The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
20
|
sequence length |
96
|
structure length |
96
|
Chain Sequence |
MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The SOCS box domain of SOCS3: structure and interaction with the elonginBC-cullin5 ubiquitin ligase
pubmed doi rcsb |
| molecule keywords |
Suppressor of cytokine signaling 3
|
| molecule tags |
Transcription inhibitor/transcription
|
| source organism |
Mus musculus
|
| total genus |
20
|
| structure length |
96
|
| sequence length |
96
|
| ec nomenclature | |
| pdb deposition date | 2007-12-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF03931 | Skp1_POZ | Skp1 family, tetramerisation domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1; Chain A | Potassium Channel Kv1.1; Chain A |
#chains in the Genus database with same CATH superfamily 5BXH A; 1A68 A; 1R2B A; 4JTA B; 4W9H H; 5DAF A; 3HVE B; 3HTM A; 3M4T A; 4APF A; 1R28 A; 5HZG C; 2NN2 A; 2P1N A; 4JGH C; 4U77 A; 2C9W C; 1VCB B; 2IHC A; 4W9J B; 3OGK A; 4AJY C; 1FQV B; 3E4U A; 4CXI A; 3L2O A; 1R29 A; 3ZUN B; 2OVP A; 2P1Q A; 3M52 A; 3DRZ A; 2YY9 A; 3WSO B; 3OGM A; 4U2N A; 1EOD A; 3ZRF B; 2OVQ A; 4BKT B; 2A79 B; 3C6N A; 1DSX A; 2R9R B; 4W9G B; 3OHU A; 1EOF A; 3C6O A; 5BXD A; 1P22 B; 2P1O A; 3HVE A; 3OHV A; 4B9K B; 4W9D B; 4W9C B; 4CP3 A; 1QDW A; 1BUO A; 2IF5 A; 5H7G A; 2VKP A; 3KVT A; 5HYW B; 2MA9 C; 4UIJ A; 3HQI A; 1NEX A; 4JTD B; 5A6R A; 4W9I B; 5A15 A; 4CXJ A; 1CS3 A; 2AST A; 1FS1 B; 2ASS A; 4W9L B; 1HV2 A; 1LM8 C; 3LNM B; 4JTC B; 4CRH A; 2VPK A; 3M8V A; 5H7H A; 1LDK D; 4W9F B; 1NN7 A; 2PPI A; 3ZRC B; 4W9H B; 5FTA A; 3I3N A; 3GA1 A; 4HXI A; 3V7D A; 5IBK A; 4J8Z A; 3LBZ A; 4N9F 5; 3OGL A; 4W9K B; 4WQO C; 1EXB E; 1QDV A; 4CXT A; 2IZV C; 4U2M A; 3BIM A; 5DAD A; 4BKS B; 3ZTD B; 5BO4 C; 1T1D A; 3DCG B; 1LQB B; 3FKC A; 3LUT B; 1EOE A; 1FS2 B; 2FNJ C; 2P1P A; 3M5B A; 4I6J C; 5JH5 B; 4W9E B; 4UYI A; 3ZKJ B; 4AP2 A; 4B9K E; 2P1M A; 4ZOU A; 2E31 B; 4B95 B; 2JZ3 C; 3ZNG B; 5LLI B; 4EOZ A; 4BGC A; 2Q81 A; 3C6P A; 4AWJ B; 5EUP A; 2I2R A; 2E32 B; 3HU6 A; 3MKS A; 1S1G A; 2OVR A; 2NZ0 B; 2Z8H A; 3B84 A; 3ZTC B; 5BXB A; #chains in the Genus database with same CATH topology 5BXH A; 1A68 A; 1R2B A; 4JTA B; 4W9H H; 5DAF A; 3HVE B; 3HTM A; 3M4T A; 4APF A; 1R28 A; 5HZG C; 2NN2 A; 2P1N A; 4JGH C; 4U77 A; 2C9W C; 1VCB B; 2IHC A; 4W9J B; 3OGK A; 4AJY C; 1FQV B; 3E4U A; 4CXI A; 3L2O A; 1R29 A; 3ZUN B; 2OVP A; 2P1Q A; 3M52 A; 3DRZ A; 