2E32 | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	153
structure length	130
Chain Sequence	PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDDPVPLPNVNAAILKKVIQWCTHHKDDDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 130 atoms

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130 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ligase
source organism	Mus musculus
publication title	Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase pubmed doi rcsb
molecule keywords	F-box only protein 2
total genus	36
structure length	130
sequence length	153
chains with identical sequence	D
ec nomenclature
pdb deposition date	2006-11-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01466	Skp1	Skp1 family, dimerisation domain
B	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	2e32B00

3M52A 4W9HH 4BGCA 3LUTB 1FQVB 4J8ZA 3C6NA 2P1QA 3BIMA 4B9KB 1DSXA 1LM8C 1R28A 4W9EB 4W9CB 4UYIA 4W9GB 2Q81A 3V7DA 4W9KB 1R29A 4N9F5 1P22B 4CXJA 3ZTCB 2C9WC 3LBZA 4U77A 3ZTDB 4CXTA 2VKPA 2PPIA 4UIJA 4WQOC 3HTMA 2JZ3C 1R2BA 1BUOA 4B9KE 2NN2A 3OGMA 3M8VA 5LLIB 4W9FB 2E32B 4U2NA 4U2MA 2MA9C 4W9DB 3WSOB 2P1MA 2OVRA 4JTAB 4APFA 3HQIA 2E31B 5FTAA 5BO4C 2ASTA 2IZVC 4CP3A 3ZNGB 4I6JC 3M4TA 4AJYC 1FS2B 1EOFA 1HV2A 5JH5B 4CXIA 1EODA 3I3NA 3B84A 3E4UA 3C6OA 3ZRFB 3DRZA 1NN7A 2OVQA 1CS3A 2NZ0B 2IF5A 2I2RA 3HVEB 4ZOUA 2IHCA 4AWJB 3ZRCB 2FNJC 2P1OA 5BXHA 1EOEA 2YY9A 1EXBE 2R9RB 1FS1B 2P1NA 4EOZA 3OGLA 3ZUNB 3M5BA 3HU6A 3L2OA 1QDWA 3LNMB 4W9LB 5DAFA 2VPKA 4B95B 4JTDB 1QDVA 5DADA 5BXDA 3OHUA 1LDKD 2A79B 3MKSA 5EUPA 5H7HA 5IBKA 2OVPA 2P1PA 1T1DA 1VCBB 5A15A 3ZKJB 4W9JB 1LQBB 2Z8HA 4BKTB 3C6PA 5BXBA 4AP2A 4W9IB 5HZGC 4CRHA 3FKCA 3GA1A 1NEXA 4BKSB 4HXIA 4JGHC 1S1GA 5A6RA 3DCGB 3OHVA 5HYWB 1A68A 4W9HB 3OGKA 4JTCB 5H7GA 2ASSA 3KVTA 3HVEA
chains in the Genus database with same CATH superfamily

3M52A 4W9HH 4BGCA 3LUTB 1FQVB 4J8ZA 3C6NA 2P1QA 3BIMA 4B9KB 1DSXA 1LM8C 1R28A 4W9EB 4W9CB 4UYIA 4W9GB 2Q81A 3V7DA 4W9KB 1R29A 4N9F5 1P22B 4CXJA 3ZTCB 2C9WC 3LBZA 4U77A 3ZTDB 4CXTA 2VKPA 2PPIA 4UIJA 4WQOC 3HTMA 2JZ3C 1R2BA 1BUOA 4B9KE 2NN2A 3OGMA 3M8VA 5LLIB 4W9FB 2E32B 4U2NA 4U2MA 2MA9C 4W9DB 3WSOB 2P1MA 2OVRA 4JTAB 4APFA 3HQIA 2E31B 5FTAA 5BO4C 3DRYA 2ASTA 2IZVC 4CP3A 3ZNGB 4I6JC 3M4TA 4AJYC 1FS2B 1EOFA 1HV2A 5JH5B 4CXIA 4ZGCA 1EODA 3I3NA 3B84A 3E4UA 3C6OA 3ZRFB 3DRZA 1NN7A 2OVQA 1CS3A 2NZ0B 2IF5A 2I2RA 3HVEB 4ZOUA 2IHCA 4AWJB 3ZRCB 2FNJC 2P1OA 5BXHA 1EOEA 2YY9A 1EXBE 2R9RB 1FS1B 2P1NA 4EOZA 3OGLA 3ZUNB 3M5BA 3HU6A 3L2OA 1QDWA 3LNMB 4W9LB 5DAFA 2VPKA 4B95B 3DRXA 4JTDB 1QDVA 5DADA 5BXDA 3OHUA 1LDKD 2A79B 3MKSA 5EUPA 5H7HA 5IBKA 2OVPA 2P1PA 1T1DA 4YY8A 1VCBB 5A15A 3ZKJB 4W9JB 1LQBB 2Z8HA 4BKTB 3C6PA 5BXBA 4AP2A 4W9IB 5HZGC 4CRHA 3FKCA 3GA1A 1NEXA 4BKSB 4HXIA 4JGHC 1S1GA 5A6RA 3DCGB 3OHVA 5HYWB 1A68A 4W9HB 3OGKA 4JTCB 5H7GA 2ASSA 3KVTA 3HVEA
chains in the Genus database with same CATH topology

3M52A 4W9HH 4BGCA 3LUTB 1FQVB 4J8ZA 3C6NA 2P1QA 3BIMA 4B9KB 1DSXA 1LM8C 1R28A 4W9EB 4W9CB 4UYIA 4W9GB 2Q81A 3V7DA 4W9KB 1R29A 4N9F5 1P22B 4CXJA 3ZTCB 2C9WC 3LBZA 4U77A 3ZTDB 4CXTA 2VKPA 2PPIA 4UIJA 4WQOC 3HTMA 2JZ3C 1R2BA 1BUOA 4B9KE 2NN2A 3OGMA 3M8VA 5LLIB 4W9FB 2E32B 4U2NA 4U2MA 2MA9C 4W9DB 3WSOB 2P1MA 2OVRA 4JTAB 4APFA 3HQIA 2E31B 5FTAA 5BO4C 3DRYA 2ASTA 2IZVC 4CP3A 3ZNGB 4I6JC 3M4TA 4AJYC 1FS2B 1EOFA 1HV2A 5JH5B 4CXIA 4ZGCA 1EODA 3I3NA 3B84A 3E4UA 3C6OA 3ZRFB 3DRZA 1NN7A 2OVQA 1CS3A 2NZ0B 2IF5A 2I2RA 3HVEB 4ZOUA 2IHCA 4AWJB 3ZRCB 2FNJC 2P1OA 5BXHA 1EOEA 2YY9A 1EXBE 2R9RB 1FS1B 2P1NA 4EOZA 3OGLA 3ZUNB 3M5BA 3HU6A 3L2OA 1QDWA 3LNMB 4W9LB 5DAFA 2VPKA 4B95B 3DRXA 4JTDB 1QDVA 5DADA 5BXDA 3OHUA 1LDKD 2A79B 3MKSA 5EUPA 5H7HA 5IBKA 2OVPA 2P1PA 1T1DA 4YY8A 1VCBB 5A15A 3ZKJB 4W9JB 1LQBB 2Z8HA 4BKTB 3C6PA 5BXBA 4AP2A 4W9IB 5HZGC 4CRHA 3FKCA 3GA1A 1NEXA 4BKSB 4HXIA 4JGHC 1S1GA 5A6RA 3DCGB 3OHVA 5HYWB 1A68A 4W9HB 3OGKA 4JTCB 5H7GA 2ASSA 3KVTA 3HVEA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3M52 A;  4W9H H;  4BGC A;  3LUT B;  1FQV B;  4J8Z A;  3C6N A;  2P1Q A;  3BIM A;  4B9K B;  1DSX A;  1LM8 C;  1R28 A;  4W9E B;  4W9C B;  4UYI A;  4W9G B;  2Q81 A;  3V7D A;  4W9K B;  1R29 A;  4N9F 5;  1P22 B;  4CXJ A;  3ZTC B;  2C9W C;  3LBZ A;  4U77 A;  3ZTD B;  4CXT A;  2VKP A;  2PPI A;  4UIJ A;  4WQO C;  3HTM A;  2JZ3 C;  1R2B