2NN2 | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	123
structure length	117
Chain Sequence	GPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 117 atoms

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117 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Crystal structure of the BTB domain from the LRF/ZBTB7 transcriptional regulator. pubmed doi rcsb
molecule keywords	Zinc finger and BTB domain-containing protein 7A
total genus	35
structure length	117
sequence length	123
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-10-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	2nn2A00

1VCBB 3OHUA 3HVEB 4ZOUA 4W9DB 4U2NA 2R9RB 4UIJA 4AWJB 1S1GA 3LUTB 4AJYC 5BXBA 4W9KB 4W9IB 4JTAB 1EOFA 1CS3A 3MKSA 1DSXA 3BIMA 4JGHC 5EUPA 5A15A 1EXBE 2IF5A 5HZGC 4W9EB 5A6RA 5H7HA 4J8ZA 3M5BA 1QDVA 3M52A 4N9F5 1LQBB 3KVTA 4WQOC 2OVQA 3OGMA 1R28A 1BUOA 2E32B 2IZVC 4CXTA 3OGLA 1P22B 1FS2B 4U77A 1LM8C 4W9JB 1EODA 3B84A 3HTMA 3HVEA 5JH5B 1T1DA 2MA9C 2PPIA 4W9FB 4W9GB 4W9CB 3V7DA 3ZTDB 3OGKA 2Q81A 4AP2A 3DCGB 4I6JC 4UYIA 3C6PA 4HXIA 5FTAA 4BKSB 3FKCA 4BKTB 5DAFA 2ASTA 2NZ0B 3ZRFB 1QDWA 2NN2A 4W9HB 4B9KE 2VKPA 5HYWB 2YY9A 3HQIA 2P1OA 5IBKA 4CXJA 2FNJC 3WSOB 2ASSA 4APFA 3ZKJB 4CRHA 1LDKD 3L2OA 3M4TA 1EOEA 1FS1B 2E31B 3DRZA 4W9HH 2OVPA 4JTDB 1NN7A 1FQVB 2P1MA 3M8VA 2P1QA 1HV2A 3HU6A 2C9WC 3ZUNB 4JTCB 3ZRCB 3LBZA 2P1NA 2Z8HA 3OHVA 5BXHA 4B95B 1A68A 2A79B 4B9KB 3GA1A 5H7GA 2JZ3C 3C6OA 1R29A 5BXDA 3LNMB 4CXIA 1R2BA 3ZNGB 3I3NA 2I2RA 2VPKA 5DADA 4CP3A 2OVRA 4W9LB 2IHCA 3ZTCB 3C6NA 3E4UA 4BGCA 5BO4C 2P1PA 1NEXA 4U2MA 4EOZA 5LLIB
chains in the Genus database with same CATH superfamily

3DRYA 1VCBB 3OHUA 3HVEB 4ZOUA 4W9DB 4U2NA 2R9RB 4UIJA 4AWJB 1S1GA 3LUTB 4AJYC 5BXBA 4W9KB 4W9IB 4JTAB 1EOFA 1CS3A 3MKSA 1DSXA 3BIMA 4JGHC 5EUPA 3DRXA 5A15A 1EXBE 2IF5A 5HZGC 4W9EB 5A6RA 5H7HA 4J8ZA 3M5BA 1QDVA 3M52A 4N9F5 1LQBB 3KVTA 4WQOC 2OVQA 3OGMA 1R28A 1BUOA 2E32B 2IZVC 4CXTA 3OGLA 1P22B 1FS2B 4YY8A 4U77A 1LM8C 4W9JB 1EODA 3B84A 3HTMA 3HVEA 5JH5B 1T1DA 2MA9C 2PPIA 4W9FB 4W9GB 4W9CB 3V7DA 3ZTDB 3OGKA 2Q81A 4AP2A 3DCGB 4I6JC 4UYIA 3C6PA 4HXIA 5FTAA 4BKSB 3FKCA 4BKTB 5DAFA 2ASTA 2NZ0B 3ZRFB 1QDWA 2NN2A 4W9HB 4B9KE 2VKPA 5HYWB 2YY9A 3HQIA 2P1OA 5IBKA 4CXJA 2FNJC 3WSOB 2ASSA 4APFA 3ZKJB 4CRHA 1LDKD 3L2OA 3M4TA 1EOEA 1FS1B 2E31B 3DRZA 4W9HH 2OVPA 4JTDB 1NN7A 1FQVB 2P1MA 3M8VA 2P1QA 1HV2A 3HU6A 2C9WC 3ZUNB 4JTCB 3ZRCB 3LBZA 2P1NA 2Z8HA 3OHVA 4ZGCA 