2JZ3C

Socs box elonginbc ternary complex
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
96
structure length
96
Chain Sequence
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYO1 (48-50)S1 (18-22)TI1 (23-26)AH1 (33-36)S2 (28-32)TIV2 (56-59)TIV3 (62-65)AH3 (67-84)TIV4 (87-90)TIV5 (96-99)TIV1 (53-56)S3 (59-61)AH2 (41-46)Updating...
connected with : NaN
molecule tags Transcription inhibitor/transcription
source organism Mus musculus
publication title The SOCS box domain of SOCS3: structure and interaction with the elonginBC-cullin5 ubiquitin ligase
pubmed doi rcsb
molecule keywords Suppressor of cytokine signaling 3
total genus 20
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2007-12-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2jz3C00
2ASSA 2VKPA 1R2BA 3M4TA 1VCBB 4UYIA 1FQVB 2P1OA 3C6OA 3M5BA 2IZVC 1QDWA 2FNJC 3B84A 1EOFA 3E4UA 3LNMB 5EUPA 1DSXA 3LBZA 5H7HA 4W9IB 3ZUNB 4BKSB 3WSOB 1NN7A 4U2NA 5FTAA 4J8ZA 3HU6A 4I6JC 4AP2A 5HZGC 4JTDB 1EODA 1BUOA 2P1QA 4BKTB 3KVTA 2ASTA 2NN2A 2MA9C 4W9LB 4CP3A 3OGKA 2PPIA 3BIMA 1QDVA 4ZOUA 2P1MA 4W9EB 4N9F5 2JZ3C 2P1NA 1R28A 2Z8HA 3L2OA 4AWJB 5LLIB 4W9HH 4CXJA 4EOZA 3ZTDB 1S1GA 1LM8C 3OGLA 5BXHA 2VPKA 1FS1B 3M8VA 2OVPA 2P1PA 2E32B 4BGCA 2C9WC 5IBKA 1A68A 2IHCA 4WQOC 3HQIA 1P22B 3ZTCB 2NZ0B 1EXBE 4APFA 4W9GB 5BXDA 4W9CB 3HVEA 1CS3A 3OHVA 3DCGB 5BO4C 5BXBA 2E31B 5JH5B 3DRZA 1HV2A 4CXIA 4JGHC 3C6NA 1FS2B 3M52A 3MKSA 3ZRFB 4CRHA 5A6RA 3ZNGB 5HYWB 4AJYC 3OGMA 3HVEB 4UIJA 2I2RA 3LUTB 5DADA 4W9KB 3GA1A 2A79B 5A15A 4B95B 2IF5A 1LQBB 1NEXA 4JTAB 3ZKJB 2OVRA 1EOEA 3ZRCB 1LDKD 4CXTA 3HTMA 4W9HB 3FKCA 4W9DB 1T1DA 2OVQA 4U2MA 2Q81A 3OHUA 4W9JB 5H7GA 3C6PA 4B9KB 3V7DA 4HXIA 4JTCB 4U77A 4B9KE 3I3NA 4W9FB 5DAFA 2YY9A 2R9RB 1R29A
chains in the Genus database with same CATH superfamily
