1WV9A

Crystal structure of rhodanese homolog tt1651 from an extremely thermophilic bacterium thermus thermophilus hb8
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
89
structure length
87
Chain Sequence
RKVRPEELPALLEEGVLVVDVRPARSTPLPFAAEWVPLEKIQKGEHGLPRRPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Thermus thermophilus
molecule keywords Rhodanese Homolog TT1651
total genus 19
structure length 87
sequence length 89
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-12-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 1wv9A00
3I3UA 1YS0A 2EG3A 2ORAA 3ICTA 1E0CA 5HPAA 1H4KX 5LAMA 1BOIA 1WHBA 1YT8A 1BOHA 3ILMA 2IFDA 2JTSA 3OLHA 3ICSA 3G5JA 1CWRA 1T3KA 2DCQA 2FSXA 3P3AA 4WH9A 2WLXA 2IFVA 2K0ZA 3HWIA 3NHVA 3OP3A 3HZUA 2JTRA 1TQ1A 2OUCA 3NTAA 2A2KA 5HBPA 3IPPA 3O3WA 1CWTA 3R2UA 1WV9A 2GWFA 1RHDA 1CWSA 1VEEA 1RHSA 3TG1B 1OKGA 4WH7A 5HBOA 3FS5A 1YM9A 3AAXA 2MOIA 2VSWA 5HBQA 1H4MX 1C25A 2WLRA 2KL3A 1URHA 4JGTA 2JTQA 1YMKA 2EG4A 2UZQA 3MZZA 3UTNX 3TG3A 2J6PA 3IPOA 1HZMA 1QB0A 1QXNA 3D1PA 3GK5A 3NT6A 3HIXA 3FNJA 3FLHA 1YMLA 1GMXA 3NTDA 2MRMA 1GN0A 3ICRA 4F67A 2MOLA 2EG4B 1YMDA 3K9RA 3AAYA 3TP9A 1DP2A 3F4AA 1ORBA 3I2VA 4OCGA 1UARA 3IWHA 5HBLA 3FOJA 2HHGA 5LAOA
chains in the Genus database with same CATH superfamily
3I3UA 1YS0A 2EG3A 2ORAA 3ICTA 1E0CA 5HPAA 1H4KX 5LAMA 1BOIA 1WHBA 1YT8A 1BOHA 3ILMA 2IFDA 2JTSA 3OLHA 3ICSA 3G5JA 1CWRA 1T3KA 2DCQA 2FSXA 3P3AA 4WH9A 2WLXA 2IFVA 2K0ZA 3HWIA 3NHVA 3OP3A 3HZUA 2JTRA 1TQ1A 2OUCA 3NTAA 2A2KA 5HBPA 3IPPA 3O3WA 1CWTA 3R2UA 1WV9A 2GWFA 1RHDA 1CWSA 1VEEA 1RHSA 3TG1B 1OKGA 4WH7A 5HBOA 3FS5A 1YM9A 3AAXA 2MOIA 2VSWA 5HBQA 1H4MX 1C25A 2WLRA 2KL3A 1URHA 4JGTA 2JTQA 1YMKA 2EG4A 2UZQA 2Q82A 3MZZA 3UTNX 3TG3A 2J6PA 3IPOA 1HZMA 1QB0A 1QXNA 3D1PA 3GK5A 3NT6A 3HIXA 3FNJA 3FLHA 1YMLA 1GMXA 3NTDA 2MRMA 1GN0A 3ICRA 4F67A 2MOLA 2EG4B 1YMDA 3K9RA 3AAYA 3TP9A 1DP2A 3F4AA 1ORBA 3I2VA 4OCGA 1UARA 3IWHA 5HBLA 3FOJA 2HHGA 5LAOA
chains in the Genus database with same CATH topology
3I3UA 1YS0A 2EG3A 2ORAA 3ICTA 1E0CA 5HPAA 1H4KX 5LAMA 1BOIA 1WHBA 1YT8A 1BOHA 3ILMA 2IFDA 2JTSA 3OLHA 3ICSA 3G5JA 1CWRA 1T3KA 2DCQA 2FSXA 3P3AA 4WH9A 2WLXA 2IFVA 2K0ZA 3HWIA 3NHVA 3OP3A 3HZUA 2JTRA 1TQ1A 2OUCA 3NTAA 2A2KA 5HBPA 3IPPA 3O3WA 1CWTA 3R2UA 1WV9A 2GWFA 1RHDA 1CWSA 1VEEA 1RHSA 3TG1B 1OKGA 4WH7A 5HBOA 3FS5A 1YM9A 3AAXA 2MOIA 2VSWA 5HBQA 1H4MX 1C25A 2WLRA 2KL3A 1URHA 4JGTA 2JTQA 1YMKA 2EG4A 2UZQA 3MZZA 3UTNX 3TG3A 2J6PA 3IPOA 1HZMA 1QB0A 1QXNA 3D1PA 3GK5A 3NT6A 3HIXA 3FNJA 3FLHA 1YMLA 1GMXA 3NTDA 2MRMA 1GN0A 3ICRA 4F67A 2MOLA 2EG4B 1YMDA 3K9RA 3AAYA 3TP9A 1DP2A 3F4AA 1ORBA 3I2VA 4OCGA 1UARA 3IWHA 5HBLA 3FOJA 2HHGA 5LAOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I3U A;  1YS0 A;  2EG3 A;  2ORA A;  3ICT A;  1E0C A;  5HPA A;  1H4K X;  5LAM A;  1BOI A;  1WHB A;  1YT8 A;  1BOH A;  3ILM A;  2IFD A;  2JTS A;  3OLH A;  3ICS A;  3G5J A;  1CWR A;  1T3K A;  2DCQ A;  2FSX A;  3P3A A;  4WH9 A;  2WLX A;  2IFV A;  2K0Z A;  3HWI A;  3NHV A;  3OP3 A;  3HZU A;  2JTR A;  1TQ1 A;  2OUC A;  3NTA A;  2A2K A;  5HBP A;  3IPP A;  3O3W A;  1CWT A;  3R2U A;  1WV9 A;  2GWF A;  1RHD A;  1CWS A;  1VEE A;  1RHS A;  3TG1 B;  1OKG A;  4WH7 A;  5HBO A;  3FS5 A;  1YM9 A;  3AAX A;  2MOI A;  2VSW A;  5HBQ A;  1H4M X;  1C25 A;  2WLR A;  2KL3 A;  1URH A;  4JGT A;  2JTQ A;  1YMK A;  2EG4 A;  2UZQ A;  3MZZ A;  3UTN X;  3TG3 A;  2J6P A;  3IPO A;  1HZM A;  1QB0 A;  1QXN A;  3D1P A;  3GK5 A;  3NT6 A;  3HIX A;  3FNJ A;  3FLH A;  1YML A;  1GMX A;  3NTD A;  2MRM A;  1GN0 A;  3ICR A;  4F67 A;  2MOL A;  2EG4 B;  1YMD A;  3K9R A;  3AAY A;  3TP9 A;  1DP2 A;  3F4A A;  1ORB A;  3I2V A;  4OCG A;  1UAR A;  3IWH A;  5HBL A;  3FOJ A;  2HHG A;  5LAO A; 
#chains in the Genus database with same CATH topology
 3I3U A;  1YS0 A;  2EG3 A;  2ORA A;  3ICT A;  1E0C A;  5HPA A;  1H4K X;  5LAM A;  1BOI A;  1WHB A;  1YT8 A;  1BOH A;  3ILM A;  2IFD A;  2JTS A;  3OLH A;  3ICS A;  3G5J A;  1CWR A;  1T3K A;  2DCQ A;  2FSX A;  3P3A A;  4WH9 A;  2WLX A;  2IFV A;  2K0Z A;  3HWI A;  3NHV A;  3OP3 A;  3HZU A;  2JTR A;  1TQ1 A;  2OUC A;  3NTA A;  2A2K A;  5HBP A;  3IPP A;  3O3W A;  1CWT A;  3R2U A;  1WV9 A;  2GWF A;  1RHD A;  1CWS A;  1VEE A;  1RHS A;  3TG1 B;  1OKG A;  4WH7 A;  5HBO A;  3FS5 A;  1YM9 A;  3AAX A;  2MOI A;  2VSW A;  5HBQ A;  1H4M X;  1C25 A;  2WLR A;  2KL3 A;  1URH A;  4JGT A;  2JTQ A;  1YMK A;  2EG4 A;  2UZQ A;  2Q82 A;  3MZZ A;  3UTN X;  3TG3 A;  2J6P A;  3IPO A;  1HZM A;  1QB0 A;  1QXN A;  3D1P A;  3GK5 A;  3NT6 A;  3HIX A;  3FNJ A;  3FLH A;  1YML A;  1GMX A;  3NTD A;  2MRM A;  1GN0 A;  3ICR A;  4F67 A;  2MOL A;  2EG4 B;  1YMD A;  3K9R A;  3AAY A;  3TP9 A;  1DP2 A;  3F4A A;  1ORB A;  3I2V A;  4OCG A;  1UAR A;  3IWH A;  5HBL A;  3FOJ A;  2HHG A;  5LAO A; 
#chains in the Genus database with same CATH homology
 3I3U A;  1YS0 A;  2EG3 A;  2ORA A;  3ICT A;  1E0C A;  5HPA A;  1H4K X;  5LAM A;  1BOI A;  1WHB A;  1YT8 A;  1BOH A;  3ILM A;  2IFD A;  2JTS A;  3OLH A;  3ICS A;  3G5J A;  1CWR A;  1T3K A;  2DCQ A;  2FSX A;  3P3A A;  4WH9 A;  2WLX A;  2IFV A;  2K0Z A;  3HWI A;  3NHV A;  3OP3 A;  3HZU A;  2JTR A;  1TQ1 A;  2OUC A;  3NTA A;  2A2K A;  5HBP A;  3IPP A;  3O3W A;  1CWT A;  3R2U A;  1WV9 A;  2GWF A;  1RHD A;  1CWS A;  1VEE A;  1RHS A;  3TG1 B;  1OKG A;  4WH7 A;  5HBO A;  3FS5 A;  1YM9 A;  3AAX A;  2MOI A;  2VSW A;  5HBQ A;  1H4M X;  1C25 A;  2WLR A;  2KL3 A;  1URH A;  4JGT A;  2JTQ A;  1YMK A;  2EG4 A;  2UZQ A;  3MZZ A;  3UTN X;  3TG3 A;  2J6P A;  3IPO A;  1HZM A;  1QB0 A;  1QXN A;  3D1P A;  3GK5 A;  3NT6 A;  3HIX A;  3FNJ A;  3FLH A;  1YML A;  1GMX A;  3NTD A;  2MRM A;  1GN0 A;  3ICR A;  4F67 A;  2MOL A;  2EG4 B;  1YMD A;  3K9R A;  3AAY A;  3TP9 A;  1DP2 A;  3F4A A;  1ORB A;  3I2V A;  4OCG A;  1UAR A;  3IWH A;  5HBL A;  3FOJ A;  2HHG A;  5LAO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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