2KL3A

Solution nmr structure of the rhodanese-like domain from anabaena sp alr3790 protein. northeast structural genomics consortium target nsr437a
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
132
structure length
132
Chain Sequence
MEPQSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGIIESRTPAGADDYNVVSRLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Alr3790 protein
publication title Solution NMR structure of the Rhodanese-like domain from Anabaena sp Alr3790 protein. Northeast Structural Genomics Consortium Target NsR437A
rcsb
source organism Nostoc sp.
total genus 41
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2009-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2kl3A01
3TP9A 2DCQA 1GN0A 3NHVA 1BOHA 3NT6A 5HPAA 4F67A 1RHDA 2EG3A 2EG4A 1WHBA 5HBOA 1RHSA 3F4AA 3TG3A 2JTQA 3UTNX 1CWSA 1VEEA 2MOLA 1YMDA 2EG4B 4WH9A 3NTAA 1GMXA 3I3UA 4WH7A 3OLHA 1HZMA 2WLXA 3HWIA 3K9RA 3AAYA 2J6PA 3HIXA 3FS5A 2JTSA 3OP3A 1C25A 3ICRA 2VSWA 3ICSA 2ORAA 2HHGA 3MZZA 3AAXA 1CWRA 2WLRA 3IWHA 1T3KA 1DP2A 4OCGA 1H4MX 3R2UA 1YMKA 2JTRA 1YT8A 1QB0A 1ORBA 1UARA 4JGTA 2UZQA 2A2KA 3IPPA 1YS0A 3FOJA 2K0ZA 3ILMA 2MRMA 2GWFA 5LAMA 1WV9A 3O3WA 2IFDA 3ICTA 3I2VA 3G5JA 3GK5A 1QXNA 5HBQA 2MOIA 3TG1B 5HBLA 2IFVA 2OUCA 1TQ1A 3HZUA 1BOIA 3FLHA 2KL3A 3IPOA 1H4KX 5HBPA 3NTDA 1OKGA 3FNJA 3P3AA 2FSXA 1YM9A 5LAOA 1E0CA 1CWTA 3D1PA 1URHA 1YMLA
chains in the Genus database with same CATH superfamily
3TP9A 2DCQA 1GN0A 3NHVA 1BOHA 3NT6A 5HPAA 4F67A 1RHDA 2EG3A 2EG4A 1WHBA 5HBOA 1RHSA 3F4AA 3TG3A 2JTQA 3UTNX 1CWSA 1VEEA 2MOLA 1YMDA 2EG4B 4WH9A 3NTAA 1GMXA 3I3UA 4WH7A 3OLHA 1HZMA 2WLXA 3HWIA 3K9RA 3AAYA 2J6PA 3HIXA 3FS5A 2JTSA 3OP3A 1C25A 3ICRA 2VSWA 3ICSA 2ORAA 2HHGA 3MZZA 3AAXA 1CWRA 2WLRA 3IWHA 1T3KA 1DP2A 4OCGA 1H4MX 3R2UA 1YMKA 2JTRA 1YT8A 1QB0A 1ORBA 1UARA 4JGTA 2UZQA 2A2KA 3IPPA 1YS0A 3FOJA 2K0ZA 2Q82A 3ILMA 2MRMA 2GWFA 5LAMA 1WV9A 3O3WA 2IFDA 3ICTA 3I2VA 3G5JA 3GK5A 1QXNA 5HBQA 2MOIA 3TG1B 5HBLA 2IFVA 2OUCA 1TQ1A 3HZUA 1BOIA 3FLHA 2KL3A 3IPOA 1H4KX 5HBPA 3NTDA 1OKGA 3FNJA 3P3AA 2FSXA 1YM9A 5LAOA 1E0CA 1CWTA 3D1PA 1URHA 1YMLA
chains in the Genus database with same CATH topology
3TP9A 2DCQA 1GN0A 3NHVA 1BOHA 3NT6A 5HPAA 4F67A 1RHDA 2EG3A 2EG4A 1WHBA 5HBOA 1RHSA 3F4AA 3TG3A 2JTQA 3UTNX 1CWSA 1VEEA 2MOLA 1YMDA 2EG4B 4WH9A 3NTAA 1GMXA 3I3UA 4WH7A 3OLHA 1HZMA 2WLXA 3HWIA 3K9RA 3AAYA 2J6PA 3HIXA 3FS5A 2JTSA 3OP3A 1C25A 3ICRA 2VSWA 3ICSA 2ORAA 2HHGA 3MZZA 3AAXA 1CWRA 2WLRA 3IWHA 1T3KA 1DP2A 4OCGA 1H4MX 3R2UA 1YMKA 2JTRA 1YT8A 1QB0A 1ORBA 1UARA 4JGTA 2UZQA 2A2KA 3IPPA 1YS0A 3FOJA 2K0ZA 3ILMA 2MRMA 2GWFA 5LAMA 1WV9A 3O3WA 2IFDA 3ICTA 3I2VA 3G5JA 3GK5A 1QXNA 5HBQA 2MOIA 3TG1B 5HBLA 2IFVA 2OUCA 1TQ1A 3HZUA 1BOIA 3FLHA 2KL3A 3IPOA 1H4KX 5HBPA 3NTDA 1OKGA 3FNJA 3P3AA 2FSXA 1YM9A 5LAOA 1E0CA 1CWTA 3D1PA 1URHA 1YMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TP9 A;  2DCQ A;  1GN0 A;  3NHV A;  1BOH A;  3NT6 A;  5HPA A;  4F67 A;  1RHD A;  2EG3 A;  2EG4 A;  1WHB A;  5HBO A;  1RHS A;  3F4A A;  3TG3 A;  2JTQ A;  3UTN X;  1CWS A;  1VEE A;  2MOL A;  1YMD A;  2EG4 B;  4WH9 A;  3NTA A;  1GMX A;  3I3U A;  4WH7 A;  3OLH A;  1HZM A;  2WLX A;  3HWI A;  3K9R A;  3AAY A;  2J6P A;  3HIX A;  3FS5 A;  2JTS A;  3OP3 A;  1C25 A;  3ICR A;  2VSW A;  3ICS A;  2ORA A;  2HHG A;  3MZZ A;  3AAX A;  1CWR A;  2WLR A;  3IWH A;  1T3K A;  1DP2 A;  4OCG A;  1H4M X;  3R2U A;  1YMK A;  2JTR A;  1YT8 A;  1QB0 A;  1ORB A;  1UAR A;  4JGT A;  2UZQ A;  2A2K A;  3IPP A;  1YS0 A;  3FOJ A;  2K0Z A;  3ILM A;  2MRM A;  2GWF A;  5LAM A;  1WV9 A;  3O3W A;  2IFD A;  3ICT A;  3I2V A;  3G5J A;  3GK5 A;  1QXN A;  5HBQ A;  2MOI A;  3TG1 B;  5HBL A;  2IFV A;  2OUC A;  1TQ1 A;  3HZU A;  1BOI A;  3FLH A;  2KL3 A;  3IPO A;  1H4K X;  5HBP A;  3NTD A;  1OKG A;  3FNJ A;  3P3A A;  2FSX A;  1YM9 A;  5LAO A;  1E0C A;  1CWT A;  3D1P A;  1URH A;  1YML A; 
#chains in the Genus database with same CATH topology
 3TP9 A;  2DCQ A;  1GN0 A;  3NHV A;  1BOH A;  3NT6 A;  5HPA A;  4F67 A;  1RHD A;  2EG3 A;  2EG4 A;  1WHB A;  5HBO A;  1RHS A;  3F4A A;  3TG3 A;  2JTQ A;  3UTN X;  1CWS A;  1VEE A;  2MOL A;  1YMD A;  2EG4 B;  4WH9 A;  3NTA A;  1GMX A;  3I3U A;  4WH7 A;  3OLH A;  1HZM A;  2WLX A;  3HWI A;  3K9R A;  3AAY A;  2J6P A;  3HIX A;  3FS5 A;  2JTS A;  3OP3 A;  1C25 A;  3ICR A;  2VSW A;  3ICS A;  2ORA A;  2HHG A;  3MZZ A;  3AAX A;  1CWR A;  2WLR A;  3IWH A;  1T3K A;  1DP2 A;  4OCG A;  1H4M X;  3R2U A;  1YMK A;  2JTR A;  1YT8 A;  1QB0 A;  1ORB A;  1UAR A;  4JGT A;  2UZQ A;  2A2K A;  3IPP A;  1YS0 A;  3FOJ A;  2K0Z A;  2Q82 A;  3ILM A;  2MRM A;  2GWF A;  5LAM A;  1WV9 A;  3O3W A;  2IFD A;  3ICT A;  3I2V A;  3G5J A;  3GK5 A;  1QXN A;  5HBQ A;  2MOI A;  3TG1 B;  5HBL A;  2IFV A;  2OUC A;  1TQ1 A;  3HZU A;  1BOI A;  3FLH A;  2KL3 A;  3IPO A;  1H4K X;  5HBP A;  3NTD A;  1OKG A;  3FNJ A;  3P3A A;  2FSX A;  1YM9 A;  5LAO A;  1E0C A;  1CWT A;  3D1P A;  1URH A;  1YML A; 
#chains in the Genus database with same CATH homology
 3TP9 A;  2DCQ A;  1GN0 A;  3NHV A;  1BOH A;  3NT6 A;  5HPA A;  4F67 A;  1RHD A;  2EG3 A;  2EG4 A;  1WHB A;  5HBO A;  1RHS A;  3F4A A;  3TG3 A;  2JTQ A;  3UTN X;  1CWS A;  1VEE A;  2MOL A;  1YMD A;  2EG4 B;  4WH9 A;  3NTA A;  1GMX A;  3I3U A;  4WH7 A;  3OLH A;  1HZM A;  2WLX A;  3HWI A;  3K9R A;  3AAY A;  2J6P A;  3HIX A;  3FS5 A;  2JTS A;  3OP3 A;  1C25 A;  3ICR A;  2VSW A;  3ICS A;  2ORA A;  2HHG A;  3MZZ A;  3AAX A;  1CWR A;  2WLR A;  3IWH A;  1T3K A;  1DP2 A;  4OCG A;  1H4M X;  3R2U A;  1YMK A;  2JTR A;  1YT8 A;  1QB0 A;  1ORB A;  1UAR A;  4JGT A;  2UZQ A;  2A2K A;  3IPP A;  1YS0 A;  3FOJ A;  2K0Z A;  3ILM A;  2MRM A;  2GWF A;  5LAM A;  1WV9 A;  3O3W A;  2IFD A;  3ICT A;  3I2V A;  3G5J A;  3GK5 A;  1QXN A;  5HBQ A;  2MOI A;  3TG1 B;  5HBL A;  2IFV A;  2OUC A;  1TQ1 A;  3HZU A;  1BOI A;  3FLH A;  2KL3 A;  3IPO A;  1H4K X;  5HBP A;  3NTD A;  1OKG A;  3FNJ A;  3P3A A;  2FSX A;  1YM9 A;  5LAO A;  1E0C A;  1CWT A;  3D1P A;  1URH A;  1YML A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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