2FNJC

Crystal structure of a b30.2/spry domain-containing protein gustavus in complex with elongin b and elongin c
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
96
structure length
88
Chain Sequence
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII1 (37-40)S1 (18-22)TI1 (23-26)AH3 (67-85)S2 (28-32)AH2 (40-47)TI2 (62-65)AH1 (33-37)S3 (59-61)Updating...
connected with : NaN
molecule tags Protein transport/signaling protein
source organism Drosophila melanogaster
publication title Structural and functional insights into the B30.2/SPRY domain
pubmed doi rcsb
molecule keywords CG2944-PF, isoform F
total genus 28
structure length 88
sequence length 96
ec nomenclature
pdb deposition date 2006-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2fnjC00
3HVEA 3HVEB 2ASTA 3DCGB 1R2BA 1CS3A 4BKTB 3GA1A 4JGHC 3MKSA 3HTMA 1NEXA 2I2RA 5IBKA 3V7DA 4UIJA 4EOZA 1R29A 3B84A 3DRZA 3L2OA 4W9FB 1NN7A 4CXTA 1BUOA 2OVQA 5BXDA 4AP2A 4BGCA 1QDWA 2Z8HA 2P1NA 2JZ3C 4CRHA 4W9KB 3ZNGB 4U77A 1R28A 4U2NA 4W9HB 2E32B 3I3NA 1S1GA 2P1QA 5EUPA 3WSOB 1FS1B 4CXJA 1QDVA 4W9LB 3LUTB 3OGLA 2IHCA 2ASSA 2IZVC 3ZTCB 4W9CB 4J8ZA 1DSXA 4JTDB 3OGKA 4W9HH 1P22B 4AWJB 2NN2A 1LM8C 5BXHA 2C9WC 4JTAB 5H7HA 2IF5A 2A79B 4CXIA 2OVPA 2FNJC 1HV2A 1FS2B 2VPKA 3OGMA 3HQIA 1EOFA 3LNMB 4ZOUA 1T1DA 2P1OA 2P1PA 3M8VA 2E31B 3C6OA 5FTAA 1VCBB 2MA9C 5JH5B 4W9GB 4APFA 3LBZA 3M4TA 2Q81A 1EODA 3HU6A 5HZGC 4WQOC 4JTCB 1EOEA 1EXBE 1A68A 3BIMA 4CP3A 5A6RA 4I6JC 2OVRA 3ZUNB 3E4UA 5BO4C 5DAFA 5HYWB 2P1MA 2VKPA 4B9KE 1LQBB 2R9RB 3OHVA 3KVTA 4HXIA 4AJYC 5LLIB 4W9DB 3OHUA 4W9EB 4UYIA 5DADA 4W9JB 5A15A 3ZRCB 4B95B 5BXBA 2NZ0B 5H7GA 3ZKJB 4U2MA 3ZTDB 3ZRFB 3M52A 1FQVB 3C6PA 4B9KB 3FKCA 4N9F5 3M5BA 4BKSB 2YY9A 1LDKD 2PPIA 3C6NA 4W9IB
chains in the Genus database with same CATH superfamily
