2ETT | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	128
structure length	128
Chain Sequence	GHHHHHHLELEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLRHFPTDPKASNWG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 128 atoms

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128 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Solution structure of human sorting nexin 22. pubmed doi rcsb
molecule keywords	Sorting nexin-22
total genus	27
structure length	128
sequence length	128
ec nomenclature
pdb deposition date	2005-10-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	2ettA00

2RAIA 2RAKA 4BGJA 1H6HA 2REDA 2WWEA 4PQOA 4AKVA 3P0CA 1GD5A 4IKBA 2CZOA 3LUIA 4HASA 4PQPA 4IKDA 3FOGA 2REAA 3HPCX 2DYBA 1KMDA 2AR5A 2YPSA 1XTEA 2CSKA 4AZ9A 2V14A 2L73A 1XTNA 1O7KA 4P2JA 4PZGA 4P2IA 2RAJA 2I4KA 4OXWA 1KQ6A 4ON3A 2V6VA 1OCSA 3HPBA 2ETTA 3IQ2A 3DYTA 4IKBB 1OCUA 2IWLX
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2RAI A;  2RAK A;  4BGJ A;  1H6H A;  2RED A;  2WWE A;  4PQO A;  4AKV A;  3P0C A;  1GD5 A;  4IKB A;  2CZO A;  3LUI A;  4HAS A;  4PQP A;  4IKD A;  3FOG A;  2REA A;  3HPC X;  2DYB A;  1KMD A;  2AR5 A;  2YPS A;  1XTE A;  2CSK A;  4AZ9 A;  2V14 A;  2L73 A;  1XTN A;  1O7K A;  4P2J A;  4PZG A;  4P2I A;  2RAJ A;  2I4K A;  4OXW A;  1KQ6 A;  4ON3 A;  2V6V A;  1OCS A;  3HPB A;  2ETT A;  3IQ2 A;  3DYT A;  4IKB B;  1OCU A;  2IWL X; 
#chains in the Genus database with same CATH topology
 2RAI A;  2RAK A;  4BGJ A;  1H6H A;  2RED A;  2WWE A;  4PQO A;  4AKV A;  3P0C A;  1GD5 A;  4IKB A;  2CZO A;  3LUI A;  4HAS A;  4PQP A;  4IKD A;  3FOG A;  2REA A;  3HPC X;  2DYB A;  1KMD A;  2AR5 A;  2YPS A;  1XTE A;  2CSK A;  4AZ9 A;  2V14 A;  2L73 A;  1XTN A;  1O7K A;  4P2J A;  4PZG A;  4P2I A;  2RAJ A;  2I4K A;  4OXW A;  1KQ6 A;  4ON3 A;  2V6V A;  1OCS A;  3HPB A;  2ETT A;  3IQ2 A;  3DYT A;  4IKB B;  1OCU A;  2IWL X; 
#chains in the Genus database with same CATH homology
 2RAI A;  2RAK A;  4BGJ A;  1H6H A;  2RED A;  2WWE A;  4PQO A;  4AKV A;  3P0C A;  1GD5 A;  4IKB A;  2CZO A;  3LUI A;  4HAS A;  4PQP A;  4IKD A;  3FOG A;  2REA A;  3HPC X;  2DYB A;  1KMD A;  2AR5 A;  2YPS A;  1XTE A;  2CSK A;  4AZ9 A;  2V14 A;  2L73 A;  1XTN A;  1O7K A;  4P2J A;  4PZG A;  4P2I A;  2RAJ A;  2I4K A;  4OXW A;  1KQ6 A;  4ON3 A;  2V6V A;  1OCS A;  3HPB A;  2ETT A;  3IQ2 A;  3DYT A;  4IKB B;  1OCU A;  2IWL X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2ETTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations