1WHBA

Solution structure of the rhodanese-like domain in human ubiquitin specific protease 8 (ubp8)
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
157
structure length
157
Chain Sequence
GSSGSSGKCETKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCYPQYTTNAKVSGPSSG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution structure of the Rhodanese-like domain in human ubiquitin specific protease 8 (UBP8)
rcsb
molecule tags Hydrolase
source organism Homo sapiens
molecule keywords KIAA0055
total genus 21
structure length 157
sequence length 157
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2004-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 1whbA01
2MRMA 4F67A 2EG4A 2JTRA 1YMKA 5HBOA 3OP3A 2JTSA 3AAYA 2WLXA 4JGTA 1E0CA 1VEEA 3FLHA 1CWRA 1YMDA 2EG4B 1CWSA 3FOJA 1ORBA 2A2KA 2GWFA 4WH9A 3TG1B 1CWTA 3F4AA 3TP9A 1H4KX 1GN0A 2UZQA 2FSXA 2J6PA 3P3AA 2IFVA 3IPPA 1QXNA 3TG3A 3D1PA 3ICSA 5HBQA 3HIXA 1YT8A 1GMXA 2MOIA 3HZUA 1DP2A 1QB0A 1T3KA 2ORAA 1OKGA 3FS5A 3UTNX 3I2VA 4WH7A 1H4MX 3K9RA 1URHA 3AAXA 3NT6A 1BOHA 1RHSA 3IWHA 5HBLA 5HPAA 3ILMA 2HHGA 2K0ZA 3NTDA 5LAOA 2DCQA 3HWIA 1TQ1A 1UARA 3GK5A 1WV9A 1YMLA 2WLRA 3FNJA 2MOLA 2OUCA 5LAMA 4OCGA 3NTAA 1HZMA 3OLHA 3IPOA 3R2UA 3G5JA 1BOIA 1YS0A 5HBPA 2VSWA 3ICTA 1WHBA 2KL3A 3O3WA 3MZZA 2IFDA 2EG3A 3ICRA 3I3UA 1RHDA 2JTQA 3NHVA 1C25A 1YM9A
chains in the Genus database with same CATH superfamily
2MRMA 4F67A 2EG4A 2JTRA 1YMKA 5HBOA 3OP3A 2JTSA 3AAYA 2WLXA 4JGTA 1E0CA 1VEEA 3FLHA 1CWRA 1YMDA 2EG4B 1CWSA 3FOJA 1ORBA 2A2KA 2GWFA 4WH9A 3TG1B 1CWTA 3F4AA 3TP9A 1H4KX 1GN0A 2UZQA 2FSXA 2J6PA 3P3AA 2IFVA 3IPPA 1QXNA 3TG3A 3D1PA 3ICSA 5HBQA 3HIXA 1YT8A 1GMXA 2MOIA 3HZUA 1DP2A 1QB0A 1T3KA 2ORAA 1OKGA 3FS5A 3UTNX 3I2VA 4WH7A 1H4MX 3K9RA 1URHA 3AAXA 3NT6A 1BOHA 1RHSA 3IWHA 5HBLA 5HPAA 3ILMA 2HHGA 2K0ZA 3NTDA 5LAOA 2DCQA 3HWIA 1TQ1A 1UARA 3GK5A 1WV9A 1YMLA 2WLRA 3FNJA 2MOLA 2OUCA 5LAMA 4OCGA 3NTAA 1HZMA 3OLHA 3IPOA 3R2UA 2Q82A 3G5JA 1BOIA 1YS0A 5HBPA 2VSWA 3ICTA 1WHBA 2KL3A 3O3WA 3MZZA 2IFDA 2EG3A 3ICRA 3I3UA 1RHDA 2JTQA 3NHVA 1C25A 1YM9A
chains in the Genus database with same CATH topology
2MRMA 4F67A 2EG4A 2JTRA 1YMKA 5HBOA 3OP3A 2JTSA 3AAYA 2WLXA 4JGTA 1E0CA 1VEEA 3FLHA 1CWRA 1YMDA 2EG4B 1CWSA 3FOJA 1ORBA 2A2KA 2GWFA 4WH9A 3TG1B 1CWTA 3F4AA 3TP9A 1H4KX 1GN0A 2UZQA 2FSXA 2J6PA 3P3AA 2IFVA 3IPPA 1QXNA 3TG3A 3D1PA 3ICSA 5HBQA 3HIXA 1YT8A 1GMXA 2MOIA 3HZUA 1DP2A 1QB0A 1T3KA 2ORAA 1OKGA 3FS5A 3UTNX 3I2VA 4WH7A 1H4MX 3K9RA 1URHA 3AAXA 3NT6A 1BOHA 1RHSA 3IWHA 5HBLA 5HPAA 3ILMA 2HHGA 2K0ZA 3NTDA 5LAOA 2DCQA 3HWIA 1TQ1A 1UARA 3GK5A 1WV9A 1YMLA 2WLRA 3FNJA 2MOLA 2OUCA 5LAMA 4OCGA 3NTAA 1HZMA 3OLHA 3IPOA 3R2UA 3G5JA 1BOIA 1YS0A 5HBPA 2VSWA 3ICTA 1WHBA 2KL3A 3O3WA 3MZZA 2IFDA 2EG3A 3ICRA 3I3UA 1RHDA 2JTQA 3NHVA 1C25A 1YM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MRM A;  4F67 A;  2EG4 A;  2JTR A;  1YMK A;  5HBO A;  3OP3 A;  2JTS A;  3AAY A;  2WLX A;  4JGT A;  1E0C A;  1VEE A;  3FLH A;  1CWR A;  1YMD