2JTRA

Rhodanese persulfide from e. coli
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
85
structure length
85
Chain Sequence
AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKVKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structures and backbone dynamics of Escherichia coli rhodanese PspE in its sulfur-free and persulfide-intermediate forms: implications for the catalytic mechanism of rhodanese.
pubmed doi rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords Phage shock protein E
total genus 24
structure length 85
sequence length 85
ec nomenclature ec 2.8.1.1: Thiosulfate sulfurtransferase.
pdb deposition date 2007-08-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2jtrA00
3R2UA 2VSWA 3FNJA 1GMXA 3OLHA 3NTDA 1CWTA 3I3UA 2MOIA 3G5JA 2JTRA 1RHDA 2EG4B 1VEEA 1YT8A 5HBOA 3HWIA 4JGTA 4WH7A 1UARA 2UZQA 3FS5A 2FSXA 1URHA 3AAXA 1RHSA 2MOLA 4WH9A 1E0CA 3IPOA 3HZUA 1GN0A 1CWSA 1H4KX 2IFVA 4OCGA 2WLRA 3O3WA 3TP9A 1C25A 5HBLA 1ORBA 1T3KA 1CWRA 2EG3A 3I2VA 4F67A 2JTSA 1QB0A 1WHBA 2HHGA 2MRMA 3K9RA 3P3AA 5HPAA 2DCQA 3FOJA 1BOHA 1YS0A 1BOIA 3NHVA 1HZMA 3MZZA 2WLXA 2A2KA 3NT6A 3AAYA 5HBPA 3F4AA 3IPPA 3UTNX 2GWFA 3OP3A 3IWHA 1OKGA 3D1PA 1H4MX 1YMLA 2K0ZA 5LAMA 3GK5A 3ICTA 5LAOA 3ICRA 1TQ1A 2JTQA 3ICSA 2KL3A 1DP2A 2IFDA 5HBQA 2EG4A 1QXNA 3NTAA 3TG1B 1YM9A 1YMDA 3TG3A 2ORAA 1WV9A 2OUCA 3ILMA 1YMKA 3HIXA 2J6PA 3FLHA
chains in the Genus database with same CATH superfamily
2Q82A 3R2UA 2VSWA 3FNJA 1GMXA 3OLHA 3NTDA 1CWTA 3I3UA 2MOIA 3G5JA 2JTRA 1RHDA 2EG4B 1VEEA 1YT8A 5HBOA 3HWIA 4JGTA 4WH7A 1UARA 2UZQA 3FS5A 2FSXA 1URHA 3AAXA 1RHSA 2MOLA 4WH9A 1E0CA 3IPOA 3HZUA 1GN0A 1CWSA 1H4KX 2IFVA 4OCGA 2WLRA 3O3WA 3TP9A 1C25A 5HBLA 1ORBA 1T3KA 1CWRA 2EG3A 3I2VA 4F67A 2JTSA 1QB0A 1WHBA 2HHGA 2MRMA 3K9RA 3P3AA 5HPAA 2DCQA 3FOJA 1BOHA 1YS0A 1BOIA 3NHVA 1HZMA 3MZZA 2WLXA 2A2KA 3NT6A 3AAYA 5HBPA 3F4AA 3IPPA 3UTNX 2GWFA 3OP3A 3IWHA 1OKGA 3D1PA 1H4MX 1YMLA 2K0ZA 5LAMA 3GK5A 3ICTA 5LAOA 3ICRA 1TQ1A 2JTQA 3ICSA 2KL3A 1DP2A 2IFDA 5HBQA 2EG4A 1QXNA 3NTAA 3TG1B 1YM9A 1YMDA 3TG3A 2ORAA 1WV9A 2OUCA 3ILMA 1YMKA 3HIXA 2J6PA 3FLHA
chains in the Genus database with same CATH topology
3R2UA 2VSWA 3FNJA 1GMXA 3OLHA 3NTDA 1CWTA 3I3UA 2MOIA 3G5JA 2JTRA 1RHDA 2EG4B 1VEEA 1YT8A 5HBOA 3HWIA 4JGTA 4WH7A 1UARA 2UZQA 3FS5A 2FSXA 1URHA 3AAXA 1RHSA 2MOLA 4WH9A 1E0CA 3IPOA 3HZUA 1GN0A 1CWSA 1H4KX 2IFVA 4OCGA 2WLRA 3O3WA 3TP9A 1C25A 5HBLA 1ORBA 1T3KA 1CWRA 2EG3A 3I2VA 4F67A 2JTSA 1QB0A 1WHBA 2HHGA 2MRMA 3K9RA 3P3AA 5HPAA 2DCQA 3FOJA 1BOHA 1YS0A 1BOIA 3NHVA 1HZMA 3MZZA 2WLXA 2A2KA 3NT6A 3AAYA 5HBPA 3F4AA 3IPPA 3UTNX 2GWFA 3OP3A 3IWHA 1OKGA 3D1PA 1H4MX 1YMLA 2K0ZA 5LAMA 3GK5A 3ICTA 5LAOA 3ICRA 1TQ1A 2JTQA 3ICSA 2KL3A 1DP2A 2IFDA 5HBQA 2EG4A 1QXNA 3NTAA 3TG1B 1YM9A 1YMDA 3TG3A 2ORAA 1WV9A 2OUCA 3ILMA 1YMKA 3HIXA 2J6PA 3FLHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R2U A;  2VSW A;  3FNJ A;  1GMX A;  3OLH A;  3NTD A;  1CWT A;  3I3U A;  2MOI A;  3G5J A;  2JTR A;  1RHD A;  2EG4 B;  1VEE A;  1YT8 A;  5HBO A;  3HWI