3HVEA 3HVEB 2ASTA 3DCGB 1R2BA 1CS3A 4BKTB 3GA1A 4JGHC 3MKSA 3HTMA 1NEXA 2I2RA 5IBKA 3DRXA 4UIJA 3V7DA 4EOZA 1R29A 3B84A 3DRZA 3L2OA 4W9FB 1NN7A 4CXTA 1BUOA 2OVQA 5BXDA 4AP2A 4BGCA 1QDWA 2Z8HA 2P1NA 2JZ3C 4CRHA 4W9KB 3ZNGB 4U77A 1R28A 4U2NA 4W9HB 2E32B 3I3NA 1S1GA 2P1QA 5EUPA 3WSOB 1FS1B 4CXJA 1QDVA 4W9LB 3LUTB 3OGLA 2IHCA 2ASSA 2IZVC 3ZTCB 4W9CB 4J8ZA 1DSXA 4JTDB 3OGKA 4W9HH 1P22B 4AWJB 2NN2A 1LM8C 5BXHA 2C9WC 4JTAB 5H7HA 2IF5A 2A79B 4CXIA 2OVPA 2FNJC 1HV2A 1FS2B 2VPKA 3OGMA 3HQIA 1EOFA 3LNMB 4ZOUA 1T1DA 2P1OA 2P1PA 3M8VA 4YY8A 2E31B 3C6OA 3DRYA 5FTAA 1VCBB 2MA9C 5JH5B 4W9GB 4APFA 3LBZA 3M4TA 2Q81A 1EODA 3HU6A 5HZGC 4WQOC 4JTCB 1EOEA 1EXBE 1A68A 3BIMA 4CP3A 5A6RA 4I6JC 2OVRA 3ZUNB 3E4UA 5BO4C 5DAFA 5HYWB 2P1MA 2VKPA 4B9KE 1LQBB 2R9RB 3OHVA 3KVTA 4HXIA 4AJYC 5LLIB 4W9DB 3OHUA 4W9EB 4UYIA 5DADA 4W9JB 5A15A 3ZRCB 4B95B 5BXBA 2NZ0B 5H7GA 3ZKJB 4ZGCA 4U2MA 3ZTDB 3ZRFB 3M52A 1FQVB 3C6PA 4B9KB 3FKCA 4N9F5 3M5BA 4BKSB 2YY9A 1LDKD 2PPIA 3C6NA 4W9IB
chains in the Genus database with same CATH topology
3HVEA 3HVEB 2ASTA 3DCGB 1R2BA 1CS3A 4BKTB 3GA1A 4JGHC 3MKSA 3HTMA 1NEXA 2I2RA 5IBKA 3DRXA 4UIJA 3V7DA 4EOZA 1R29A 3B84A 3DRZA 3L2OA 4W9FB 1NN7A 4CXTA 1BUOA 2OVQA 5BXDA 4AP2A 4BGCA 1QDWA 2Z8HA 2P1NA 2JZ3C 4CRHA 4W9KB 3ZNGB 4U77A 1R28A 4U2NA 4W9HB 2E32B 3I3NA 1S1GA 2P1QA 5EUPA 3WSOB 1FS1B 4CXJA 1QDVA 4W9LB 3LUTB 3OGLA 2IHCA 2ASSA 2IZVC 3ZTCB 4W9CB 4J8ZA 1DSXA 4JTDB 3OGKA 4W9HH 1P22B 4AWJB 2NN2A 1LM8C 5BXHA 2C9WC 4JTAB 5H7HA 2IF5A 2A79B 4CXIA 2OVPA 2FNJC 1HV2A 1FS2B 2VPKA 3OGMA 3HQIA 1EOFA 3LNMB 4ZOUA 1T1DA 2P1OA 2P1PA 3M8VA 4YY8A 2E31B 3C6OA 3DRYA 5FTAA 1VCBB 2MA9C 5JH5B 4W9GB 4APFA 3LBZA 3M4TA 2Q81A 1EODA 3HU6A 5HZGC 4WQOC 4JTCB 1EOEA 1EXBE 1A68A 3BIMA 4CP3A 5A6RA 4I6JC 2OVRA 3ZUNB 3E4UA 5BO4C 5DAFA 5HYWB 2P1MA 2VKPA 4B9KE 1LQBB 2R9RB 3OHVA 3KVTA 4HXIA 4AJYC 5LLIB 4W9DB 3OHUA 4W9EB 4UYIA 5DADA 4W9JB 5A15A 3ZRCB 4B95B 5BXBA 2NZ0B 5H7GA 3ZKJB 4ZGCA 4U2MA 3ZTDB 3ZRFB 3M52A 1FQVB 3C6PA 4B9KB 3FKCA 4N9F5 3M5BA 4BKSB 2YY9A 1LDKD 2PPIA 3C6NA 4W9IB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HVE A;  3HVE B;  2AST A;  3DCG B;  1R2B A;  1CS3 A;  4BKT B;  3GA1 A;  4JGH C;  3MKS A;  3HTM A;  1NEX A;  2I2R A;  5IBK A;  3V7D A;  4UIJ A;  4EOZ A;  1R29 A;  3B84 A;  3DRZ A;  3L2O A;  4W9F B;  1NN7 A;  4CXT A;  1BUO A;  2OVQ A;  5BXD A;  4AP2 A;  4BGC A;  1QDW A;  2Z8H A;  2P1N A;  2JZ3 C;  4CRH A;  4W9K B;  3ZNG B;  