2MRMA

Solution structure of the rhodanese domain of ygap from e. coli
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
107
structure length
107
Chain Sequence
MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKRAGLPVAVNK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Fast conformational exchange between the sulfur-free and persulfide-bound rhodanese domain of E. coli YgaP
pubmed doi rcsb
molecule tags Membrane protein
source organism Escherichia coli
molecule keywords Membrane protein
total genus 18
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2014-07-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2mrmA00
2ORAA 2JTRA 3F4AA 1H4MX 1URHA 5HBOA 2UZQA 3OP3A 4WH9A 3UTNX 3I3UA 1C25A 3O3WA 3IPOA 1TQ1A 5HPAA 3NTAA 3MZZA 1OKGA 3TG3A 1ORBA 5LAOA 3IPPA 2VSWA 3IWHA 3NHVA 1RHSA 2IFDA 2MRMA 1YT8A 2GWFA 2K0ZA 2KL3A 2WLRA 3ILMA 3I2VA 1H4KX 2JTQA 3NT6A 3TP9A 4JGTA 3G5JA 1BOHA 2MOLA 3HZUA 2WLXA 5HBQA 3HIXA 3GK5A 4F67A 1YMKA 3FNJA 3ICTA 3ICSA 1E0CA 1HZMA 1RHDA 1QB0A 2FSXA 1GMXA 2MOIA 3D1PA 1CWTA 3ICRA 1CWRA 2EG4B 3P3AA 3FS5A 1YMDA 5HBPA 2IFVA 1T3KA 1YS0A 2HHGA 1BOIA 2OUCA 1WHBA 1YMLA 2DCQA 3HWIA 5HBLA 3R2UA 1YM9A 4OCGA 2JTSA 1WV9A 3K9RA 5LAMA 1CWSA 3FOJA 2A2KA 2J6PA 1VEEA 1QXNA 1UARA 1DP2A 1GN0A 3FLHA 3TG1B 2EG3A 4WH7A 2EG4A 3AAYA 3NTDA 3OLHA 3AAXA
chains in the Genus database with same CATH superfamily
2ORAA 2JTRA 3F4AA 1H4MX 1URHA 5HBOA 2UZQA 3OP3A 4WH9A 3UTNX 3I3UA 1C25A 3O3WA 3IPOA 1TQ1A 5HPAA 3NTAA 3MZZA 1OKGA 3TG3A 1ORBA 5LAOA 3IPPA 2VSWA 3IWHA 3NHVA 1RHSA 2IFDA 2MRMA 1YT8A 2GWFA 2K0ZA 2KL3A 2WLRA 2Q82A 3ILMA 3I2VA 1H4KX 2JTQA 3NT6A 3TP9A 4JGTA 3G5JA 1BOHA 2MOLA 3HZUA 2WLXA 5HBQA 3HIXA 3GK5A 4F67A 1YMKA 3FNJA 3ICTA 3ICSA 1E0CA 1HZMA 1RHDA 1QB0A 2FSXA 1GMXA 2MOIA 3D1PA 1CWTA 3ICRA 1CWRA 2EG4B 3P3AA 3FS5A 1YMDA 5HBPA 2IFVA 1T3KA 1YS0A 2HHGA 1BOIA 2OUCA 1WHBA 1YMLA 2DCQA 3HWIA 5HBLA 3R2UA 1YM9A 4OCGA 2JTSA 1WV9A 3K9RA 5LAMA 1CWSA 3FOJA 2A2KA 2J6PA 1VEEA 1QXNA 1UARA 1DP2A 1GN0A 3FLHA 3TG1B 2EG3A 4WH7A 2EG4A 3AAYA 3NTDA 3OLHA 3AAXA
chains in the Genus database with same CATH topology
2ORAA 2JTRA 3F4AA 1H4MX 1URHA 5HBOA 2UZQA 3OP3A 4WH9A 3UTNX 3I3UA 1C25A 3O3WA 3IPOA 1TQ1A 5HPAA 3NTAA 3MZZA 1OKGA 3TG3A 1ORBA 5LAOA 3IPPA 2VSWA 3IWHA 3NHVA 1RHSA 2IFDA 2MRMA 1YT8A 2GWFA 2K0ZA 2KL3A 2WLRA 3ILMA 3I2VA 1H4KX 2JTQA 3NT6A 3TP9A 4JGTA 3G5JA 1BOHA 2MOLA 3HZUA 2WLXA 5HBQA 3HIXA 3GK5A 4F67A 1YMKA 3FNJA 3ICTA 3ICSA 1E0CA 1HZMA 1RHDA 1QB0A 2FSXA 1GMXA 2MOIA 3D1PA 1CWTA 3ICRA 1CWRA 2EG4B 3P3AA 3FS5A 1YMDA 5HBPA 2IFVA 1T3KA 1YS0A 2HHGA 1BOIA 2OUCA 1WHBA 1YMLA 2DCQA 3HWIA 5HBLA 3R2UA 1YM9A 4OCGA 2JTSA 1WV9A 3K9RA 5LAMA 1CWSA 3FOJA 2A2KA 2J6PA 1VEEA 1QXNA 1UARA 1DP2A 1GN0A 3FLHA 3TG1B 2EG3A 4WH7A 2EG4A 3AAYA 3NTDA 3OLHA 3AAXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ORA A;  2JTR A;  3F4A A;  1H4M X;  1URH A;  5HBO A;  2UZQ A;  3OP3 A;  4WH9 A;  3UTN X;  3I3U A;  1C25 A;  3O3W A;  3IPO A;  1TQ1 A;  5HPA A;  3NTA A;  3MZZ A;  1OKG A;  3TG3 A;  1ORB A;  5LAO A;  3IPP A;  2VSW A;  3IWH A;  3NHV A;  1RHS A;  2IFD A;  2MRM A;  1YT8 A;  2GWF A;  2K0Z A;  2KL3 A;  2WLR A;  3ILM A;  3I2V A;  1H4K X;  2JTQ A;  3NT6 A;  3TP9 A;  4JGT A;  3G5J A;  1BOH A;  2MOL A;  3HZU A;  2WLX A;  5HBQ A;  3HIX A;  3GK5 A;  4F67 A;  1YMK A;  3FNJ A;  3ICT A;  3ICS A;  1E0C A;  1HZM A;  1RHD A;  1QB0 A;  2FSX A;  1GMX A;  2MOI A;  3D1P A;  1CWT A;  3ICR A;  1CWR A;  2EG4 B;  3P3A A;  3FS5 A;  1YMD A;  5HBP A;  2IFV A;  1T3K A;  1YS0 A;  2HHG A;  1BOI A;  2OUC A;  1WHB A;  1YML A;  2DCQ A;  3HWI A;  5HBL A;  3R2U A;  1YM9 A;  4OCG A;  2JTS A;  1WV9 A;  3K9R A;  5LAM A;  1CWS A;  3FOJ A;  2A2K A;  2J6P A;  1VEE A;  1QXN A;  1UAR A;  1DP2 A;  1GN0 A;  3FLH A;  3TG1 B;  2EG3 A;  4WH7 A;  2EG4 A;  3AAY A;  3NTD A;  3OLH A;  3AAX A; 
#chains in the Genus database with same CATH topology
 2ORA A;  2JTR A;  3F4A A;  1H4M X;  1URH A;  5HBO A;  2UZQ A;  3OP3 A;  4WH9 A;  3UTN X;  3I3U A;  1C25 A;  3O3W A;  3IPO A;  1TQ1 A;  5HPA A;  3NTA A;  3MZZ A;  1OKG A;  3TG3 A;  1ORB A;  5LAO A;  3IPP A;  2VSW A;  3IWH A;  3NHV A;  1RHS A;  2IFD A;  2MRM A;  1YT8 A;  2GWF A;  2K0Z A;  2KL3 A;  2WLR A;  2Q82 A;  3ILM A;  3I2V A;  1H4K X;  2JTQ A;  3NT6 A;  3TP9 A;  4JGT A;  3G5J A;  1BOH A;  2MOL A;  3HZU A;  2WLX A;  5HBQ A;  3HIX A;  3GK5 A;  4F67 A;  1YMK A;  3FNJ A;  3ICT A;  3ICS A;  1E0C A;  1HZM A;  1RHD A;  1QB0 A;  2FSX A;  1GMX A;  2MOI A;  3D1P A;  1CWT A;  3ICR A;  1CWR A;  2EG4 B;  3P3A A;  3FS5 A;  1YMD A;  5HBP A;  2IFV A;  1T3K A;  1YS0 A;  2HHG A;  1BOI A;  2OUC A;  1WHB A;  1YML A;  2DCQ A;  3HWI A;  5HBL A;  3R2U A;  1YM9 A;  4OCG A;  2JTS A;  1WV9 A;  3K9R A;  5LAM A;  1CWS A;  3FOJ A;  2A2K A;  2J6P A;  1VEE A;  1QXN A;  1UAR A;  1DP2 A;  1GN0 A;  3FLH A;  3TG1 B;  2EG3 A;  4WH7 A;  2EG4 A;  3AAY A;  3NTD A;  3OLH A;  3AAX A; 
#chains in the Genus database with same CATH homology
 2ORA A;  2JTR A;  3F4A A;  1H4M X;  1URH A;  5HBO A;  2UZQ A;  3OP3 A;  4WH9 A;  3UTN X;  3I3U A;  1C25 A;  3O3W A;  3IPO A;  1TQ1 A;  5HPA A;  3NTA A;  3MZZ A;  1OKG A;  3TG3 A;  1ORB A;  5LAO A;  3IPP A;  2VSW A;  3IWH A;  3NHV A;  1RHS A;  2IFD A;  2MRM A;  1YT8 A;  2GWF A;  2K0Z A;  2KL3 A;  2WLR A;  3ILM A;  3I2V A;  1H4K X;  2JTQ A;  3NT6 A;  3TP9 A;  4JGT A;  3G5J A;  1BOH A;  2MOL A;  3HZU A;  2WLX A;  5HBQ A;  3HIX A;  3GK5 A;  4F67 A;  1YMK A;  3FNJ A;  3ICT A;  3ICS A;  1E0C A;  1HZM A;  1RHD A;  1QB0 A;  2FSX A;  1GMX A;  2MOI A;  3D1P A;  1CWT A;  3ICR A;  1CWR A;  2EG4 B;  3P3A A;  3FS5 A;  1YMD A;  5HBP A;  2IFV A;  1T3K A;  1YS0 A;  2HHG A;  1BOI A;  2OUC A;  1WHB A;  1YML A;  2DCQ A;  3HWI A;  5HBL A;  3R2U A;  1YM9 A;  4OCG A;  2JTS A;  1WV9 A;  3K9R A;  5LAM A;  1CWS A;  3FOJ A;  2A2K A;  2J6P A;  1VEE A;  1QXN A;  1UAR A;  1DP2 A;  1GN0 A;  3FLH A;  3TG1 B;  2EG3 A;  4WH7 A;  2EG4 A;  3AAY A;  3NTD A;  3OLH A;  3AAX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...