A;  4JGT A;  4WH7 A;  1UAR A;  2UZQ A;  3FS5 A;  2FSX A;  1URH A;  3AAX A;  1RHS A;  2MOL A;  4WH9 A;  1E0C A;  3IPO A;  3HZU A;  1GN0 A;  1CWS A;  1H4K X;  2IFV A;  4OCG A;  2WLR A;  3O3W A;  3TP9 A;  1C25 A;  5HBL A;  1ORB A;  1T3K A;  1CWR A;  2EG3 A;  3I2V A;  4F67 A;  2JTS A;  1QB0 A;  1WHB A;  2HHG A;  2MRM A;  3K9R A;  3P3A A;  5HPA A;  2DCQ A;  3FOJ A;  1BOH A;  1YS0 A;  1BOI A;  3NHV A;  1HZM A;  3MZZ A;  2WLX A;  2A2K A;  3NT6 A;  3AAY A;  5HBP A;  3F4A A;  3IPP A;  3UTN X;  2GWF A;  3OP3 A;  3IWH A;  1OKG A;  3D1P A;  1H4M X;  1YML A;  2K0Z A;  5LAM A;  3GK5 A;  3ICT A;  5LAO A;  3ICR A;  1TQ1 A;  2JTQ A;  3ICS A;  2KL3 A;  1DP2 A;  2IFD A;  5HBQ A;  2EG4 A;  1QXN A;  3NTA A;  3TG1 B;  1YM9 A;  1YMD A;  3TG3 A;  2ORA A;  1WV9 A;  2OUC A;  3ILM A;  1YMK A;  3HIX A;  2J6P A;  3FLH A; 
#chains in the Genus database with same CATH topology
 2Q82 A;  3R2U A;  2VSW A;  3FNJ A;  1GMX A;  3OLH A;  3NTD A;  1CWT A;  3I3U A;  2MOI A;  3G5J A;  2JTR A;  1RHD A;  2EG4 B;  1VEE A;  1YT8 A;  5HBO A;  3HWI A;  4JGT A;  4WH7 A;  1UAR A;  2UZQ A;  3FS5 A;  2FSX A;  1URH A;  3AAX A;  1RHS A;  2MOL A;  4WH9 A;  1E0C A;  3IPO A;  3HZU A;  1GN0 A;  1CWS A;  1H4K X;  2IFV A;  4OCG A;  2WLR A;  3O3W A;  3TP9 A;  1C25 A;  5HBL A;  1ORB A;  1T3K A;  1CWR A;  2EG3 A;  3I2V A;  4F67 A;  2JTS A;  1QB0 A;  1WHB A;  2HHG A;  2MRM A;  3K9R A;  3P3A A;  5HPA A;  2DCQ A;  3FOJ A;  1BOH A;  1YS0 A;  1BOI A;  3NHV A;  1HZM A;  3MZZ A;  2WLX A;  2A2K A;  3NT6 A;  3AAY A;  5HBP A;  3F4A A;  3IPP A;  3UTN X;  2GWF A;  3OP3 A;  3IWH A;  1OKG A;  3D1P A;  1H4M X;  1YML A;  2K0Z A;  5LAM A;  3GK5 A;  3ICT A;  5LAO A;  3ICR A;  1TQ1 A;  2JTQ A;  3ICS A;  2KL3 A;  1DP2 A;  2IFD A;  5HBQ A;  2EG4 A;  1QXN A;  3NTA A;  3TG1 B;  1YM9 A;  1YMD A;  3TG3 A;  2ORA A;  1WV9 A;  2OUC A;  3ILM A;  1YMK A;  3HIX A;  2J6P A;  3FLH A; 
#chains in the Genus database with same CATH homology
 3R2U A;  2VSW A;  3FNJ A;  1GMX A;  3OLH A;  3NTD A;  1CWT A;  3I3U A;  2MOI A;  3G5J A;  2JTR A;  1RHD A;  2EG4 B;  1VEE A;  1YT8 A;  5HBO A;  3HWI A;  4JGT A;  4WH7 A;  1UAR A;  2UZQ A;  3FS5 A;  2FSX A;  1URH A;  3AAX A;  1RHS A;  2MOL A;  4WH9 A;  1E0C A;  3IPO A;  3HZU A;  1GN0 A;  1CWS A;  1H4K X;  2IFV A;  4OCG A;  2WLR A;  3O3W A;  3TP9 A;  1C25 A;  5HBL A;  1ORB A;  1T3K A;  1CWR A;  2EG3 A;  3I2V A;  4F67 A;  2JTS A;  1QB0 A;  1WHB A;  2HHG A;  2MRM A;  3K9R A;  3P3A A;  5HPA A;  2DCQ A;  3FOJ A;  1BOH A;  1YS0 A;  1BOI A;  3NHV A;  1HZM A;  3MZZ A;  2WLX A;  2A2K A;  3NT6 A;  3AAY A;  5HBP A;  3F4A A;  3IPP A;  3UTN X;  2GWF A;  3OP3 A;  3IWH A;  1OKG A;  3D1P A;  1H4M X;  1YML A;  2K0Z A;  5LAM A;  3GK5 A;  3ICT A;  5LAO A;  3ICR A;  1TQ1 A;  2JTQ A;  3ICS A;  2KL3 A;  1DP2 A;  2IFD A;  5HBQ A;  2EG4 A;  1QXN A;  3NTA A;  3TG1 B;  1YM9 A;  1YMD A;  3TG3 A;  2ORA A;  1WV9 A;  2OUC A;  3ILM A;  1YMK A;  3HIX A;  2J6P A;  3FLH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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