2NZ0B

Crystal structure of potassium channel kv4.3 in complex with its regulatory subunit kchip1 (casp target)
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
136
structure length
136
Chain Sequence
AAWLPFARAAAIGWMPVANCPMPLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV5 (25-28)S2 (49-54)TII3 (35-38)TIV6 (45-48)TI3 (76-79)S3 (75-76)S1 (41-46)AH2 (55-60)TI1 (61-64)AH4 (111-121)TI2 (64-67)TIV7 (65-68)3H1 (70-73)S4 (81-84)AH3 (88-100)TI5 (106-109)AH5 (133-140)3H2 (125-127)TIV8 (129-132)AH1 (8-15)TII2 (31-34)Updating...
connected with : NaN
molecule tags Membrane protein
source organism Homo sapiens
publication title Structural basis for modulation of Kv4 K(+) channels by auxiliary KChIP subunits.
pubmed doi rcsb
molecule keywords Kv channel-interacting protein 1
total genus 29
structure length 136
sequence length 136
chains with identical sequence D
ec nomenclature
pdb deposition date 2006-11-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02214 BTB_2 BTB/POZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2nz0B01
1LQBB 4W9FB 1R2BA 3MKSA 1DSXA 1EXBE 2YY9A 5BXHA 2P1PA 3ZUNB 2Q81A 3HQIA 2OVPA 3OHUA 3KVTA 3GA1A 4I6JC 2NN2A 3HVEA 3LBZA 5DADA 2P1QA 3M8VA 4W9HB 3ZKJB 3I3NA 5BXDA 2C9WC 4AJYC 5JH5B 3ZRFB 4JGHC 1NEXA 2ASSA 1VCBB 5BO4C 4W9GB 3LNMB 3OGKA 4AP2A 4JTDB 2A79B 4N9F5 4U2NA 2E31B 1T1DA 4BKTB 1BUOA 4APFA 4B95B 1HV2A 4HXIA 5A15A 1QDVA 3M5BA 1FS1B 2PPIA 4CP3A 4W9HH 4UYIA 4EOZA 4W9DB 3HU6A 1S1GA 3FKCA 5HZGC 3OGMA 1FQVB 2MA9C 3M4TA 1CS3A 3WSOB 4BKSB 4W9IB 4CXJA 1LM8C 4U77A 2FNJC 2IHCA 1NN7A 1EOEA 3HVEB 2I2RA 3C6PA 2IZVC 2JZ3C 3B84A 5HYWB 1FS2B 3OHVA 5FTAA 3DCGB 3V7DA 2P1NA 2VKPA 3C6OA 1P22B 2OVQA 1EODA 3LUTB 5H7HA 3ZNGB 2P1OA 5A6RA 3ZTCB 1LDKD 4U2MA 2ASTA 4W9KB 5IBKA 2VPKA 3M52A 1A68A 4W9EB 4CXIA 5H7GA 4CRHA 1R29A 4W9LB 4J8ZA 4JTCB 5DAFA 3L2OA 2OVRA 3BIMA 1R28A 4UIJA 4W9JB 2IF5A 4AWJB 1EOFA 2Z8HA 3OGLA 2NZ0B 2P1MA 4WQOC 3HTMA 4B9KE 4ZOUA 3E4UA 3DRZA 3C6NA 5LLIB 4B9KB 1QDWA 2E32B 4JTAB 4W9CB 4BGCA 5BXBA 3ZTDB 5EUPA 4CXTA 3ZRCB 2R9RB
chains in the Genus database with same CATH superfamily
