2JTQA

Rhodanese from e.coli
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
85
structure length
85
Chain Sequence
AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution structures and backbone dynamics of Escherichia coli rhodanese PspE in its sulfur-free and persulfide-intermediate forms: implications for the catalytic mechanism of rhodanese.
pubmed doi rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords Phage shock protein E
total genus 30
structure length 85
sequence length 85
ec nomenclature ec 2.8.1.1: Thiosulfate sulfurtransferase.
pdb deposition date 2007-08-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2jtqA00
2ORAA 5LAMA 1GN0A 2K0ZA 1CWSA 3NTAA 1YMDA 1RHDA 1CWRA 2WLRA 1URHA 3OP3A 1GMXA 1DP2A 3FOJA 2VSWA 5HBQA 5HPAA 3IPOA 3AAYA 3AAXA 1BOIA 2EG4A 2FSXA 3TG1B 3I3UA 4JGTA 3P3AA 2OUCA 2A2KA 1YT8A 2EG4B 1E0CA 3UTNX 2JTQA 3NTDA 3GK5A 3F4AA 2IFDA 1H4KX 3FS5A 1QXNA 3K9RA 5LAOA 3HIXA 3ICRA 1UARA 2MRMA 3HWIA 2JTSA 1YMLA 3IWHA 1BOHA 1QB0A 4OCGA 3ICTA 3R2UA 1CWTA 1WV9A 3OLHA 2MOIA 1OKGA 2MOLA 3NT6A 3G5JA 1HZMA 3ILMA 1H4MX 3FLHA 2EG3A 1VEEA 3D1PA 1TQ1A 3FNJA 1ORBA 2JTRA 4WH7A 3IPPA 2WLXA 4WH9A 2DCQA 1RHSA 1T3KA 3HZUA 3MZZA 1C25A 3ICSA 2IFVA 5HBPA 1YM9A 1YS0A 2GWFA 3NHVA 3TG3A 3O3WA 5HBLA 1WHBA 3TP9A 4F67A 5HBOA 2KL3A 2HHGA 1YMKA 3I2VA 2UZQA 2J6PA
chains in the Genus database with same CATH superfamily
2ORAA 5LAMA 1GN0A 2K0ZA 1CWSA 3NTAA 1YMDA 1RHDA 1CWRA 2WLRA 1URHA 3OP3A 1GMXA 1DP2A 3FOJA 2VSWA 5HBQA 5HPAA 3IPOA 3AAYA 3AAXA 1BOIA 2EG4A 2FSXA 3TG1B 3I3UA 4JGTA 3P3AA 2OUCA 2A2KA 1YT8A 2EG4B 1E0CA 3UTNX 2JTQA 3NTDA 3GK5A 3F4AA 2IFDA 1H4KX 3FS5A 1QXNA 3K9RA 5LAOA 3HIXA 3ICRA 1UARA 2MRMA 3HWIA 2JTSA 1YMLA 3IWHA 1BOHA 1QB0A 4OCGA 3ICTA 3R2UA 1CWTA 1WV9A 3OLHA 2MOIA 1OKGA 2MOLA 3NT6A 3G5JA 1HZMA 3ILMA 1H4MX 3FLHA 2EG3A 1VEEA 3D1PA 1TQ1A 3FNJA 1ORBA 2JTRA 4WH7A 3IPPA 2WLXA 4WH9A 2DCQA 1RHSA 1T3KA 3HZUA 3MZZA 1C25A 3ICSA 2IFVA 5HBPA 1YM9A 1YS0A 2GWFA 3NHVA 3TG3A 3O3WA 5HBLA 1WHBA 3TP9A 4F67A 5HBOA 2KL3A 2HHGA 2Q82A 1YMKA 3I2VA 2UZQA 2J6PA
chains in the Genus database with same CATH topology
2ORAA 5LAMA 1GN0A 2K0ZA 1CWSA 3NTAA 1YMDA 1RHDA 1CWRA 2WLRA 1URHA 3OP3A 1GMXA 1DP2A 3FOJA 2VSWA 5HBQA 5HPAA 3IPOA 3AAYA 3AAXA 1BOIA 2EG4A 2FSXA 3TG1B 3I3UA 4JGTA 3P3AA 2OUCA 2A2KA 1YT8A 2EG4B 1E0CA 3UTNX 2JTQA 3NTDA 3GK5A 3F4AA 2IFDA 1H4KX 3FS5A 1QXNA 3K9RA 5LAOA 3HIXA 3ICRA 1UARA 2MRMA 3HWIA 2JTSA 1YMLA 3IWHA 1BOHA 1QB0A 4OCGA 3ICTA 3R2UA 1CWTA 1WV9A 3OLHA 2MOIA 1OKGA 2MOLA 3NT6A 3G5JA 1HZMA 3ILMA 1H4MX 3FLHA 2EG3A 1VEEA 3D1PA 1TQ1A 3FNJA 1ORBA 2JTRA 4WH7A 3IPPA 2WLXA 4WH9A 2DCQA 1RHSA 1T3KA 3HZUA 3MZZA 1C25A 3ICSA 2IFVA 5HBPA 1YM9A 1YS0A 2GWFA 3NHVA 3TG3A 3O3WA 5HBLA 1WHBA 3TP9A 4F67A 5HBOA 2KL3A 2HHGA 1YMKA 3I2VA 2UZQA 2J6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ORA A;  5LAM A;  1GN0 A;  2K0Z A;  1CWS A;  3NTA A;  1YMD A;  1RHD A;  1CWR A;  2WLR A;  1URH A;  3OP3 A;  1GMX A;  1DP2 A;  3FOJ A;  2VSW A;  5HBQ A;  