A;  1BUO A;  4B9K E;  2NN2 A;  3OGM A;  3M8V A;  5LLI B;  4W9F B;  2E32 B;  4U2N A;  4U2M A;  2MA9 C;  4W9D B;  3WSO B;  2P1M A;  2OVR A;  4JTA B;  4APF A;  3HQI A;  2E31 B;  5FTA A;  5BO4 C;  2AST A;  2IZV C;  4CP3 A;  3ZNG B;  4I6J C;  3M4T A;  4AJY C;  1FS2 B;  1EOF A;  1HV2 A;  5JH5 B;  4CXI A;  1EOD A;  3I3N A;  3B84 A;  3E4U A;  3C6O A;  3ZRF B;  3DRZ A;  1NN7 A;  2OVQ A;  1CS3 A;  2NZ0 B;  2IF5 A;  2I2R A;  3HVE B;  4ZOU A;  2IHC A;  4AWJ B;  3ZRC B;  2FNJ C;  2P1O A;  5BXH A;  1EOE A;  2YY9 A;  1EXB E;  2R9R B;  1FS1 B;  2P1N A;  4EOZ A;  3OGL A;  3ZUN B;  3M5B A;  3HU6 A;  3L2O A;  1QDW A;  3LNM B;  4W9L B;  5DAF A;  2VPK A;  4B95 B;  4JTD B;  1QDV A;  5DAD A;  5BXD A;  3OHU A;  1LDK D;  2A79 B;  3MKS A;  5EUP A;  5H7H A;  5IBK A;  2OVP A;  2P1P A;  1T1D A;  1VCB B;  5A15 A;  3ZKJ B;  4W9J B;  1LQB B;  2Z8H A;  4BKT B;  3C6P A;  5BXB A;  4AP2 A;  4W9I B;  5HZG C;  4CRH A;  3FKC A;  3GA1 A;  1NEX A;  4BKS B;  4HXI A;  4JGH C;  1S1G A;  5A6R A;  3DCG B;  3OHV A;  5HYW B;  1A68 A;  4W9H B;  3OGK A;  4JTC B;  5H7G A;  2ASS A;  3KVT A;  3HVE A; 
#chains in the Genus database with same CATH topology
 3M52 A;  4W9H H;  4BGC A;  3LUT B;  1FQV B;  4J8Z A;  3C6N A;  2P1Q A;  3BIM A;  4B9K B;  1DSX A;  1LM8 C;  1R28 A;  4W9E B;  4W9C B;  4UYI A;  4W9G B;  2Q81 A;  3V7D A;  4W9K B;  1R29 A;  4N9F 5;  1P22 B;  4CXJ A;  3ZTC B;  2C9W C;  3LBZ A;  4U77 A;  3ZTD B;  4CXT A;  2VKP A;  2PPI A;  4UIJ A;  4WQO C;  3HTM A;  2JZ3 C;  1R2B A;  1BUO A;  4B9K E;  2NN2 A;  3OGM A;  3M8V A;  5LLI B;  4W9F B;  2E32 B;  4U2N A;  4U2M A;  2MA9 C;  4W9D B;  3WSO B;  2P1M A;  2OVR A;  4JTA B;  4APF A;  3HQI A;  2E31 B;  5FTA A;  5BO4 C;  3DRY A;  2AST A;  2IZV C;  4CP3 A;  3ZNG B;  4I6J C;  3M4T A;  4AJY C;  1FS2 B;  1EOF A;  1HV2 A;  5JH5 B;  4CXI A;  4ZGC A;  1EOD A;  3I3N A;  3B84 A;  3E4U A;  3C6O A;  3ZRF B;  3DRZ A;  1NN7 A;  2OVQ A;  1CS3 A;  2NZ0 B;  2IF5 A;  2I2R A;  3HVE B;  4ZOU A;  2IHC A;  4AWJ B;  3ZRC B;  2FNJ C;  2P1O A;  5BXH A;  1EOE A;  2YY9 A;  1EXB E;  2R9R B;  1FS1 B;  2P1N A;  4EOZ A;  3OGL A;  3ZUN B;  3M5B A;  3HU6 A;  3L2O A;  1QDW A;  