5BXHA 4B95B 1A68A 2A79B 4B9KB 3GA1A 5H7GA 2JZ3C 3C6OA 1R29A 5BXDA 3LNMB 4CXIA 1R2BA 3ZNGB 3I3NA 2I2RA 2VPKA 5DADA 4CP3A 2OVRA 4W9LB 2IHCA 3ZTCB 3C6NA 3E4UA 4BGCA 5BO4C 2P1PA 1NEXA 4U2MA 4EOZA 5LLIB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1VCB B;  3OHU A;  3HVE B;  4ZOU A;  4W9D B;  4U2N A;  2R9R B;  4UIJ A;  4AWJ B;  1S1G A;  3LUT B;  4AJY C;  5BXB A;  4W9K B;  4W9I B;  4JTA B;  1EOF A;  1CS3 A;  3MKS A;  1DSX A;  3BIM A;  4JGH C;  5EUP A;  5A15 A;  1EXB E;  2IF5 A;  5HZG C;  4W9E B;  5A6R A;  5H7H A;  4J8Z A;  3M5B A;  1QDV A;  3M52 A;  4N9F 5;  1LQB B;  3KVT A;  4WQO C;  2OVQ A;  3OGM A;  1R28 A;  1BUO A;  2E32 B;  2IZV C;  4CXT A;  3OGL A;  1P22 B;  1FS2 B;  4U77 A;  1LM8 C;  4W9J B;  1EOD A;  3B84 A;  3HTM A;  3HVE A;  5JH5 B;  1T1D A;  2MA9 C;  2PPI A;  4W9F B;  4W9G B;  4W9C B;  3V7D A;  3ZTD B;  3OGK A;  2Q81 A;  4AP2 A;  3DCG B;  4I6J C;  4UYI A;  3C6P A;  4HXI A;  5FTA A;  4BKS B;  3FKC A;  4BKT B;  5DAF A;  2AST A;  2NZ0 B;  3ZRF B;  1QDW A;  2NN2 A;  4W9H B;  4B9K E;  2VKP A;  5HYW B;  2YY9 A;  3HQI A;  2P1O A;  5IBK A;  4CXJ A;  2FNJ C;  3WSO B;  2ASS A;  4APF A;  3ZKJ B;  4CRH A;  1LDK D;  3L2O A;  3M4T A;  1EOE A;  1FS1 B;  2E31 B;  3DRZ A;  4W9H H;  2OVP A;  4JTD B;  1NN7 A;  1FQV B;  2P1M A;  3M8V A;  2P1Q A;  1HV2 A;  3HU6 A;  2C9W C;  3ZUN B;  4JTC B;  3ZRC B;  3LBZ A;  2P1N A;  2Z8H A;  3OHV A;  5BXH A;  4B95 B;  1A68 A;  2A79 B;  4B9K B;  3GA1 A;  5H7G A;  2JZ3 C;  3C6O A;  1R29 A;  5BXD A;  3LNM B;  4CXI A;  1R2B A;  3ZNG B;  3I3N A;  2I2R A;  2VPK A;  5DAD A;  4CP3 A;  2OVR A;  4W9L B;  2IHC A;  3ZTC B;  3C6N A;  3E4U A;  4BGC A;  5BO4 C;  2P1P A;  1NEX A;  4U2M A;  4EOZ A;  5LLI B; 
#chains in the Genus database with same CATH topology
 3DRY A;  1VCB B;  3OHU A;  3HVE B;  4ZOU A;  4W9D B;  4U2N A;  2R9R B;  4UIJ A;  4AWJ B;  1S1G A;  3LUT B;  4AJY C;  5BXB A;  4W9K B;  4W9I B;  4JTA B;  1EOF A;  1CS3 A;  3MKS A;  1DSX A;  3BIM A;  4JGH C;  5EUP A;  3DRX A;  5A15 A;  1EXB E;  2IF5 A;  5HZG C;  4W9E B;  5A6R A;  5H7H A;  4J8Z A;  3M5B A;  1QDV A;  3M52 A;  4N9F 5;  1LQB B;  3KVT A;  4WQO C;  2OVQ A;  3OGM A;  1R28 A;  1BUO A;  2E32 B;  2IZV C;  4CXT A;  3OGL A;  1P22 B;  1FS2 B;  4YY8 A;  4U77 A;  1LM8 C;  4W9J B;  1EOD A;  3B84 A;  3HTM A;  3HVE A;  5JH5 B;  1T1D A;  2MA9 C;  2PPI A;  4W9F B;  4W9G B;  4W9C B;  3V7D A;  3ZTD B;  3OGK A;  2Q81 A;  4AP2 A;  3DCG B;  4I6J C;  4UYI A;  3C6P A;  