1LQBB 4W9FB 1R2BA 3MKSA 1DSXA 1EXBE 2YY9A 3DRXA 5BXHA 2P1PA 3ZUNB 2Q81A 3HQIA 2OVPA 3OHUA 3KVTA 3GA1A 4I6JC 2NN2A 3HVEA 3LBZA 5DADA 2P1QA 3M8VA 4W9HB 3ZKJB 3I3NA 5BXDA 2C9WC 4AJYC 5JH5B 3ZRFB 4JGHC 1NEXA 2ASSA 1VCBB 5BO4C 4W9GB 3LNMB 3OGKA 4AP2A 4JTDB 2A79B 4N9F5 4U2NA 2E31B 1T1DA 4BKTB 1BUOA 4APFA 4B95B 1HV2A 4HXIA 5A15A 1QDVA 3M5BA 1FS1B 2PPIA 4CP3A 4W9HH 4UYIA 4ZGCA 4EOZA 4W9DB 3HU6A 1S1GA 3FKCA 5HZGC 3OGMA 1FQVB 2MA9C 3M4TA 1CS3A 3WSOB 4BKSB 4W9IB 4CXJA 1LM8C 4U77A 2FNJC 2IHCA 1NN7A 1EOEA 3HVEB 2I2RA 3C6PA 2IZVC 2JZ3C 3B84A 5HYWB 1FS2B 3OHVA 5FTAA 3DCGB 3V7DA 2P1NA 2VKPA 4YY8A 3C6OA 1P22B 2OVQA 1EODA 3LUTB 5H7HA 3ZNGB 2P1OA 5A6RA 3ZTCB 1LDKD 4U2MA 2ASTA 4W9KB 5IBKA 2VPKA 3M52A 1A68A 4W9EB 4CXIA 5H7GA 4CRHA 1R29A 4W9LB 4J8ZA 4JTCB 5DAFA 3L2OA 2OVRA 3BIMA 1R28A 4UIJA 4W9JB 2IF5A 4AWJB 1EOFA 2Z8HA 3OGLA 2NZ0B 3DRYA 2P1MA 4WQOC 3HTMA 4B9KE 4ZOUA 3E4UA 3DRZA 3C6NA 5LLIB 4B9KB 1QDWA 2E32B 4JTAB 4W9CB 4BGCA 5BXBA 3ZTDB 5EUPA 4CXTA 3ZRCB 2R9RB
chains in the Genus database with same CATH topology
1LQBB 4W9FB 1R2BA 3MKSA 1DSXA 1EXBE 2YY9A 3DRXA 5BXHA 2P1PA 3ZUNB 2Q81A 3HQIA 2OVPA 3OHUA 3KVTA 3GA1A 4I6JC 2NN2A 3HVEA 3LBZA 5DADA 2P1QA 3M8VA 4W9HB 3ZKJB 3I3NA 5BXDA 2C9WC 4AJYC 5JH5B 3ZRFB 4JGHC 1NEXA 2ASSA 1VCBB 5BO4C 4W9GB 3LNMB 3OGKA 4AP2A 4JTDB 2A79B 4N9F5 4U2NA 2E31B 1T1DA 4BKTB 1BUOA 4APFA 4B95B 1HV2A 4HXIA 5A15A 1QDVA 3M5BA 1FS1B 2PPIA 4CP3A 4W9HH 4UYIA 4ZGCA 4EOZA 4W9DB 3HU6A 1S1GA 3FKCA 5HZGC 3OGMA 1FQVB 2MA9C 3M4TA 1CS3A 3WSOB 4BKSB 4W9IB 4CXJA 1LM8C 4U77A 2FNJC 2IHCA 1NN7A 1EOEA 3HVEB 2I2RA 3C6PA 2IZVC 2JZ3C 3B84A 5HYWB 1FS2B 3OHVA 5FTAA 3DCGB 3V7DA 2P1NA 2VKPA 4YY8A 3C6OA 1P22B 2OVQA 1EODA 3LUTB 5H7HA 3ZNGB 2P1OA 5A6RA 3ZTCB 1LDKD 4U2MA 2ASTA 4W9KB 5IBKA 2VPKA 3M52A 1A68A 4W9EB 4CXIA 5H7GA 4CRHA 1R29A 4W9LB 4J8ZA 4JTCB 5DAFA 3L2OA 2OVRA 3BIMA 1R28A 4UIJA 4W9JB 2IF5A 4AWJB 1EOFA 2Z8HA 3OGLA 2NZ0B 3DRYA 2P1MA 4WQOC 3HTMA 4B9KE 4ZOUA 3E4UA 3DRZA 3C6NA 5LLIB 4B9KB 1QDWA 2E32B 4JTAB 4W9CB 4BGCA 5BXBA 3ZTDB 5EUPA 4CXTA 3ZRCB 2R9RB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1LQB B;  4W9F B;  1R2B A;  3MKS A;  1DSX A;  1EXB E;  2YY9 A;  5BXH A;  2P1P A;  3ZUN B;  2Q81 A;  3HQI A;  2OVP A;  3OHU A;  3KVT A;  3GA1 A;  4I6J C;  2NN2 A;  3HVE A;  3LBZ A;  5DAD A;  2P1Q A;  3M8V A;  4W9H B;  3ZKJ B;  3I3N A;  5BXD A;  2C9W C;  4AJY C;  5JH5 B;  3ZRF B;  4JGH C;  1NEX A;  2ASS A;  1VCB B;  5BO4 C;  4W9G B;  3LNM B;  3OGK A;  4AP2 A;  4JTD B;  2A79 B;  4N9F 5;  4U2N A;  2E31 B;  1T1D A;  4BKT B;  1BUO A;  4APF A;  4B95 B;  1HV2 A;  4HXI A;  5A15 A;  1QDV A;  3M5B A;  1FS1 B;  2PPI A;  4CP3 A;  4W9H H;  4UYI A;  4EOZ A;  4W9D B;  3HU6 A;  1S1G A;  3FKC A;  5HZG C;  3OGM A;  1FQV B;  2MA9 C;  3M4T A;  1CS3 A;  3WSO B;  4BKS B;  4W9I B;  4CXJ A;  1LM8 C;  4U77 A;  2FNJ C;  2IHC A;  1NN7 A;  1EOE A;  3HVE B;  2I2R A;  3C6P A;  2IZV C;  2JZ3 C;  3B84 A;  5HYW B;  1FS2 B;  3OHV A;  5FTA A;  3DCG B;  3V7D A;  2P1N A;  2VKP A;  3C6O A;  1P22 B;  2OVQ A;  1EOD A;  3LUT B;  5H7H A;  3ZNG B;  2P1O A;  5A6R A;  3ZTC B;  1LDK D;  4U2M A;  2AST A;  4W9K B;  5IBK A;  2VPK A;  3M52 A;  1A68 A;  4W9E B;  4CXI A;  5H7G A;  4CRH A;  1R29 A;  4W9L B;  4J8Z A;  4JTC B;  5DAF A;  3L2O A;  2OVR A;  3BIM A;  1R28 A;  4UIJ A;  4W9J B;  2IF5 A;  4AWJ B;  1EOF A;  2Z8H A;  3OGL A;  2NZ0 B;  2P1M A;  4WQO C;  3HTM A;  4B9K E;  4ZOU A;  3E4U A;  3DRZ A;  3C6N A;  5LLI B;  4B9K B;  1QDW A;  2E32 B;  4JTA B;  4W9C B;  4BGC A;  5BXB A;  3ZTD B;  5EUP A;  4CXT A;  3ZRC B;  2R9R B; 
#chains in the Genus database with same CATH topology
 1LQB B;  4W9F B;  1R2B A;  3MKS A;  1DSX A;  1EXB E;  2YY9 A;  3DRX A;  5BXH A;  2P1P A;  3ZUN B;  2Q81 A;  3HQI A;  2OVP A;  3OHU A;  3KVT A;  3GA1 A;  4I6J C;  2NN2 A;  3HVE A;  3LBZ A;  5DAD A;  2P1Q A;  3M8V A;  4W9H B;  3ZKJ B;  3I3N A;  5BXD A;  2C9W C;  4AJY C;  5JH5 B;  3ZRF B;  4JGH C;  1NEX A;  2ASS A;  1VCB B;  5BO4 C;  4W9G B;  3LNM B;  3OGK A;  4AP2 A;  4JTD B;  2A79 B;  4N9F 5;  4U2N A;  2E31 B;  1T1D A;  4BKT B;  1BUO A;  4APF A;  4B95 B;  1HV2 A;  4HXI A;  5A15 A;  1QDV A;  3M5B A;  1FS1 B;  2PPI A;  4CP3 A;  4W9H H;  4UYI A;  4ZGC A;  4EOZ A;  4W9D B;  3HU6 A;  1S1G A;  3FKC A;  5HZG C;  3OGM A;  1FQV B;  2MA9 C;  3M4T A;  1CS3 A;  3WSO B;  4BKS B;  4W9I B;  4CXJ A;  1LM8 C;  4U77 A;  2FNJ C;  2IHC A;  1NN7 A;  1EOE A;  3HVE B;  2I2R A;  3C6P A;  2IZV C;  2JZ3 C;  3B84 A;  5HYW B;  1FS2 B;  3OHV A;  5FTA A;  3DCG B;  3V7D