2K0ZA

Solution nmr structure of protein hp1203 from helicobacter pylori 26695. northeast structural genomics consortium (nesg) target pt1/ontario center for structural proteomics target hp1203
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
110
structure length
110
Chain Sequence
MLEDYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTCDKKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR structure of protein hp1203 from Helicobacter pylori 26695. Northeast Structural Genomics Consortium (NESG) target PT1/Ontario Center for Structural Proteomics target hp1203.
rcsb
molecule tags Structural genomics, unknown function
source organism Helicobacter pylori
molecule keywords Uncharacterized protein hp1203
total genus 32
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2008-02-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2k0zA00
1E0CA 3FNJA 3OLHA 1UARA 1WV9A 2HHGA 3TG1B 1GMXA 2OUCA 3FS5A 4JGTA 1QB0A 5HBLA 3TG3A 1RHSA 1ORBA 1T3KA 3R2UA 1H4MX 3HWIA 2JTQA 1H4KX 2K0ZA 2MOIA 1WHBA 2DCQA 2EG4B 3P3AA 3GK5A 1TQ1A 2JTSA 3FOJA 2UZQA 3UTNX 3F4AA 3HIXA 3IPPA 5LAMA 4F67A 3NT6A 1CWTA 3ICTA 1YMKA 2J6PA 3G5JA 2KL3A 3TP9A 5LAOA 3IPOA 2FSXA 1RHDA 2WLRA 3ILMA 3OP3A 3D1PA 2JTRA 1YMDA 3O3WA 1VEEA 5HPAA 1OKGA 3K9RA 1CWSA 3I3UA 2MOLA 2IFVA 1C25A 3IWHA 1YT8A 2A2KA 1DP2A 3FLHA 1URHA 2VSWA 5HBOA 3ICSA 3I2VA 4OCGA 1QXNA 3NHVA 1HZMA 1YMLA 3ICRA 1BOHA 2EG4A 5HBQA 1BOIA 5HBPA 3NTDA 4WH9A 3AAXA 1YS0A 3HZUA 2MRMA 3NTAA 2WLXA 2GWFA 4WH7A 2ORAA 2IFDA 1CWRA 1YM9A 3AAYA 1GN0A 3MZZA 2EG3A
chains in the Genus database with same CATH superfamily
1E0CA 3FNJA 3OLHA 1UARA 1WV9A 2HHGA 3TG1B 1GMXA 2OUCA 3FS5A 4JGTA 1QB0A 5HBLA 3TG3A 1RHSA 1ORBA 1T3KA 3R2UA 1H4MX 3HWIA 2JTQA 1H4KX 2K0ZA 2MOIA 1WHBA 2DCQA 2EG4B 3P3AA 3GK5A 1TQ1A 2JTSA 3FOJA 2UZQA 3UTNX 3F4AA 3HIXA 3IPPA 2Q82A 5LAMA 4F67A 3NT6A 1CWTA 3ICTA 1YMKA 2J6PA 3G5JA 2KL3A 3TP9A 5LAOA 3IPOA 2FSXA 1RHDA 2WLRA 3ILMA 3OP3A 3D1PA 2JTRA 1YMDA 3O3WA 1VEEA 5HPAA 1OKGA 3K9RA 1CWSA 3I3UA 2MOLA 2IFVA 1C25A 3IWHA 1YT8A 2A2KA 1DP2A 3FLHA 1URHA 2VSWA 5HBOA 3ICSA 3I2VA 4OCGA 1QXNA 3NHVA 1HZMA 1YMLA 3ICRA 1BOHA 2EG4A 5HBQA 1BOIA 5HBPA 3NTDA 4WH9A 3AAXA 1YS0A 3HZUA 2MRMA 3NTAA 2WLXA 2GWFA 4WH7A 2ORAA 2IFDA 1CWRA 1YM9A 3AAYA 1GN0A 3MZZA 2EG3A
chains in the Genus database with same CATH topology
1E0CA 3FNJA 3OLHA 1UARA 1WV9A 2HHGA 3TG1B 1GMXA 2OUCA 3FS5A 4JGTA 1QB0A 5HBLA 3TG3A 1RHSA 1ORBA 1T3KA 3R2UA 1H4MX 3HWIA 2JTQA 1H4KX 2K0ZA 2MOIA 1WHBA 2DCQA 2EG4B 3P3AA 3GK5A 1TQ1A 2JTSA 3FOJA 2UZQA 3UTNX 3F4AA 3HIXA 3IPPA 5LAMA 4F67A 3NT6A 1CWTA 3ICTA 1YMKA 2J6PA 3G5JA 2KL3A 3TP9A 5LAOA 3IPOA 2FSXA 1RHDA 2WLRA 3ILMA 3OP3A 3D1PA 2JTRA 1YMDA 3O3WA 1VEEA 5HPAA 1OKGA 3K9RA 1CWSA 3I3UA 2MOLA 2IFVA 1C25A 3IWHA 1YT8A 2A2KA 1DP2A 3FLHA 1URHA 2VSWA 5HBOA 3ICSA 3I2VA 4OCGA 1QXNA 3NHVA 1HZMA 1YMLA 3ICRA 1BOHA 2EG4A 5HBQA 1BOIA 5HBPA 3NTDA 4WH9A 3AAXA 1YS0A 3HZUA 2MRMA 3NTAA 2WLXA 2GWFA 4WH7A 2ORAA 2IFDA 1CWRA 1YM9A 3AAYA 1GN0A 3MZZA 2EG3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E0C A;  3FNJ A;  3OLH A;  1UAR A;  1WV9 A;  2HHG A;  3TG1 B;  1GMX A;  