A;  2EG4 B;  1CWS A;  3FOJ A;  1ORB A;  2A2K A;  2GWF A;  4WH9 A;  3TG1 B;  1CWT A;  3F4A A;  3TP9 A;  1H4K X;  1GN0 A;  2UZQ A;  2FSX A;  2J6P A;  3P3A A;  2IFV A;  3IPP A;  1QXN A;  3TG3 A;  3D1P A;  3ICS A;  5HBQ A;  3HIX A;  1YT8 A;  1GMX A;  2MOI A;  3HZU A;  1DP2 A;  1QB0 A;  1T3K A;  2ORA A;  1OKG A;  3FS5 A;  3UTN X;  3I2V A;  4WH7 A;  1H4M X;  3K9R A;  1URH A;  3AAX A;  3NT6 A;  1BOH A;  1RHS A;  3IWH A;  5HBL A;  5HPA A;  3ILM A;  2HHG A;  2K0Z A;  3NTD A;  5LAO A;  2DCQ A;  3HWI A;  1TQ1 A;  1UAR A;  3GK5 A;  1WV9 A;  1YML A;  2WLR A;  3FNJ A;  2MOL A;  2OUC A;  5LAM A;  4OCG A;  3NTA A;  1HZM A;  3OLH A;  3IPO A;  3R2U A;  3G5J A;  1BOI A;  1YS0 A;  5HBP A;  2VSW A;  3ICT A;  1WHB A;  2KL3 A;  3O3W A;  3MZZ A;  2IFD A;  2EG3 A;  3ICR A;  3I3U A;  1RHD A;  2JTQ A;  3NHV A;  1C25 A;  1YM9 A; 
#chains in the Genus database with same CATH topology
 2MRM A;  4F67 A;  2EG4 A;  2JTR A;  1YMK A;  5HBO A;  3OP3 A;  2JTS A;  3AAY A;  2WLX A;  4JGT A;  1E0C A;  1VEE A;  3FLH A;  1CWR A;  1YMD A;  2EG4 B;  1CWS A;  3FOJ A;  1ORB A;  2A2K A;  2GWF A;  4WH9 A;  3TG1 B;  1CWT A;  3F4A A;  3TP9 A;  1H4K X;  1GN0 A;  2UZQ A;  2FSX A;  2J6P A;  3P3A A;  2IFV A;  3IPP A;  1QXN A;  3TG3 A;  3D1P A;  3ICS A;  5HBQ A;  3HIX A;  1YT8 A;  1GMX A;  2MOI A;  3HZU A;  1DP2 A;  1QB0 A;  1T3K A;  2ORA A;  1OKG A;  3FS5 A;  3UTN X;  3I2V A;  4WH7 A;  1H4M X;  3K9R A;  1URH A;  3AAX A;  3NT6 A;  1BOH A;  1RHS A;  3IWH A;  5HBL A;  5HPA A;  3ILM A;  2HHG A;  2K0Z A;  3NTD A;  5LAO A;  2DCQ A;  3HWI A;  1TQ1 A;  1UAR A;  3GK5 A;  1WV9 A;  1YML A;  2WLR A;  3FNJ A;  2MOL A;  2OUC A;  5LAM A;  4OCG A;  3NTA A;  1HZM A;  3OLH A;  3IPO A;  3R2U A;  2Q82 A;  3G5J A;  1BOI A;  1YS0 A;  5HBP A;  2VSW A;  3ICT A;  1WHB A;  2KL3 A;  3O3W A;  3MZZ A;  2IFD A;  2EG3 A;  3ICR A;  3I3U A;  1RHD A;  2JTQ A;  3NHV A;  1C25 A;  1YM9 A; 
#chains in the Genus database with same CATH homology
 2MRM A;  4F67 A;  2EG4 A;  2JTR A;  1YMK A;  5HBO A;  3OP3 A;  2JTS A;  3AAY A;  2WLX A;  4JGT A;  1E0C A;  1VEE A;  3FLH A;  1CWR A;  1YMD A;  2EG4 B;  1CWS A;  3FOJ A;  1ORB A;  2A2K A;  2GWF A;  4WH9 A;  3TG1 B;  1CWT A;  3F4A A;  3TP9 A;  1H4K X;  1GN0 A;  2UZQ A;  2FSX A;  2J6P A;  3P3A A;  2IFV A;  3IPP A;  1QXN A;  3TG3 A;  3D1P A;  3ICS A;  5HBQ A;  3HIX A;  1YT8 A;  1GMX A;  2MOI A;  3HZU A;  1DP2 A;  1QB0 A;  1T3K A;  2ORA A;  1OKG A;  3FS5 A;  3UTN X;  3I2V A;  4WH7 A;  1H4M X;  3K9R A;  1URH A;  3AAX A;  3NT6 A;  1BOH A;  1RHS A;  3IWH A;  5HBL A;  5HPA A;  3ILM A;  2HHG A;  2K0Z A;  3NTD A;  5LAO A;  2DCQ A;  3HWI A;  1TQ1 A;  1UAR A;  3GK5 A;  1WV9 A;  1YML A;  2WLR A;  3FNJ A;  2MOL A;  2OUC A;  5LAM A;  4OCG A;  3NTA A;  1HZM A;  3OLH A;  3IPO A;  3R2U A;  3G5J A;  1BOI A;  1YS0 A;  5HBP A;  2VSW A;  3ICT A;  1WHB A;  2KL3 A;  3O3W A;  3MZZ A;  2IFD A;  2EG3 A;  3ICR A;  3I3U A;  1RHD A;  2JTQ A;  3NHV A;  1C25 A;  1YM9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...