5HPA A;  3IPO A;  3AAY A;  3AAX A;  1BOI A;  2EG4 A;  2FSX A;  3TG1 B;  3I3U A;  4JGT A;  3P3A A;  2OUC A;  2A2K A;  1YT8 A;  2EG4 B;  1E0C A;  3UTN X;  2JTQ A;  3NTD A;  3GK5 A;  3F4A A;  2IFD A;  1H4K X;  3FS5 A;  1QXN A;  3K9R A;  5LAO A;  3HIX A;  3ICR A;  1UAR A;  2MRM A;  3HWI A;  2JTS A;  1YML A;  3IWH A;  1BOH A;  1QB0 A;  4OCG A;  3ICT A;  3R2U A;  1CWT A;  1WV9 A;  3OLH A;  2MOI A;  1OKG A;  2MOL A;  3NT6 A;  3G5J A;  1HZM A;  3ILM A;  1H4M X;  3FLH A;  2EG3 A;  1VEE A;  3D1P A;  1TQ1 A;  3FNJ A;  1ORB A;  2JTR A;  4WH7 A;  3IPP A;  2WLX A;  4WH9 A;  2DCQ A;  1RHS A;  1T3K A;  3HZU A;  3MZZ A;  1C25 A;  3ICS A;  2IFV A;  5HBP A;  1YM9 A;  1YS0 A;  2GWF A;  3NHV A;  3TG3 A;  3O3W A;  5HBL A;  1WHB A;  3TP9 A;  4F67 A;  5HBO A;  2KL3 A;  2HHG A;  1YMK A;  3I2V A;  2UZQ A;  2J6P A; 
#chains in the Genus database with same CATH topology
 2ORA A;  5LAM A;  1GN0 A;  2K0Z A;  1CWS A;  3NTA A;  1YMD A;  1RHD A;  1CWR A;  2WLR A;  1URH A;  3OP3 A;  1GMX A;  1DP2 A;  3FOJ A;  2VSW A;  5HBQ A;  5HPA A;  3IPO A;  3AAY A;  3AAX A;  1BOI A;  2EG4 A;  2FSX A;  3TG1 B;  3I3U A;  4JGT A;  3P3A A;  2OUC A;  2A2K A;  1YT8 A;  2EG4 B;  1E0C A;  3UTN X;  2JTQ A;  3NTD A;  3GK5 A;  3F4A A;  2IFD A;  1H4K X;  3FS5 A;  1QXN A;  3K9R A;  5LAO A;  3HIX A;  3ICR A;  1UAR A;  2MRM A;  3HWI A;  2JTS A;  1YML A;  3IWH A;  1BOH A;  1QB0 A;  4OCG A;  3ICT A;  3R2U A;  1CWT A;  1WV9 A;  3OLH A;  2MOI A;  1OKG A;  2MOL A;  3NT6 A;  3G5J A;  1HZM A;  3ILM A;  1H4M X;  3FLH A;  2EG3 A;  1VEE A;  3D1P A;  1TQ1 A;  3FNJ A;  1ORB A;  2JTR A;  4WH7 A;  3IPP A;  2WLX A;  4WH9 A;  2DCQ A;  1RHS A;  1T3K A;  3HZU A;  3MZZ A;  1C25 A;  3ICS A;  2IFV A;  5HBP A;  1YM9 A;  1YS0 A;  2GWF A;  3NHV A;  3TG3 A;  3O3W A;  5HBL A;  1WHB A;  3TP9 A;  4F67 A;  5HBO A;  2KL3 A;  2HHG A;  2Q82 A;  1YMK A;  3I2V A;  2UZQ A;  2J6P A; 
#chains in the Genus database with same CATH homology
 2ORA A;  5LAM A;  1GN0 A;  2K0Z A;  1CWS A;  3NTA A;  1YMD A;  1RHD A;  1CWR A;  2WLR A;  1URH A;  3OP3 A;  1GMX A;  1DP2 A;  3FOJ A;  2VSW A;  5HBQ A;  5HPA A;  3IPO A;  3AAY A;  3AAX A;  1BOI A;  2EG4 A;  2FSX A;  3TG1 B;  3I3U A;  4JGT A;  3P3A A;  2OUC A;  2A2K A;  1YT8 A;  2EG4 B;  1E0C A;  3UTN X;  2JTQ A;  3NTD A;  3GK5 A;  3F4A A;  2IFD A;  1H4K X;  3FS5 A;  1QXN A;  3K9R A;  5LAO A;  3HIX A;  3ICR A;  1UAR A;  2MRM A;  3HWI A;  2JTS A;  1YML A;  3IWH A;  1BOH A;  1QB0 A;  4OCG A;  3ICT A;  3R2U A;  1CWT A;  1WV9 A;  3OLH A;  2MOI A;  1OKG A;  2MOL A;  3NT6 A;  3G5J A;  1HZM A;  3ILM A;  1H4M X;  3FLH A;  2EG3 A;  1VEE A;  3D1P A;  1TQ1 A;  3FNJ A;  1ORB A;  2JTR A;  4WH7 A;  3IPP A;  2WLX A;  4WH9 A;  2DCQ A;  1RHS A;  1T3K A;  3HZU A;  3MZZ A;  1C25 A;  3ICS A;  2IFV A;  5HBP A;  1YM9 A;  1YS0 A;  2GWF A;  3NHV A;  3TG3 A;  3O3W A;  5HBL A;  1WHB A;  3TP9 A;  4F67 A;  5HBO A;  2KL3 A;  2HHG A;  1YMK A;  3I2V A;  2UZQ A;  2J6P A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...