2OUC A;  3FS5 A;  4JGT A;  1QB0 A;  5HBL A;  3TG3 A;  1RHS A;  1ORB A;  1T3K A;  3R2U A;  1H4M X;  3HWI A;  2JTQ A;  1H4K X;  2K0Z A;  2MOI A;  1WHB A;  2DCQ A;  2EG4 B;  3P3A A;  3GK5 A;  1TQ1 A;  2JTS A;  3FOJ A;  2UZQ A;  3UTN X;  3F4A A;  3HIX A;  3IPP A;  5LAM A;  4F67 A;  3NT6 A;  1CWT A;  3ICT A;  1YMK A;  2J6P A;  3G5J A;  2KL3 A;  3TP9 A;  5LAO A;  3IPO A;  2FSX A;  1RHD A;  2WLR A;  3ILM A;  3OP3 A;  3D1P A;  2JTR A;  1YMD A;  3O3W A;  1VEE A;  5HPA A;  1OKG A;  3K9R A;  1CWS A;  3I3U A;  2MOL A;  2IFV A;  1C25 A;  3IWH A;  1YT8 A;  2A2K A;  1DP2 A;  3FLH A;  1URH A;  2VSW A;  5HBO A;  3ICS A;  3I2V A;  4OCG A;  1QXN A;  3NHV A;  1HZM A;  1YML A;  3ICR A;  1BOH A;  2EG4 A;  5HBQ A;  1BOI A;  5HBP A;  3NTD A;  4WH9 A;  3AAX A;  1YS0 A;  3HZU A;  2MRM A;  3NTA A;  2WLX A;  2GWF A;  4WH7 A;  2ORA A;  2IFD A;  1CWR A;  1YM9 A;  3AAY A;  1GN0 A;  3MZZ A;  2EG3 A; 
#chains in the Genus database with same CATH topology
 1E0C A;  3FNJ A;  3OLH A;  1UAR A;  1WV9 A;  2HHG A;  3TG1 B;  1GMX A;  2OUC A;  3FS5 A;  4JGT A;  1QB0 A;  5HBL A;  3TG3 A;  1RHS A;  1ORB A;  1T3K A;  3R2U A;  1H4M X;  3HWI A;  2JTQ A;  1H4K X;  2K0Z A;  2MOI A;  1WHB A;  2DCQ A;  2EG4 B;  3P3A A;  3GK5 A;  1TQ1 A;  2JTS A;  3FOJ A;  2UZQ A;  3UTN X;  3F4A A;  3HIX A;  3IPP A;  2Q82 A;  5LAM A;  4F67 A;  3NT6 A;  1CWT A;  3ICT A;  1YMK A;  2J6P A;  3G5J A;  2KL3 A;  3TP9 A;  5LAO A;  3IPO A;  2FSX A;  1RHD A;  2WLR A;  3ILM A;  3OP3 A;  3D1P A;  2JTR A;  1YMD A;  3O3W A;  1VEE A;  5HPA A;  1OKG A;  3K9R A;  1CWS A;  3I3U A;  2MOL A;  2IFV A;  1C25 A;  3IWH A;  1YT8 A;  2A2K A;  1DP2 A;  3FLH A;  1URH A;  2VSW A;  5HBO A;  3ICS A;  3I2V A;  4OCG A;  1QXN A;  3NHV A;  1HZM A;  1YML A;  3ICR A;  1BOH A;  2EG4 A;  5HBQ A;  1BOI A;  5HBP A;  3NTD A;  4WH9 A;  3AAX A;  1YS0 A;  3HZU A;  2MRM A;  3NTA A;  2WLX A;  2GWF A;  4WH7 A;  2ORA A;  2IFD A;  1CWR A;  1YM9 A;  3AAY A;  1GN0 A;  3MZZ A;  2EG3 A; 
#chains in the Genus database with same CATH homology
 1E0C A;  3FNJ A;  3OLH A;  1UAR A;  1WV9 A;  2HHG A;  3TG1 B;  1GMX A;  2OUC A;  3FS5 A;  4JGT A;  1QB0 A;  5HBL A;  3TG3 A;  1RHS A;  1ORB A;  1T3K A;  3R2U A;  1H4M X;  3HWI A;  2JTQ A;  1H4K X;  2K0Z A;  2MOI A;  1WHB A;  2DCQ A;  2EG4 B;  3P3A A;  3GK5 A;  1TQ1 A;  2JTS A;  3FOJ A;  2UZQ A;  3UTN X;  3F4A A;  3HIX A;  3IPP A;  5LAM A;  4F67 A;  3NT6 A;  1CWT A;  3ICT A;  1YMK A;  2J6P A;  3G5J A;  2KL3 A;  3TP9 A;  5LAO A;  3IPO A;  2FSX A;  1RHD A;  2WLR A;  3ILM A;  3OP3 A;  3D1P A;  2JTR A;  1YMD A;  3O3W A;  1VEE A;  5HPA A;  1OKG A;  3K9R A;  1CWS A;  3I3U A;  2MOL A;  2IFV A;  1C25 A;  3IWH A;  1YT8 A;  2A2K A;  1DP2 A;  3FLH A;  1URH A;  2VSW A;  5HBO A;  3ICS A;  3I2V A;  4OCG A;  1QXN A;  3NHV A;  1HZM A;  1YML A;  3ICR A;  1BOH A;  2EG4 A;  5HBQ A;  1BOI A;  5HBP A;  3NTD A;  4WH9 A;  3AAX A;  1YS0 A;  3HZU A;  2MRM A;  3NTA A;  2WLX A;  2GWF A;  4WH7 A;  2ORA A;  2IFD A;  1CWR A;  1YM9 A;  3AAY A;  1GN0 A;  3MZZ A;  2EG3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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