2ASSA 2VKPA 1R2BA 3M4TA 1VCBB 4UYIA 1FQVB 2P1OA 3C6OA 3M5BA 2IZVC 1QDWA 2FNJC 3B84A 1EOFA 3E4UA 3LNMB 5EUPA 1DSXA 3LBZA 5H7HA 4W9IB 3ZUNB 4BKSB 3WSOB 1NN7A 4U2NA 5FTAA 4J8ZA 3HU6A 4I6JC 4AP2A 5HZGC 4JTDB 1EODA 1BUOA 2P1QA 4BKTB 3KVTA 2ASTA 2NN2A 2MA9C 4W9LB 4CP3A 3OGKA 2PPIA 3BIMA 1QDVA 4ZOUA 3DRXA 2P1MA 4W9EB 4N9F5 2JZ3C 2P1NA 1R28A 2Z8HA 3L2OA 4AWJB 5LLIB 4W9HH 4CXJA 4EOZA 3ZTDB 1S1GA 1LM8C 3OGLA 5BXHA 2VPKA 1FS1B 3M8VA 2OVPA 2P1PA 2E32B 4BGCA 2C9WC 5IBKA 1A68A 2IHCA 4WQOC 3HQIA 1P22B 3ZTCB 2NZ0B 1EXBE 4YY8A 4APFA 4W9GB 5BXDA 4W9CB 3HVEA 1CS3A 3OHVA 3DCGB 5BO4C 5BXBA 2E31B 5JH5B 3DRZA 1HV2A 4CXIA 4JGHC 3C6NA 1FS2B 3M52A 3MKSA 3ZRFB 4CRHA 5A6RA 3ZNGB 5HYWB 3DRYA 4AJYC 3OGMA 3HVEB 4UIJA 2I2RA 3LUTB 5DADA 4W9KB 3GA1A 2A79B 5A15A 4B95B 2IF5A 1LQBB 1NEXA 4JTAB 3ZKJB 2OVRA 1EOEA 3ZRCB 1LDKD 4CXTA 3HTMA 4W9HB 3FKCA 4W9DB 1T1DA 2OVQA 4U2MA 2Q81A 3OHUA 4W9JB 5H7GA 3C6PA 4ZGCA 4B9KB 3V7DA 4HXIA 4JTCB 4U77A 4B9KE 3I3NA 4W9FB 5DAFA 2YY9A 2R9RB 1R29A
chains in the Genus database with same CATH topology
2ASSA 2VKPA 1R2BA 3M4TA 1VCBB 4UYIA 1FQVB 2P1OA 3C6OA 3M5BA 2IZVC 1QDWA 2FNJC 3B84A 1EOFA 3E4UA 3LNMB 5EUPA 1DSXA 3LBZA 5H7HA 4W9IB 3ZUNB 4BKSB 3WSOB 1NN7A 4U2NA 5FTAA 4J8ZA 3HU6A 4I6JC 4AP2A 5HZGC 4JTDB 1EODA 1BUOA 2P1QA 4BKTB 3KVTA 2ASTA 2NN2A 2MA9C 4W9LB 4CP3A 3OGKA 2PPIA 3BIMA 1QDVA 4ZOUA 3DRXA 2P1MA 4W9EB 4N9F5 2JZ3C 2P1NA 1R28A 2Z8HA 3L2OA 4AWJB 5LLIB 4W9HH 4CXJA 4EOZA 3ZTDB 1S1GA 1LM8C 3OGLA 5BXHA 2VPKA 1FS1B 3M8VA 2OVPA 2P1PA 2E32B 4BGCA 2C9WC 5IBKA 1A68A 2IHCA 4WQOC 3HQIA 1P22B 3ZTCB 2NZ0B 1EXBE 4YY8A 4APFA 4W9GB 5BXDA 4W9CB 3HVEA 1CS3A 3OHVA 3DCGB 5BO4C 5BXBA 2E31B 5JH5B 3DRZA 1HV2A 4CXIA 4JGHC 3C6NA 1FS2B 3M52A 3MKSA 3ZRFB 4CRHA 5A6RA 3ZNGB 5HYWB 3DRYA 4AJYC 3OGMA 3HVEB 4UIJA 2I2RA 3LUTB 5DADA 4W9KB 3GA1A 2A79B 5A15A 4B95B 2IF5A 1LQBB 1NEXA 4JTAB 3ZKJB 2OVRA 1EOEA 3ZRCB 1LDKD 4CXTA 3HTMA 4W9HB 3FKCA 4W9DB 1T1DA 2OVQA 4U2MA 2Q81A 3OHUA 4W9JB 5H7GA 3C6PA 4ZGCA 4B9KB 3V7DA 4HXIA 4JTCB 4U77A 4B9KE 3I3NA 4W9FB 5DAFA 2YY9A 2R9RB 1R29A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2ASS A;  2VKP A;  1R2B A;  3M4T A;  1VCB B;  4UYI A;  1FQV B;  2P1O A;  3C6O A;  3M5B A;  2IZV C;  1QDW A;  2FNJ C;  3B84 A;  1EOF A;  3E4U A;  3LNM B;  5EUP A;  1DSX A;  3LBZ A;  5H7H A;  4W9I B;  3ZUN B;  4BKS B;  3WSO B;  1NN7 A;  4U2N A;  5FTA A;  4J8Z A;  3HU6 A;  4I6J C;  4AP2 A;  5HZG C;  4JTD B;  1EOD A;  1BUO A;  2P1Q A;  4BKT B;  3KVT A;  2AST A;  2NN2 A;  2MA9 C;  4W9L B;  4CP3 A;  3OGK A;  2PPI A;  3BIM A;  1QDV A;  4ZOU A;  2P1M A;  4W9E B;  4N9F 5;  2JZ3 C;  2P1N A;  1R28 A;  2Z8H A;  3L2O A;  4AWJ B;  5LLI B;  4W9H H;  4CXJ A;  4EOZ A;  3ZTD B;  1S1G A;  1LM8 C;  3OGL A;  5BXH A;  2VPK A;  1FS1 B;  3M8V A;  2OVP A;  2P1P A;  2E32 B;  4BGC A;  2C9W C;  5IBK A;  1A68 A;  2IHC A;  4WQO C;  3HQI A;  1P22 B;  3ZTC B;  2NZ0 B;  1EXB E;  4APF A;  4W9G B;  5BXD A;  4W9C B;  3HVE A;  1CS3 A;  3OHV A;  3DCG B;  5BO4 C;  5BXB A;  2E31 B;  5JH5 B;  3DRZ A;  1HV2 A;  4CXI A;  4JGH C;  3C6N A;  1FS2 B;  3M52 A;  3MKS A;  3ZRF B;  4CRH A;  5A6R A;  3ZNG B;  5HYW B;  4AJY C;  3OGM A;  3HVE B;  4UIJ A;  2I2R A;  3LUT B;  5DAD A;  4W9K B;  3GA1 A;  2A79 B;  5A15 A;  4B95 B;  2IF5 A;  1LQB B;  1NEX A;  4JTA B;  3ZKJ B;  2OVR A;  1EOE A;  3ZRC B;  1LDK D;  4CXT A;  3HTM A;  4W9H B;  3FKC A;  4W9D B;  1T1D A;  2OVQ A;  4U2M A;  2Q81 A;  3OHU A;  4W9J B;  5H7G A;  3C6P A;  4B9K B;  3V7D A;  4HXI A;  4JTC B;  4U77 A;  4B9K E;  3I3N A;  4W9F B;  5DAF A;  2YY9 A;  2R9R B;  1R29 A; 
#chains in the Genus database with same CATH topology
 2ASS A;  2VKP A;  1R2B A;  3M4T A;  1VCB B;  4UYI A;  1FQV B;  2P1O A;  3C6O A;  3M5B A;  2IZV C;  1QDW A;  2FNJ C;  3B84 A;  1EOF A;  3E4U A;  3LNM B;  5EUP A;  1DSX A;  3LBZ A;  5H7H A;  4W9I B;  3ZUN B;  4BKS B;  3WSO B;  1NN7 A;  4U2N A;  5FTA A;  4J8Z A;  3HU6 A;  4I6J C;  4AP2 A;  5HZG C;  4JTD B;  1EOD A;  1BUO A;  2P1Q A;  4BKT B;  3KVT A;  2AST A;  2NN2 A;  2MA9 C;  4W9L B;  4CP3 A;  3OGK A;  2PPI A;  3BIM A;  1QDV A;  4ZOU A;  3DRX A;  2P1M A;  4W9E B;  4N9F 5;  2JZ3 C;  2P1N A;  1R28 A;  2Z8H A;  3L2O A;  4AWJ B;  5LLI B;  4W9H H;  4CXJ A;  4EOZ A;  3ZTD B;  1S1G A;  1LM8 C;  3OGL A;  5BXH A;  2VPK A;  1FS1 B;  3M8V A;  2OVP A;  2P1P A;  2E32 B;  4BGC A;  2C9W C;  5IBK A;  1A68 A;  2IHC A;  4WQO C;  3HQI A;  1P22 B;  3ZTC B;  2NZ0 B;  1EXB E;  4YY8 A;  4APF A;  4W9G B;  5BXD A;  4W9C B;  3HVE A;  1CS3 A;  3OHV A;  3DCG B;  5BO4 C;  5BXB A;  2E31 B;  5JH5 B;  3DRZ A;  1HV2 A;  4CXI A;  4JGH C;  3C6N A;  1FS2 B;  3M52 A;  3MKS A;  3ZRF B;  4CRH A;  5A6R A;  3ZNG B;  5HYW B;  3DRY A;  4AJY C;  3OGM A;  3HVE B;  4UIJ A;  2I2R A;  3LUT B;  5DAD A;  4W9K B;  3GA1 A;  2A79 B;  5A15 A;  4B95 B;  2IF5 A;  1LQB B;  1NEX A;  4JTA B;  3ZKJ B;  2OVR A;  1EOE A;  3ZRC B;  1LDK D;  4CXT A;  3HTM A;  4W9H B;  3FKC A;  4W9D B;  1T1D A;  2OVQ A;  4U2M A;  2Q81 A;  3OHU A;  4W9J B;  5H7G A;  3C6P A;  4ZGC A;  4B9K B;  3V7D A;  4HXI A;  4JTC B;  4U77 A;  4B9K E;  3I3N A;  4W9F B;  5DAF A;  2YY9 A;  2R9R B;  1R29 A; 
#chains in the Genus database with same CATH homology
 2ASS A;  2VKP A;  1R2B A;  3M4T A;  1VCB B;  4UYI A;  1FQV B;  2P1O A;  3C6O A;  3M5B A;  2IZV C;  1QDW A;  2FNJ C;  3B84 A;  1EOF A;  3E4U A;  3LNM B;  5EUP A;  1DSX A;  3LBZ A;  5H7H A;  4W9I B;  3ZUN B;  4BKS B;  3WSO B;  1NN7 A;  4U2N A;  5FTA A;  4J8Z A;  3HU6 A;  4I6J C;  4AP2 A;  5HZG C;  4JTD B;  1EOD A;  1BUO A;  2P1Q A;  4BKT B;  3KVT A;  2AST A;  2NN2 A;  2MA9 C;  4W9L B;  4CP3 A;  3OGK A;  2PPI A;  3BIM A;  1QDV A;  4ZOU A;  3DRX A;  2P1M A;  4W9E B;  4N9F 5;  2JZ3 C;  2P1N A;  1R28 A;  2Z8H A;  3L2O A;  4AWJ B;  5LLI B;  4W9H H;  4CXJ A;  4EOZ A;  3ZTD B;  1S1G A;  1LM8 C;  3OGL A;  5BXH A;  2VPK A;  1FS1 B;  3M8V A;  2OVP A;  2P1P A;  2E32 B;  4BGC A;  2C9W C;  5IBK A;  1A68 A;  2IHC A;  4WQO C;  3HQI A;  1P22 B;  3ZTC B;  2NZ0 B;  1EXB E;  4YY8 A;  4APF A;  4W9G B;  5BXD A;  4W9C B;  3HVE A;  1CS3 A;  3OHV A;  3DCG B;  5BO4 C;  5BXB A;  2E31 B;  5JH5 B;  3DRZ A;  1HV2 A;  4CXI A;  4JGH C;  3C6N A;  1FS2 B;  3M52 A;  3MKS A;  3ZRF B;  4CRH A;  5A6R A;  3ZNG B;  5HYW B;  3DRY A;  4AJY C;  3OGM A;  3HVE B;  4UIJ A;  2I2R A;  3LUT B;  5DAD A;  4W9K B;  3GA1 A;  2A79 B;  5A15 A;  4B95 B;  2IF5 A;  1LQB B;  1NEX A;  4JTA B;  3ZKJ B;  2OVR A;  1EOE A;  3ZRC B;  1LDK D;  4CXT A;  3HTM A;  4W9H B;  3FKC A;  4W9D B;  1T1D A;  2OVQ A;  4U2M A;  2Q81 A;  3OHU A;  4W9J B;  5H7G A;  3C6P A;  4ZGC A;  4B9K B;  3V7D A;  4HXI A;  4JTC B;  4U77 A;  4B9K E;  3I3N A;  4W9F B;  5DAF A;  2YY9 A;  2R9R B;  1R29 A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.