3LNM B;  4W9L B;  5DAF A;  2VPK A;  4B95 B;  3DRX A;  4JTD B;  1QDV A;  5DAD A;  5BXD A;  3OHU A;  1LDK D;  2A79 B;  3MKS A;  5EUP A;  5H7H A;  5IBK A;  2OVP A;  2P1P A;  1T1D A;  4YY8 A;  1VCB B;  5A15 A;  3ZKJ B;  4W9J B;  1LQB B;  2Z8H A;  4BKT B;  3C6P A;  5BXB A;  4AP2 A;  4W9I B;  5HZG C;  4CRH A;  3FKC A;  3GA1 A;  1NEX A;  4BKS B;  4HXI A;  4JGH C;  1S1G A;  5A6R A;  3DCG B;  3OHV A;  5HYW B;  1A68 A;  4W9H B;  3OGK A;  4JTC B;  5H7G A;  2ASS A;  3KVT A;  3HVE A; 
#chains in the Genus database with same CATH homology
 3M52 A;  4W9H H;  4BGC A;  3LUT B;  1FQV B;  4J8Z A;  3C6N A;  2P1Q A;  3BIM A;  4B9K B;  1DSX A;  1LM8 C;  1R28 A;  4W9E B;  4W9C B;  4UYI A;  4W9G B;  2Q81 A;  3V7D A;  4W9K B;  1R29 A;  4N9F 5;  1P22 B;  4CXJ A;  3ZTC B;  2C9W C;  3LBZ A;  4U77 A;  3ZTD B;  4CXT A;  2VKP A;  2PPI A;  4UIJ A;  4WQO C;  3HTM A;  2JZ3 C;  1R2B A;  1BUO A;  4B9K E;  2NN2 A;  3OGM A;  3M8V A;  5LLI B;  4W9F B;  2E32 B;  4U2N A;  4U2M A;  2MA9 C;  4W9D B;  3WSO B;  2P1M A;  2OVR A;  4JTA B;  4APF A;  3HQI A;  2E31 B;  5FTA A;  5BO4 C;  3DRY A;  2AST A;  2IZV C;  4CP3 A;  3ZNG B;  4I6J C;  3M4T A;  4AJY C;  1FS2 B;  1EOF A;  1HV2 A;  5JH5 B;  4CXI A;  4ZGC A;  1EOD A;  3I3N A;  3B84 A;  3E4U A;  3C6O A;  3ZRF B;  3DRZ A;  1NN7 A;  2OVQ A;  1CS3 A;  2NZ0 B;  2IF5 A;  2I2R A;  3HVE B;  4ZOU A;  2IHC A;  4AWJ B;  3ZRC B;  2FNJ C;  2P1O A;  5BXH A;  1EOE A;  2YY9 A;  1EXB E;  2R9R B;  1FS1 B;  2P1N A;  4EOZ A;  3OGL A;  3ZUN B;  3M5B A;  3HU6 A;  3L2O A;  1QDW A;  3LNM B;  4W9L B;  5DAF A;  2VPK A;  4B95 B;  3DRX A;  4JTD B;  1QDV A;  5DAD A;  5BXD A;  3OHU A;  1LDK D;  2A79 B;  3MKS A;  5EUP A;  5H7H A;  5IBK A;  2OVP A;  2P1P A;  1T1D A;  4YY8 A;  1VCB B;  5A15 A;  3ZKJ B;  4W9J B;  1LQB B;  2Z8H A;  4BKT B;  3C6P A;  5BXB A;  4AP2 A;  4W9I B;  5HZG C;  4CRH A;  3FKC A;  3GA1 A;  1NEX A;  4BKS B;  4HXI A;  4JGH C;  1S1G A;  5A6R A;  3DCG B;  3OHV A;  5HYW B;  1A68 A;  4W9H B;  3OGK A;  4JTC B;  5H7G A;  2ASS A;  3KVT A;  3HVE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2E32B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations