2JTQA

Rhodanese from e.coli
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
85
structure length
85
Chain Sequence
AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structures and backbone dynamics of Escherichia coli rhodanese PspE in its sulfur-free and persulfide-intermediate forms: implications for the catalytic mechanism of rhodanese.
pubmed doi rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords Phage shock protein E
total genus 30
structure length 85
sequence length 85
ec nomenclature ec 2.8.1.1: Thiosulfate sulfurtransferase.
pdb deposition date 2007-08-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2jtqA00
1C25A 4WH7A 1WHBA 1CWSA 2JTSA 1CWTA 3F4AA 3TG1B 3IWHA 2MOIA 1ORBA 1QXNA 2WLRA 2IFDA 5LAOA 1GN0A 1YMKA 3ICTA 1OKGA 2EG4A 1WV9A 1YM9A 2MOLA 3MZZA 3AAYA 3R2UA 3NT6A 3NTAA 2KL3A 2WLXA 1RHDA 1DP2A 1VEEA 1YS0A 2MRMA 1YMDA 3ILMA 2JTRA 2EG4B 1RHSA 3FS5A 1UARA 1TQ1A 2VSWA 5HBQA 2JTQA 2ORAA 5HBLA 5HPAA 1URHA 2HHGA 3HZUA 2DCQA 4WH9A 3FLHA 3FNJA 1H4MX 2OUCA 2J6PA 3HIXA 3AAXA 3G5JA 1BOIA 3K9RA 3I2VA 1T3KA 2FSXA 3TP9A 3IPPA 2IFVA 1HZMA 4JGTA 1E0CA 3GK5A 2EG3A 4F67A 1QB0A 3I3UA 3ICSA 1H4KX 3OLHA 1YT8A 4OCGA 5LAMA 3ICRA 3TG3A 1BOHA 3IPOA 2UZQA 2K0ZA 3NHVA 5HBOA 1YMLA 2A2KA 1CWRA 3NTDA 3FOJA 3HWIA 3P3AA 3UTNX 3D1PA 1GMXA 3O3WA 3OP3A 5HBPA 2GWFA
chains in the Genus database with same CATH superfamily
1C25A 4WH7A 1WHBA 1CWSA 2JTSA 1CWTA 3F4AA 3TG1B 3IWHA 2MOIA 1ORBA 1QXNA 2WLRA 2IFDA 5LAOA 1GN0A 1YMKA 3ICTA 1OKGA 2EG4A 1WV9A 1YM9A 2MOLA 3MZZA 3AAYA 3R2UA 3NT6A 3NTAA 2KL3A 2WLXA 1RHDA 1DP2A 1VEEA 1YS0A 2MRMA 1YMDA 3ILMA 2JTRA 2EG4B 1RHSA 3FS5A 1UARA 1TQ1A 2VSWA 5HBQA 2JTQA 2ORAA 5HBLA 5HPAA 1URHA 2HHGA 3HZUA 2DCQA 4WH9A 3FLHA 3FNJA 1H4MX 2OUCA 2J6PA 3HIXA 3AAXA 3G5JA 1BOIA 3K9RA 3I2VA 1T3KA 2FSXA 3TP9A 3IPPA 2IFVA 1HZMA 4JGTA 1E0CA 3GK5A 2EG3A 4F67A 1QB0A 3I3UA 3ICSA 1H4KX 3OLHA 1YT8A 4OCGA 5LAMA 3ICRA 3TG3A 1BOHA 3IPOA 2UZQA 2K0ZA 3NHVA 5HBOA 1YMLA 2A2KA 1CWRA 3NTDA 3FOJA 3HWIA 3P3AA 3UTNX 3D1PA 1GMXA 2Q82A 3O3WA 3OP3A 5HBPA 2GWFA
chains in the Genus database with same CATH topology
1C25A 4WH7A 1WHBA 1CWSA 2JTSA 1CWTA 3F4AA 3TG1B 3IWHA 2MOIA 1ORBA 1QXNA 2WLRA 2IFDA 5LAOA 1GN0A 1YMKA 3ICTA 1OKGA 2EG4A 1WV9A 1YM9A 2MOLA 3MZZA 3AAYA 3R2UA 3NT6A 3NTAA 2KL3A 2WLXA 1RHDA 1DP2A 1VEEA 1YS0A 2MRMA 1YMDA 3ILMA 2JTRA 2EG4B 1RHSA 3FS5A 1UARA 1TQ1A 2VSWA 5HBQA 2JTQA 2ORAA 5HBLA 5HPAA 1URHA 2HHGA 3HZUA 2DCQA 4WH9A 3FLHA 3FNJA 1H4MX 2OUCA 2J6PA 3HIXA 3AAXA 3G5JA 1BOIA 3K9RA 3I2VA 1T3KA 2FSXA 3TP9A 3IPPA 2IFVA 1HZMA 4JGTA 1E0CA 3GK5A 2EG3A 4F67A 1QB0A 3I3UA 3ICSA 1H4KX 3OLHA 1YT8A 4OCGA 5LAMA 3ICRA 3TG3A 1BOHA 3IPOA 2UZQA 2K0ZA 3NHVA 5HBOA 1YMLA 2A2KA 1CWRA 3NTDA 3FOJA 3HWIA 3P3AA 3UTNX 3D1PA 1GMXA 3O3WA 3OP3A 5HBPA 2GWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C25 A;  4WH7 A;  1WHB A;  1CWS A;  2JTS A;  1CWT A;  3F4A A;  3TG1 B;  3IWH A;  2MOI A;  1ORB A;  1QXN A;  2WLR A;  2IFD A;  5LAO A;  1GN0 A;  1YMK A;  3ICT A;  1OKG A;  2EG4 A;  1WV9 A;  1YM9 A;  2MOL A;  3MZZ A;  3AAY A;  3R2U A;  3NT6 A;  3NTA A;  2KL3 A;  2WLX A;  1RHD A;  1DP2 A;  1VEE A;  1YS0 A;  2MRM A;  1YMD A;  3ILM A;  2JTR A;  2EG4 B;  1RHS A;  3FS5 A;  1UAR A;  1TQ1 A;  2VSW A;  5HBQ A;  2JTQ A;  2ORA A;  5HBL A;  5HPA A;  1URH A;  2HHG A;  3HZU A;  2DCQ A;  4WH9 A;  3FLH A;  3FNJ A;  1H4M X;  2OUC A;  2J6P A;  3HIX A;  3AAX A;  3G5J A;  1BOI A;  3K9R A;  3I2V A;  1T3K A;  2FSX A;  3TP9 A;  3IPP A;  2IFV A;  1HZM A;  4JGT A;  1E0C A;  3GK5 A;  2EG3 A;  4F67 A;  1QB0 A;  3I3U A;  3ICS A;  1H4K X;  3OLH A;  1YT8 A;  4OCG A;  5LAM A;  3ICR A;  3TG3 A;  1BOH A;  3IPO A;  2UZQ A;  2K0Z A;  3NHV A;  5HBO A;  1YML A;  2A2K A;  1CWR A;  3NTD A;  3FOJ A;  3HWI A;  3P3A A;  3UTN X;  3D1P A;  1GMX A;  3O3W A;  3OP3 A;  5HBP A;  2GWF A; 
#chains in the Genus database with same CATH topology
 1C25 A;  4WH7 A;  1WHB A;  1CWS A;  2JTS A;  1CWT A;  3F4A A;  3TG1 B;  3IWH A;  2MOI A;  1ORB A;  1QXN A;  2WLR A;  2IFD A;  5LAO A;  1GN0 A;  1YMK A;  3ICT A;  1OKG A;  2EG4 A;  1WV9 A;  1YM9 A;  2MOL A;  3MZZ A;  3AAY A;  3R2U A;  3NT6 A;  3NTA A;  2KL3 A;  2WLX A;  1RHD A;  1DP2 A;  1VEE A;  1YS0 A;  2MRM A;  1YMD A;  3ILM A;  2JTR A;  2EG4 B;  1RHS A;  3FS5 A;  1UAR A;  1TQ1 A;  2VSW A;  5HBQ A;  2JTQ A;  2ORA A;  5HBL A;  5HPA A;  1URH A;  2HHG A;  3HZU A;  2DCQ A;  4WH9 A;  3FLH A;  3FNJ A;  1H4M X;  2OUC A;  2J6P A;  3HIX A;  3AAX A;  3G5J A;  1BOI A;  3K9R A;  3I2V A;  1T3K A;  2FSX A;  3TP9 A;  3IPP A;  2IFV A;  1HZM A;  4JGT A;  1E0C A;  3GK5 A;  2EG3 A;  4F67 A;  1QB0 A;  3I3U A;  3ICS A;  1H4K X;  3OLH A;  1YT8 A;  4OCG A;  5LAM A;  3ICR A;  3TG3 A;  1BOH A;  3IPO A;  2UZQ A;  2K0Z A;  3NHV A;  5HBO A;  1YML A;  2A2K A;  1CWR A;  3NTD A;  3FOJ A;  3HWI A;  3P3A A;  3UTN X;  3D1P A;  1GMX A;  2Q82 A;  3O3W A;  3OP3 A;  5HBP A;  2GWF A; 
#chains in the Genus database with same CATH homology
 1C25 A;  4WH7 A;  1WHB A;  1CWS A;  2JTS A;  1CWT A;  3F4A A;  3TG1 B;  3IWH A;  2MOI A;  1ORB A;  1QXN A;  2WLR A;  2IFD A;  5LAO A;  1GN0 A;  1YMK A;  3ICT A;  1OKG A;  2EG4 A;  1WV9 A;  1YM9 A;  2MOL A;  3MZZ A;  3AAY A;  3R2U A;  3NT6 A;  3NTA A;  2KL3 A;  2WLX A;  1RHD A;  1DP2 A;  1VEE A;  1YS0 A;  2MRM A;  1YMD A;  3ILM A;  2JTR A;  2EG4 B;  1RHS A;  3FS5 A;  1UAR A;  1TQ1 A;  2VSW A;  5HBQ A;  2JTQ A;  2ORA A;  5HBL A;  5HPA A;  1URH A;  2HHG A;  3HZU A;  2DCQ A;  4WH9 A;  3FLH A;  3FNJ A;  1H4M X;  2OUC A;  2J6P A;  3HIX A;  3AAX A;  3G5J A;  1BOI A;  3K9R A;  3I2V A;  1T3K A;  2FSX A;  3TP9 A;  3IPP A;  2IFV A;  1HZM A;  4JGT A;  1E0C A;  3GK5 A;  2EG3 A;  4F67 A;  1QB0 A;  3I3U A;  3ICS A;  1H4K X;  3OLH A;  1YT8 A;  4OCG A;  5LAM A;  3ICR A;  3TG3 A;  1BOH A;  3IPO A;  2UZQ A;  2K0Z A;  3NHV A;  5HBO A;  1YML A;  2A2K A;  1CWR A;  3NTD A;  3FOJ A;  3HWI A;  3P3A A;  3UTN X;  3D1P A;  1GMX A;  3O3W A;  3OP3 A;  5HBP A;  2GWF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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