2FSXA

Crystal structure of rv0390 from m. tuberculosis
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
139
structure length
132
Chain Sequence
SYAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPRPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Rv0390 from Mycobacterium tuberculosis
rcsb
molecule tags Structural genomics, unknown function
source organism Mycobacterium tuberculosis
molecule keywords COG0607: Rhodanese-related sulfurtransferase
total genus 42
structure length 132
sequence length 139
ec nomenclature
pdb deposition date 2006-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2fsxA00
3FS5A 5HBQA 3ICTA 3OLHA 3D1PA 3FNJA 4WH7A 1CWTA 2EG4B 5LAOA 1H4MX 2GWFA 1BOIA 1YS0A 2FSXA 2MOLA 2OUCA 2A2KA 2EG4A 3G5JA 5HBPA 5HPAA 2KL3A 1WV9A 1RHSA 2JTRA 2MOIA 4JGTA 1CWRA 1GMXA 3I3UA 1YMKA 1QB0A 1YT8A 1T3KA 3AAYA 3I2VA 2K0ZA 2IFDA 2WLXA 1RHDA 1C25A 1HZMA 4F67A 2DCQA 4OCGA 1ORBA 1URHA 1CWSA 3NTDA 2JTQA 5LAMA 2EG3A 3AAXA 1UARA 3P3AA 3TP9A 3OP3A 3FLHA 5HBLA 5HBOA 2JTSA 3UTNX 1GN0A 3NT6A 3ICSA 1WHBA 3ICRA 3IPOA 2UZQA 3HZUA 2VSWA 3NHVA 3F4AA 1H4KX 3TG3A 1YM9A 3FOJA 4WH9A 1YMLA 3HWIA 3ILMA 3TG1B 1OKGA 3HIXA 3K9RA 1QXNA 1E0CA 1TQ1A 3NTAA 2HHGA 3IPPA 2IFVA 3IWHA 2J6PA 2WLRA 3GK5A 2ORAA 1DP2A 1YMDA 1BOHA 3R2UA 2MRMA 1VEEA 3MZZA 3O3WA
chains in the Genus database with same CATH superfamily
3FS5A 5HBQA 3ICTA 3OLHA 3D1PA 3FNJA 4WH7A 1CWTA 2EG4B 5LAOA 1H4MX 2GWFA 1BOIA 1YS0A 2FSXA 2MOLA 2OUCA 2A2KA 2EG4A 3G5JA 5HBPA 5HPAA 2KL3A 1WV9A 1RHSA 2JTRA 2Q82A 2MOIA 4JGTA 1CWRA 1GMXA 3I3UA 1YMKA 1QB0A 1YT8A 1T3KA 3AAYA 3I2VA 2K0ZA 2IFDA 2WLXA 1RHDA 1C25A 1HZMA 4F67A 2DCQA 4OCGA 1ORBA 1URHA 1CWSA 3NTDA 2JTQA 5LAMA 2EG3A 3AAXA 1UARA 3P3AA 3TP9A 3OP3A 3FLHA 5HBLA 5HBOA 2JTSA 3UTNX 1GN0A 3NT6A 3ICSA 1WHBA 3ICRA 3IPOA 2UZQA 3HZUA 2VSWA 3NHVA 3F4AA 1H4KX 3TG3A 1YM9A 3FOJA 4WH9A 1YMLA 3HWIA 3ILMA 3TG1B 1OKGA 3HIXA 3K9RA 1QXNA 1E0CA 1TQ1A 3NTAA 2HHGA 3IPPA 2IFVA 3IWHA 2J6PA 2WLRA 3GK5A 2ORAA 1DP2A 1YMDA 1BOHA 3R2UA 2MRMA 1VEEA 3MZZA 3O3WA
chains in the Genus database with same CATH topology
3FS5A 5HBQA 3ICTA 3OLHA 3D1PA 3FNJA 4WH7A 1CWTA 2EG4B 5LAOA 1H4MX 2GWFA 1BOIA 1YS0A 2FSXA 2MOLA 2OUCA 2A2KA 2EG4A 3G5JA 5HBPA 5HPAA 2KL3A 1WV9A 1RHSA 2JTRA 2MOIA 4JGTA 1CWRA 1GMXA 3I3UA 1YMKA 1QB0A 1YT8A 1T3KA 3AAYA 3I2VA 2K0ZA 2IFDA 2WLXA 1RHDA 1C25A 1HZMA 4F67A 2DCQA 4OCGA 1ORBA 1URHA 1CWSA 3NTDA 2JTQA 5LAMA 2EG3A 3AAXA 1UARA 3P3AA 3TP9A 3OP3A 3FLHA 5HBLA 5HBOA 2JTSA 3UTNX 1GN0A 3NT6A 3ICSA 1WHBA 3ICRA 3IPOA 2UZQA 3HZUA 2VSWA 3NHVA 3F4AA 1H4KX 3TG3A 1YM9A 3FOJA 4WH9A 1YMLA 3HWIA 3ILMA 3TG1B 1OKGA 3HIXA 3K9RA 1QXNA 1E0CA 1TQ1A 3NTAA 2HHGA 3IPPA 2IFVA 3IWHA 2J6PA 2WLRA 3GK5A 2ORAA 1DP2A 1YMDA 1BOHA 3R2UA 2MRMA 1VEEA 3MZZA 3O3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FS5 A;  5HBQ A;  3ICT A;  3OLH A;  3D1P A;  3FNJ A;  4WH7 A;  1CWT A;  2EG4 B;  5LAO A;  1H4M X;  2GWF A;  1BOI A;  1YS0 A;  2FSX A;  2MOL A;  2OUC A;  2A2K A;  2EG4 A;  3G5J A;  5HBP A;  5HPA A;  2KL3 A;  1WV9 A;  1RHS A;  2JTR A;  2MOI A;  4JGT A;  1CWR A;  1GMX A;  3I3U A;  1YMK A;  1QB0 A;  1YT8 A;  1T3K A;  3AAY A;  3I2V A;  2K0Z A;  2IFD A;  2WLX A;  1RHD A;  1C25 A;  1HZM A;  4F67 A;  2DCQ A;  4OCG A;  1ORB A;  1URH A;  1CWS A;  3NTD A;  2JTQ A;  5LAM A;  2EG3 A;  3AAX A;  1UAR A;  3P3A A;  3TP9 A;  3OP3 A;  3FLH A;  5HBL A;  5HBO A;  2JTS A;  3UTN X;  1GN0 A;  3NT6 A;  3ICS A;  1WHB A;  3ICR A;  3IPO A;  2UZQ A;  3HZU A;  2VSW A;  3NHV A;  3F4A A;  1H4K X;  3TG3 A;  1YM9 A;  3FOJ A;  4WH9 A;  1YML A;  3HWI A;  3ILM A;  3TG1 B;  1OKG A;  3HIX A;  3K9R A;  1QXN A;  1E0C A;  1TQ1 A;  3NTA A;  2HHG A;  3IPP A;  2IFV A;  3IWH A;  2J6P A;  2WLR A;  3GK5 A;  2ORA A;  1DP2 A;  1YMD A;  1BOH A;  3R2U A;  2MRM A;  1VEE A;  3MZZ A;  3O3W A; 
#chains in the Genus database with same CATH topology
 3FS5 A;  5HBQ A;  3ICT A;  3OLH A;  3D1P A;  3FNJ A;  4WH7 A;  1CWT A;  2EG4 B;  5LAO A;  1H4M X;  2GWF A;  1BOI A;  1YS0 A;  2FSX A;  2MOL A;  2OUC A;  2A2K A;  2EG4 A;  3G5J A;  5HBP A;  5HPA A;  2KL3 A;  1WV9 A;  1RHS A;  2JTR A;  2Q82 A;  2MOI A;  4JGT A;  1CWR A;  1GMX A;  3I3U A;  1YMK A;  1QB0 A;  1YT8 A;  1T3K A;  3AAY A;  3I2V A;  2K0Z A;  2IFD A;  2WLX A;  1RHD A;  1C25 A;  1HZM A;  4F67 A;  2DCQ A;  4OCG A;  1ORB A;  1URH A;  1CWS A;  3NTD A;  2JTQ A;  5LAM A;  2EG3 A;  3AAX A;  1UAR A;  3P3A A;  3TP9 A;  3OP3 A;  3FLH A;  5HBL A;  5HBO A;  2JTS A;  3UTN X;  1GN0 A;  3NT6 A;  3ICS A;  1WHB A;  3ICR A;  3IPO A;  2UZQ A;  3HZU A;  2VSW A;  3NHV A;  3F4A A;  1H4K X;  3TG3 A;  1YM9 A;  3FOJ A;  4WH9 A;  1YML A;  3HWI A;  3ILM A;  3TG1 B;  1OKG A;  3HIX A;  3K9R A;  1QXN A;  1E0C A;  1TQ1 A;  3NTA A;  2HHG A;  3IPP A;  2IFV A;  3IWH A;  2J6P A;  2WLR A;  3GK5 A;  2ORA A;  1DP2 A;  1YMD A;  1BOH A;  3R2U A;  2MRM A;  1VEE A;  3MZZ A;  3O3W A; 
#chains in the Genus database with same CATH homology
 3FS5 A;  5HBQ A;  3ICT A;  3OLH A;  3D1P A;  3FNJ A;  4WH7 A;  1CWT A;  2EG4 B;  5LAO A;  1H4M X;  2GWF A;  1BOI A;  1YS0 A;  2FSX A;  2MOL A;  2OUC A;  2A2K A;  2EG4 A;  3G5J A;  5HBP A;  5HPA A;  2KL3 A;  1WV9 A;  1RHS A;  2JTR A;  2MOI A;  4JGT A;  1CWR A;  1GMX A;  3I3U A;  1YMK A;  1QB0 A;  1YT8 A;  1T3K A;  3AAY A;  3I2V A;  2K0Z A;  2IFD A;  2WLX A;  1RHD A;  1C25 A;  1HZM A;  4F67 A;  2DCQ A;  4OCG A;  1ORB A;  1URH A;  1CWS A;  3NTD A;  2JTQ A;  5LAM A;  2EG3 A;  3AAX A;  1UAR A;  3P3A A;  3TP9 A;  3OP3 A;  3FLH A;  5HBL A;  5HBO A;  2JTS A;  3UTN X;  1GN0 A;  3NT6 A;  3ICS A;  1WHB A;  3ICR A;  3IPO A;  2UZQ A;  3HZU A;  2VSW A;  3NHV A;  3F4A A;  1H4K X;  3TG3 A;  1YM9 A;  3FOJ A;  4WH9 A;  1YML A;  3HWI A;  3ILM A;  3TG1 B;  1OKG A;  3HIX A;  3K9R A;  1QXN A;  1E0C A;  1TQ1 A;  3NTA A;  2HHG A;  3IPP A;  2IFV A;  3IWH A;  2J6P A;  2WLR A;  3GK5 A;  2ORA A;  1DP2 A;  1YMD A;  1BOH A;  3R2U A;  2MRM A;  1VEE A;  3MZZ A;  3O3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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