2YY9 A; 3WSO B; 3OGM A; 4ZGC A; 4U2N A; 1EOD A; 3ZRF B; 2OVQ A; 4BKT B; 2A79 B; 3C6N A; 1DSX A; 2R9R B; 4W9G B; 3OHU A; 1EOF A; 3C6O A; 5BXD A; 1P22 B; 2P1O A; 3HVE A; 3OHV A; 4B9K B; 4W9D B; 4W9C B; 4CP3 A; 3DRY A; 1QDW A; 1BUO A; 2IF5 A; 5H7G A; 2VKP A; 3KVT A; 5HYW B; 2MA9 C; 4UIJ A; 3DRX A; 3HQI A; 1NEX A; 4JTD B; 5A6R A; 4W9I B; 5A15 A; 4CXJ A; 1CS3 A; 2AST A; 1FS1 B; 2ASS A; 4W9L B; 1HV2 A; 1LM8 C; 3LNM B; 4JTC B; 4CRH A; 2VPK A; 3M8V A; 5H7H A; 1LDK D; 4W9F B; 1NN7 A; 2PPI A; 3ZRC B; 4W9H B; 5FTA A; 3I3N A; 3GA1 A; 4YY8 A; 4HXI A; 3V7D A; 5IBK A; 4J8Z A; 3LBZ A; 4N9F 5; 3OGL A; 4W9K B; 4WQO C; 1EXB E; 1QDV A; 4CXT A; 2IZV C; 4U2M A; 3BIM A; 5DAD A; 4BKS B; 3ZTD B; 5BO4 C; 1T1D A; 3DCG B; 1LQB B; 3FKC A; 3LUT B; 1EOE A; 1FS2 B; 2FNJ C; 2P1P A; 3M5B A; 4I6J C; 5JH5 B; 4W9E B; 4UYI A; 3ZKJ B; 4AP2 A; 4B9K E; 2P1M A; 4ZOU A; 2E31 B; 4B95 B; 2JZ3 C; 3ZNG B; 5LLI B; 4EOZ A; 4BGC A; 2Q81 A; 3C6P A; 4AWJ B; 5EUP A; 2I2R A; 2E32 B; 3HU6 A; 3MKS A; 1S1G A; 2OVR A; 2NZ0 B; 2Z8H A; 3B84 A; 3ZTC B; 5BXB A; #chains in the Genus database with same CATH homology 5BXH A; 1A68 A; 1R2B A; 4JTA B; 4W9H H; 5DAF A; 3HVE B; 3HTM A; 3M4T A; 4APF A; 1R28 A; 5HZG C; 2NN2 A; 2P1N A; 4JGH C; 4U77 A; 2C9W C; 1VCB B; 2IHC A; 4W9J B; 3OGK A; 4AJY C; 1FQV B; 3E4U A; 4CXI A; 3L2O A; 1R29 A; 3ZUN B; 2OVP A; 2P1Q A; 3M52 A; 3DRZ A; 2YY9 A; 3WSO B; 3OGM A; 4ZGC A; 4U2N A; 1EOD A; 3ZRF B; 2OVQ A; 4BKT B; 2A79 B; 3C6N A; 1DSX A; 2R9R B; 4W9G B; 3OHU A; 1EOF A; 3C6O A; 5BXD A; 1P22 B; 2P1O A; 3HVE A; 3OHV A; 4B9K B; 4W9D B; 4W9C B; 4CP3 A; 3DRY A; 1QDW A; 1BUO A; 2IF5 A; 5H7G A; 2VKP A; 3KVT A; 5HYW B; 2MA9 C; 4UIJ A; 3DRX A; 3HQI A; 1NEX A; 4JTD B; 5A6R A; 4W9I B; 5A15 A; 4CXJ A; 1CS3 A; 2AST A; 1FS1 B; 2ASS A; 4W9L B; 1HV2 A; 1LM8 C; 3LNM B; 4JTC B; 4CRH A; 2VPK A; 3M8V A; 5H7H A; 1LDK D; 4W9F B; 1NN7 A; 2PPI A; 3ZRC B; 4W9H B; 5FTA A; 3I3N A; 3GA1 A; 4YY8 A; 4HXI A; 3V7D A; 5IBK A; 4J8Z A; 3LBZ A; 4N9F 5; 3OGL A; 4W9K B; 4WQO C; 1EXB E; 1QDV A; 4CXT A; 2IZV C; 4U2M A; 3BIM A; 5DAD A; 4BKS B; 3ZTD B; 5BO4 C; 1T1D A; 3DCG B; 1LQB B; 3FKC A; 3LUT B; 1EOE A; 1FS2 B; 2FNJ C; 2P1P A; 3M5B A; 4I6J C; 5JH5 B; 4W9E B; 4UYI A; 3ZKJ B; 4AP2 A; 4B9K E; 2P1M A; 4ZOU A; 2E31 B; 4B95 B; 2JZ3 C; 3ZNG B; 5LLI B; 4EOZ A; 4BGC A; 2Q81 A; 3C6P A; 4AWJ B; 5EUP A; 2I2R A; 2E32 B; 3HU6 A; 3MKS A; 1S1G A; 2OVR A; 2NZ0 B; 2Z8H A; 3B84 A; 3ZTC B; 5BXB A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
