2CZO | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	130
structure length	130
Chain Sequence	KSAKLVDGELLVKASVESFGLEDEKYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYVTNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Signaling protein
source organism	Saccharomyces cerevisiae
publication title	Solution structure of the PX domain of Bem1p rcsb
molecule keywords	Bud emergence protein 1
total genus	18
structure length	130
sequence length	130
ec nomenclature
pdb deposition date	2005-07-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	2czoA00

2ETTA 4HASA 4AKVA 3FOGA 2YPSA 4IKBB 1O7KA 2I4KA 2CSKA 3HPCX 3LUIA 3P0CA 2RAIA 4P2IA 3HPBA 1OCUA 1KQ6A 4PQPA 2WWEA 3IQ2A 2V14A 1XTEA 2L73A 4OXWA 1GD5A 4PQOA 4ON3A 4AZ9A 1XTNA 2RAJA 1H6HA 1OCSA 1KMDA 4PZGA 4IKDA 2DYBA 2RAKA 4BGJA 2AR5A 3DYTA 4IKBA 2IWLX 2REAA 2V6VA 2REDA 2CZOA 4P2JA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2ETT A;  4HAS A;  4AKV A;  3FOG A;  2YPS A;  4IKB B;  1O7K A;  2I4K A;  2CSK A;  3HPC X;  3LUI A;  3P0C A;  2RAI A;  4P2I A;  3HPB A;  1OCU A;  1KQ6 A;  4PQP A;  2WWE A;  3IQ2 A;  2V14 A;  1XTE A;  2L73 A;  4OXW A;  1GD5 A;  4PQO A;  4ON3 A;  4AZ9 A;  1XTN A;  2RAJ A;  1H6H A;  1OCS A;  1KMD A;  4PZG A;  4IKD A;  2DYB A;  2RAK A;  4BGJ A;  2AR5 A;  3DYT A;  4IKB A;  2IWL X;  2REA A;  2V6V A;  2RED A;  2CZO A;  4P2J A; 
#chains in the Genus database with same CATH topology
 2ETT A;  4HAS A;  4AKV A;  3FOG A;  2YPS A;  4IKB B;  1O7K A;  2I4K A;  2CSK A;  3HPC X;  3LUI A;  3P0C A;  2RAI A;  4P2I A;  3HPB A;  1OCU A;  1KQ6 A;  4PQP A;  2WWE A;  3IQ2 A;  2V14 A;  1XTE A;  2L73 A;  4OXW A;  1GD5 A;  4PQO A;  4ON3 A;  4AZ9 A;  1XTN A;  2RAJ A;  1H6H A;  1OCS A;  1KMD A;  4PZG A;  4IKD A;  2DYB A;  2RAK A;  4BGJ A;  2AR5 A;  3DYT A;  4IKB A;  2IWL X;  2REA A;  2V6V A;  2RED A;  2CZO A;  4P2J A; 
#chains in the Genus database with same CATH homology
 2ETT A;  4HAS A;  4AKV A;  3FOG A;  2YPS A;  4IKB B;  1O7K A;  2I4K A;  2CSK A;  3HPC X;  3LUI A;  3P0C A;  2RAI A;  4P2I A;  3HPB A;  1OCU A;  1KQ6 A;  4PQP A;  2WWE A;  3IQ2 A;  2V14 A;  1XTE A;  2L73 A;  4OXW A;  1GD5 A;  4PQO A;  4ON3 A;  4AZ9 A;  1XTN A;  2RAJ A;  1H6H A;  1OCS A;  1KMD A;  4PZG A;  4IKD A;  2DYB A;  2RAK A;  4BGJ A;  2AR5 A;  3DYT A;  4IKB A;  2IWL X;  2REA A;  2V6V A;  2RED A;  2CZO A;  4P2J A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2CZOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations