V A;  4W9L B;  3BIM A;  1EOE A;  1EXB E;  5BO4 C;  2R9R B;  3HVE B;  4W9G B;  4BGC A;  4HXI A;  3M5B A;  3HQI A;  2ASS A;  2OVR A;  3HVE A;  1A68 A;  3E4U A;  1QDV A;  4U2M A;  5A15 A;  3HTM A;  3MKS A;  4W9I B;  1T1D A;  4CXI A;  5IBK A;  5DAF A;  3DCG B;  3ZTD B;  4CP3 A;  3ZRF B;  3KVT A;  4UYI A;  2FNJ C;  4WQO C;  5EUP A;  2E31 B;  2OVQ A;  1S1G A;  3L2O A;  1R29 A;  3ZRC B;  1LDK D;  2IZV C;  4JTC B;  4EOZ A;  1VCB B;  3ZUN B;  4YY8 A;  4BKS B;  3OGL A;  3M52 A;  2P1P A;  2NZ0 B;  4W9J B;  5FTA A;  5LLI B;  4W9E B;  4W9H H;  1BUO A;  4ZOU A;  4ZGC A;  2YY9 A;  3ZTC B;  4I6J C;  4BKT B;  1LQB B;  1R2B A;  1EOF A;  4W9D B;  5DAD A;  3DRZ A;  4AJY C;  2MA9 C;  3OGM A;  4JTD B;  3B84 A;  3C6N A;  1CS3 A;  2A79 B;  2Z8H A;  5A6R A;  3GA1 A;  3OHU A;  1QDW A;  1DSX A;  1FQV B;  4APF A;  1P22 B;  1NEX A;  5HZG C;  5JH5 B;  4AWJ B;  4N9F 5;  4B9K E;  2Q81 A;  4J8Z A;  3OGK A;  2P1Q A;  1FS2 B;  3M4T A;  4UIJ A;  5BXB A;  3DRY A;  5H7G A;  4W9H B;  4CXJ A;  4B9K B;  2PPI A;  3C6O A;  2AST A;  4U2N A;  3HU6 A;  4W9K B;  2P1M A;  2JZ3 C;  5H7H A;  4AP2 A;  1HV2 A;  2E32 B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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