A;  2P1N A;  2VKP A;  4YY8 A;  3C6O A;  1P22 B;  2OVQ A;  1EOD A;  3LUT B;  5H7H A;  3ZNG B;  2P1O A;  5A6R A;  3ZTC B;  1LDK D;  4U2M A;  2AST A;  4W9K B;  5IBK A;  2VPK A;  3M52 A;  1A68 A;  4W9E B;  4CXI A;  5H7G A;  4CRH A;  1R29 A;  4W9L B;  4J8Z A;  4JTC B;  5DAF A;  3L2O A;  2OVR A;  3BIM A;  1R28 A;  4UIJ A;  4W9J B;  2IF5 A;  4AWJ B;  1EOF A;  2Z8H A;  3OGL A;  2NZ0 B;  3DRY A;  2P1M A;  4WQO C;  3HTM A;  4B9K E;  4ZOU A;  3E4U A;  3DRZ A;  3C6N A;  5LLI B;  4B9K B;  1QDW A;  2E32 B;  4JTA B;  4W9C B;  4BGC A;  5BXB A;  3ZTD B;  5EUP A;  4CXT A;  3ZRC B;  2R9R B; 
#chains in the Genus database with same CATH homology
 1LQB B;  4W9F B;  1R2B A;  3MKS A;  1DSX A;  1EXB E;  2YY9 A;  3DRX A;  5BXH A;  2P1P A;  3ZUN B;  2Q81 A;  3HQI A;  2OVP A;  3OHU A;  3KVT A;  3GA1 A;  4I6J C;  2NN2 A;  3HVE A;  3LBZ A;  5DAD A;  2P1Q A;  3M8V A;  4W9H B;  3ZKJ B;  3I3N A;  5BXD A;  2C9W C;  4AJY C;  5JH5 B;  3ZRF B;  4JGH C;  1NEX A;  2ASS A;  1VCB B;  5BO4 C;  4W9G B;  3LNM B;  3OGK A;  4AP2 A;  4JTD B;  2A79 B;  4N9F 5;  4U2N A;  2E31 B;  1T1D A;  4BKT B;  1BUO A;  4APF A;  4B95 B;  1HV2 A;  4HXI A;  5A15 A;  1QDV A;  3M5B A;  1FS1 B;  2PPI A;  4CP3 A;  4W9H H;  4UYI A;  4ZGC A;  4EOZ A;  4W9D B;  3HU6 A;  1S1G A;  3FKC A;  5HZG C;  3OGM A;  1FQV B;  2MA9 C;  3M4T A;  1CS3 A;  3WSO B;  4BKS B;  4W9I B;  4CXJ A;  1LM8 C;  4U77 A;  2FNJ C;  2IHC A;  1NN7 A;  1EOE A;  3HVE B;  2I2R A;  3C6P A;  2IZV C;  2JZ3 C;  3B84 A;  5HYW B;  1FS2 B;  3OHV A;  5FTA A;  3DCG B;  3V7D A;  2P1N A;  2VKP A;  4YY8 A;  3C6O A;  1P22 B;  2OVQ A;  1EOD A;  3LUT B;  5H7H A;  3ZNG B;  2P1O A;  5A6R A;  3ZTC B;  1LDK D;  4U2M A;  2AST A;  4W9K B;  5IBK A;  2VPK A;  3M52 A;  1A68 A;  4W9E B;  4CXI A;  5H7G A;  4CRH A;  1R29 A;  4W9L B;  4J8Z A;  4JTC B;  5DAF A;  3L2O A;  2OVR A;  3BIM A;  1R28 A;  4UIJ A;  4W9J B;  2IF5 A;  4AWJ B;  1EOF A;  2Z8H A;  3OGL A;  2NZ0 B;  3DRY A;  2P1M A;  4WQO C;  3HTM A;  4B9K E;  4ZOU A;  3E4U A;  3DRZ A;  3C6N A;  5LLI B;  4B9K B;  1QDW A;  2E32 B;  4JTA B;  4W9C B;  4BGC A;  5BXB A;  3ZTD B;  5EUP A;  4CXT A;  3ZRC B;  2R9R B;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.