4U77 A;  1R28 A;  4U2N A;  4W9H B;  2E32 B;  3I3N A;  1S1G A;  2P1Q A;  5EUP A;  3WSO B;  1FS1 B;  4CXJ A;  1QDV A;  4W9L B;  3LUT B;  3OGL A;  2IHC A;  2ASS A;  2IZV C;  3ZTC B;  4W9C B;  4J8Z A;  1DSX A;  4JTD B;  3OGK A;  4W9H H;  1P22 B;  4AWJ B;  2NN2 A;  1LM8 C;  5BXH A;  2C9W C;  4JTA B;  5H7H A;  2IF5 A;  2A79 B;  4CXI A;  2OVP A;  2FNJ C;  1HV2 A;  1FS2 B;  2VPK A;  3OGM A;  3HQI A;  1EOF A;  3LNM B;  4ZOU A;  1T1D A;  2P1O A;  2P1P A;  3M8V A;  2E31 B;  3C6O A;  5FTA A;  1VCB B;  2MA9 C;  5JH5 B;  4W9G B;  4APF A;  3LBZ A;  3M4T A;  2Q81 A;  1EOD A;  3HU6 A;  5HZG C;  4WQO C;  4JTC B;  1EOE A;  1EXB E;  1A68 A;  3BIM A;  4CP3 A;  5A6R A;  4I6J C;  2OVR A;  3ZUN B;  3E4U A;  5BO4 C;  5DAF A;  5HYW B;  2P1M A;  2VKP A;  4B9K E;  1LQB B;  2R9R B;  3OHV A;  3KVT A;  4HXI A;  4AJY C;  5LLI B;  4W9D B;  3OHU A;  4W9E B;  4UYI A;  5DAD A;  4W9J B;  5A15 A;  3ZRC B;  4B95 B;  5BXB A;  2NZ0 B;  5H7G A;  3ZKJ B;  4U2M A;  3ZTD B;  3ZRF B;  3M52 A;  1FQV B;  3C6P A;  4B9K B;  3FKC A;  4N9F 5;  3M5B A;  4BKS B;  2YY9 A;  1LDK D;  2PPI A;  3C6N A;  4W9I B; 
#chains in the Genus database with same CATH topology
 3HVE A;  3HVE B;  2AST A;  3DCG B;  1R2B A;  1CS3 A;  4BKT B;  3GA1 A;  4JGH C;  3MKS A;  3HTM A;  1NEX A;  2I2R A;  5IBK A;  3DRX A;  4UIJ A;  3V7D A;  4EOZ A;  1R29 A;  3B84 A;  3DRZ A;  3L2O A;  4W9F B;  1NN7 A;  4CXT A;  1BUO A;  2OVQ A;  5BXD A;  4AP2 A;  4BGC A;  1QDW A;  2Z8H A;  2P1N A;  2JZ3 C;  4CRH A;  4W9K B;  3ZNG B;  4U77 A;  1R28 A;  4U2N A;  4W9H B;  2E32 B;  3I3N A;  1S1G A;  2P1Q A;  5EUP A;  3WSO B;  1FS1 B;  4CXJ A;  1QDV A;  4W9L B;  3LUT B;  3OGL A;  2IHC A;  2ASS A;  2IZV C;  3ZTC B;  4W9C B;  4J8Z A;  1DSX A;  4JTD B;  3OGK A;  4W9H H;  1P22 B;  4AWJ B;  2NN2 A;  1LM8 C;  5BXH A;  2C9W C;  4JTA B;  5H7H A;  2IF5 A;  2A79 B;  4CXI A;  2OVP A;  2FNJ C;  1HV2 A;  1FS2 B;  2VPK A;  3OGM A;  3HQI A;  1EOF A;  3LNM B;  4ZOU A;  1T1D A;  2P1O A;  2P1P A;  3M8V A;  4YY8 A;  2E31 B;  3C6O A;  3DRY A;  5FTA A;  1VCB B;  2MA9 C;  5JH5 B;  4W9G B;  4APF A;  3LBZ A;  3M4T A;  2Q81 A;  1EOD A;  3HU6 A;  5HZG C;  4WQO C;  4JTC B;  1EOE A;  1EXB E;  1A68 A;  3BIM A;  4CP3 A;  5A6R A;  4I6J C;  2OVR A;  3ZUN B;  3E4U A;  5BO4 C;  5DAF A;  5HYW B;  2P1M A;  2VKP A;  4B9K E;  1LQB B;  2R9R B;  3OHV A;  3KVT A;  4HXI A;  4AJY C;  5LLI B;  4W9D B;  3OHU A;  4W9E B;  4UYI A;  5DAD A;  4W9J B;  5A15 A;  3ZRC B;  4B95 B;  5BXB A;  2NZ0 B;  5H7G A;  3ZKJ B;  4ZGC A;  4U2M A;  3ZTD B;  3ZRF B;  3M52 A;  1FQV B;  3C6P A;  4B9K B;  3FKC A;  4N9F 5;  3M5B A;  4BKS B;  2YY9 A;  1LDK D;  2PPI A;  3C6N A;  4W9I B; 
#chains in the Genus database with same CATH homology
 3HVE A;  3HVE B;  2AST A;  3DCG B;  1R2B A;  1CS3 A;  4BKT B;  3GA1 A;  4JGH C;  3MKS A;  3HTM A;  1NEX A;  2I2R A;  5IBK A;  3DRX A;  4UIJ A;  3V7D A;  4EOZ A;  1R29 A;  3B84 A;  3DRZ A;  3L2O A;  4W9F B;  1NN7 A;  4CXT A;  1BUO A;  2OVQ A;  5BXD A;  4AP2 A;  4BGC A;  1QDW A;  2Z8H A;  2P1N A;  2JZ3 C;  4CRH A;  4W9K B;  3ZNG B;  4U77 A;  1R28 A;  4U2N A;  4W9H B;  2E32 B;  3I3N A;  1S1G A;  2P1Q A;  5EUP A;  3WSO B;  1FS1 B;  4CXJ A;  1QDV A;  4W9L B;  3LUT B;  3OGL A;  2IHC A;  2ASS A;  2IZV C;  3ZTC B;  4W9C B;  4J8Z A;  1DSX A;  4JTD B;  3OGK A;  4W9H H;  1P22 B;  4AWJ B;  2NN2 A;  1LM8 C;  5BXH A;  2C9W C;  4JTA B;  5H7H A;  2IF5 A;  2A79 B;  4CXI A;  2OVP A;  2FNJ C;  1HV2 A;  1FS2 B;  2VPK A;  3OGM A;  3HQI A;  1EOF A;  3LNM B;  4ZOU A;  1T1D A;  2P1O A;  2P1P A;  3M8V A;  4YY8 A;  2E31 B;  3C6O A;  3DRY A;  5FTA A;  1VCB B;  2MA9 C;  5JH5 B;  4W9G B;  4APF A;  3LBZ A;  3M4T A;  2Q81 A;  1EOD A;  3HU6 A;  5HZG C;  4WQO C;  4JTC B;  1EOE A;  1EXB E;  1A68 A;  3BIM A;  4CP3 A;  5A6R A;  4I6J C;  2OVR A;  3ZUN B;  3E4U A;  5BO4 C;  5DAF A;  5HYW B;  2P1M A;  2VKP A;  4B9K E;  1LQB B;  2R9R B;  3OHV A;  3KVT A;  4HXI A;  4AJY C;  5LLI B;  4W9D B;  3OHU A;  4W9E B;  4UYI A;  5DAD A;  4W9J B;  5A15 A;  3ZRC B;  4B95 B;  5BXB A;  2NZ0 B;  5H7G A;  3ZKJ B;  4ZGC A;  4U2M A;  3ZTD B;  3ZRF B;  3M52 A;  1FQV B;  3C6P A;  4B9K B;  3FKC A;  4N9F 5;  3M5B A;  4BKS B;  2YY9 A;  1LDK D;  2PPI A;  3C6N A;  4W9I B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.