4HXI A;  5FTA A;  4BKS B;  3FKC A;  4BKT B;  5DAF A;  2AST A;  2NZ0 B;  3ZRF B;  1QDW A;  2NN2 A;  4W9H B;  4B9K E;  2VKP A;  5HYW B;  2YY9 A;  3HQI A;  2P1O A;  5IBK A;  4CXJ A;  2FNJ C;  3WSO B;  2ASS A;  4APF A;  3ZKJ B;  4CRH A;  1LDK D;  3L2O A;  3M4T A;  1EOE A;  1FS1 B;  2E31 B;  3DRZ A;  4W9H H;  2OVP A;  4JTD B;  1NN7 A;  1FQV B;  2P1M A;  3M8V A;  2P1Q A;  1HV2 A;  3HU6 A;  2C9W C;  3ZUN B;  4JTC B;  3ZRC B;  3LBZ A;  2P1N A;  2Z8H A;  3OHV A;  4ZGC A;  5BXH A;  4B95 B;  1A68 A;  2A79 B;  4B9K B;  3GA1 A;  5H7G A;  2JZ3 C;  3C6O A;  1R29 A;  5BXD A;  3LNM B;  4CXI A;  1R2B A;  3ZNG B;  3I3N A;  2I2R A;  2VPK A;  5DAD A;  4CP3 A;  2OVR A;  4W9L B;  2IHC A;  3ZTC B;  3C6N A;  3E4U A;  4BGC A;  5BO4 C;  2P1P A;  1NEX A;  4U2M A;  4EOZ A;  5LLI B; 
#chains in the Genus database with same CATH homology
 3DRY A;  1VCB B;  3OHU A;  3HVE B;  4ZOU A;  4W9D B;  4U2N A;  2R9R B;  4UIJ A;  4AWJ B;  1S1G A;  3LUT B;  4AJY C;  5BXB A;  4W9K B;  4W9I B;  4JTA B;  1EOF A;  1CS3 A;  3MKS A;  1DSX A;  3BIM A;  4JGH C;  5EUP A;  3DRX A;  5A15 A;  1EXB E;  2IF5 A;  5HZG C;  4W9E B;  5A6R A;  5H7H A;  4J8Z A;  3M5B A;  1QDV A;  3M52 A;  4N9F 5;  1LQB B;  3KVT A;  4WQO C;  2OVQ A;  3OGM A;  1R28 A;  1BUO A;  2E32 B;  2IZV C;  4CXT A;  3OGL A;  1P22 B;  1FS2 B;  4YY8 A;  4U77 A;  1LM8 C;  4W9J B;  1EOD A;  3B84 A;  3HTM A;  3HVE A;  5JH5 B;  1T1D A;  2MA9 C;  2PPI A;  4W9F B;  4W9G B;  4W9C B;  3V7D A;  3ZTD B;  3OGK A;  2Q81 A;  4AP2 A;  3DCG B;  4I6J C;  4UYI A;  3C6P A;  4HXI A;  5FTA A;  4BKS B;  3FKC A;  4BKT B;  5DAF A;  2AST A;  2NZ0 B;  3ZRF B;  1QDW A;  2NN2 A;  4W9H B;  4B9K E;  2VKP A;  5HYW B;  2YY9 A;  3HQI A;  2P1O A;  5IBK A;  4CXJ A;  2FNJ C;  3WSO B;  2ASS A;  4APF A;  3ZKJ B;  4CRH A;  1LDK D;  3L2O A;  3M4T A;  1EOE A;  1FS1 B;  2E31 B;  3DRZ A;  4W9H H;  2OVP A;  4JTD B;  1NN7 A;  1FQV B;  2P1M A;  3M8V A;  2P1Q A;  1HV2 A;  3HU6 A;  2C9W C;  3ZUN B;  4JTC B;  3ZRC B;  3LBZ A;  2P1N A;  2Z8H A;  3OHV A;  4ZGC A;  5BXH A;  4B95 B;  1A68 A;  2A79 B;  4B9K B;  3GA1 A;  5H7G A;  2JZ3 C;  3C6O A;  1R29 A;  5BXD A;  3LNM B;  4CXI A;  1R2B A;  3ZNG B;  3I3N A;  2I2R A;  2VPK A;  5DAD A;  4CP3 A;  2OVR A;  4W9L B;  2IHC A;  3ZTC B;  3C6N A;  3E4U A;  4BGC A;  5BO4 C;  2P1P A;  1NEX A;  4U2M A;  4EOZ A;  5LLI B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2NN2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations