2ORAA

Rhodanese (thiosulfate: cyanide sulfurtransferase)
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
293
structure length
292
Chain Sequence
VHQVLYRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQGKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Active site structural features for chemically modified forms of rhodanese.
pubmed doi rcsb
molecule tags Transferase
molecule keywords OXIDIZED RHODANESE
total genus 99
structure length 292
sequence length 293
ec nomenclature ec 2.8.1.1: Thiosulfate sulfurtransferase.
pdb deposition date 1996-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2oraA02
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2oraA01
3K9RA 1YMDA 1DP2A 3HZUA 4JGTA 1GN0A 3AAXA 1QB0A 2VSWA 4WH7A 3D1PA 1TQ1A 2ORAA 1YMKA 2OUCA 2A2KA 3R2UA 1YM9A 2HHGA 3GK5A 3P3AA 1RHSA 3MZZA 1BOIA 1C25A 3HIXA 5HBLA 2WLRA 1CWTA 1OKGA 1ORBA 2J6PA 2MRMA 2JTSA 4OCGA 4F67A 5LAMA 1VEEA 5HBQA 3IPPA 1YT8A 5HPAA 1GMXA 1H4MX 1WV9A 1H4KX 3F4AA 2UZQA 2MOLA 1RHDA 3O3WA 3OLHA 3OP3A 4WH9A 2EG4A 1QXNA 1UARA 3ICRA 3TG3A 1T3KA 2GWFA 2JTRA 5HBPA 1CWRA 2IFVA 5LAOA 1WHBA 3FS5A 3TP9A 2JTQA 1E0CA 2EG3A 3ICTA 1HZMA 3HWIA 1CWSA 3NTDA 3FLHA 3I2VA 3NT6A 3TG1B 3AAYA 5HBOA 3NHVA 3IWHA 2EG4B 3FNJA 1BOHA 2FSXA 3G5JA 3FOJA 3UTNX 3IPOA 2DCQA 2K0ZA 2IFDA 3ICSA 1URHA 2MOIA 1YMLA 1YS0A 3I3UA 3NTAA 2WLXA 3ILMA 2KL3A
chains in the Genus database with same CATH superfamily
3K9RA 1YMDA 1DP2A 3HZUA 4JGTA 1GN0A 3AAXA 1QB0A 2VSWA 4WH7A 3D1PA 1TQ1A 2ORAA 1YMKA 2OUCA 2A2KA 3R2UA 1YM9A 2HHGA 3GK5A 3P3AA 1RHSA 3MZZA 2Q82A 1BOIA 1C25A 3HIXA 5HBLA 2WLRA 1CWTA 1OKGA 1ORBA 2J6PA 2MRMA 2JTSA 4OCGA 4F67A 5LAMA 1VEEA 5HBQA 3IPPA 1YT8A 5HPAA 1GMXA 1H4MX 1WV9A 1H4KX 3F4AA 2UZQA 2MOLA 1RHDA 3O3WA 3OLHA 3OP3A 4WH9A 2EG4A 1QXNA 1UARA 3ICRA 3TG3A 1T3KA 2GWFA 2JTRA 5HBPA 1CWRA 2IFVA 5LAOA 1WHBA 3FS5A 3TP9A 2JTQA 1E0CA 2EG3A 3ICTA 1HZMA 3HWIA 1CWSA 3NTDA 3FLHA 3I2VA 3NT6A 3TG1B 3AAYA 5HBOA 3NHVA 3IWHA 2EG4B 3FNJA 1BOHA 2FSXA 3G5JA 3FOJA 3UTNX 3IPOA 2DCQA 2K0ZA 2IFDA 3ICSA 1URHA 2MOIA 1YMLA 1YS0A 3I3UA 3NTAA 2WLXA 3ILMA 2KL3A
chains in the Genus database with same CATH topology
3K9RA 1YMDA 1DP2A 3HZUA 4JGTA 1GN0A 3AAXA 1QB0A 2VSWA 4WH7A 3D1PA 1TQ1A 2ORAA 1YMKA 2OUCA 2A2KA 3R2UA 1YM9A 2HHGA 3GK5A 3P3AA 1RHSA 3MZZA 1BOIA 1C25A 3HIXA 5HBLA 2WLRA 1CWTA 1OKGA 1ORBA 2J6PA 2MRMA 2JTSA 4OCGA 4F67A 5LAMA 1VEEA 5HBQA 3IPPA 1YT8A 5HPAA 1GMXA 1H4MX 1WV9A 1H4KX 3F4AA 2UZQA 2MOLA 1RHDA 3O3WA 3OLHA 3OP3A 4WH9A 2EG4A 1QXNA 1UARA 3ICRA 3TG3A 1T3KA 2GWFA 2JTRA 5HBPA 1CWRA 2IFVA 5LAOA 1WHBA 3FS5A 3TP9A 2JTQA 1E0CA 2EG3A 3ICTA 1HZMA 3HWIA 1CWSA 3NTDA 3FLHA 3I2VA 3NT6A 3TG1B 3AAYA 5HBOA 3NHVA 3IWHA 2EG4B 3FNJA 1BOHA 2FSXA 3G5JA 3FOJA 3UTNX 3IPOA 2DCQA 2K0ZA 2IFDA 3ICSA 1URHA 2MOIA 1YMLA 1YS0A 3I3UA 3NTAA 2WLXA 3ILMA 2KL3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K9R A;  1YMD A;  1DP2 A;  3HZU A;  4JGT A;  1GN0 A;  3AAX A;  1QB0 A;  2VSW A;  4WH7 A;  3D1P A;  1TQ1 A;  2ORA A;  1YMK A;  2OUC A;  2A2K A;  3R2U A;  1YM9 A;  2HHG A;  3GK5 A;  3P3A A;  1RHS A;  3MZZ A;  1BOI A;  1C25 A;  3HIX A;  5HBL A;  2WLR A;  1CWT A;  1OKG A;  1ORB A;  2J6P A;  2MRM A;  2JTS A;  4OCG A;  4F67 A;  5LAM A;  1VEE A;  5HBQ A;  3IPP A;  1YT8 A;  5HPA A;  1GMX A;  1H4M X;  1WV9 A;  1H4K X;  3F4A A;  2UZQ A;  2MOL A;  1RHD A;  3O3W A;  3OLH A;  3OP3 A;  4WH9 A;  2EG4 A;  1QXN A;  1UAR A;  3ICR A;  3TG3 A;  1T3K A;  2GWF A;  2JTR A;  5HBP A;  1CWR A;  2IFV A;  5LAO A;  1WHB A;  3FS5 A;  3TP9 A;  2JTQ A;  1E0C A;  2EG3 A;  3ICT A;  1HZM A;  3HWI A;  1CWS A;  3NTD A;  3FLH A;  3I2V A;  3NT6 A;  3TG1 B;  3AAY A;  5HBO A;  3NHV A;  3IWH A;  2EG4 B;  3FNJ A;  1BOH A;  2FSX A;  3G5J A;  3FOJ A;  3UTN X;  3IPO A;  2DCQ A;  2K0Z A;  2IFD A;  3ICS A;  1URH A;  2MOI A;  1YML A;  1YS0 A;  3I3U A;  3NTA A;  2WLX A;  3ILM A;  2KL3 A; 
#chains in the Genus database with same CATH topology
 3K9R A;  1YMD A;  1DP2 A;  3HZU A;  4JGT A;  1GN0 A;  3AAX A;  1QB0 A;  2VSW A;  4WH7 A;  3D1P A;  1TQ1 A;  2ORA A;  1YMK A;  2OUC A;  2A2K A;  3R2U A;  1YM9 A;  2HHG A;  3GK5 A;  3P3A A;  1RHS A;  3MZZ A;  2Q82 A;  1BOI A;  1C25 A;  3HIX A;  5HBL A;  2WLR A;  1CWT A;  1OKG A;  1ORB A;  2J6P A;  2MRM A;  2JTS A;  4OCG A;  4F67 A;  5LAM A;  1VEE A;  5HBQ A;  3IPP A;  1YT8 A;  5HPA A;  1GMX A;  1H4M X;  1WV9 A;  1H4K X;  3F4A A;  2UZQ A;  2MOL A;  1RHD A;  3O3W A;  3OLH A;  3OP3 A;  4WH9 A;  2EG4 A;  1QXN A;  1UAR A;  3ICR A;  3TG3 A;  1T3K A;  2GWF A;  2JTR A;  5HBP A;  1CWR A;  2IFV A;  5LAO A;  1WHB A;  3FS5 A;  3TP9 A;  2JTQ A;  1E0C A;  2EG3 A;  3ICT A;  1HZM A;  3HWI A;  1CWS A;  3NTD A;  3FLH A;  3I2V A;  3NT6 A;  3TG1 B;  3AAY A;  5HBO A;  3NHV A;  3IWH A;  2EG4 B;  3FNJ A;  1BOH A;  2FSX A;  3G5J A;  3FOJ A;  3UTN X;  3IPO A;  2DCQ A;  2K0Z A;  2IFD A;  3ICS A;  1URH A;  2MOI A;  1YML A;  1YS0 A;  3I3U A;  3NTA A;  2WLX A;  3ILM A;  2KL3 A; 
#chains in the Genus database with same CATH homology
 3K9R A;  1YMD A;  1DP2 A;  3HZU A;  4JGT A;  1GN0 A;  3AAX A;  1QB0 A;  2VSW A;  4WH7 A;  3D1P A;  1TQ1 A;  2ORA A;  1YMK A;  2OUC A;  2A2K A;  3R2U A;  1YM9 A;  2HHG A;  3GK5 A;  3P3A A;  1RHS A;  3MZZ A;  1BOI A;  1C25 A;  3HIX A;  5HBL A;  2WLR A;  1CWT A;  1OKG A;  1ORB A;  2J6P A;  2MRM A;  2JTS A;  4OCG A;  4F67 A;  5LAM A;  1VEE A;  5HBQ A;  3IPP A;  1YT8 A;  5HPA A;  1GMX A;  1H4M X;  1WV9 A;  1H4K X;  3F4A A;  2UZQ A;  2MOL A;  1RHD A;  3O3W A;  3OLH A;  3OP3 A;  4WH9 A;  2EG4 A;  1QXN A;  1UAR A;  3ICR A;  3TG3 A;  1T3K A;  2GWF A;  2JTR A;  5HBP A;  1CWR A;  2IFV A;  5LAO A;  1WHB A;  3FS5 A;  3TP9 A;  2JTQ A;  1E0C A;  2EG3 A;  3ICT A;  1HZM A;  3HWI A;  1CWS A;  3NTD A;  3FLH A;  3I2V A;  3NT6 A;  3TG1 B;  3AAY A;  5HBO A;  3NHV A;  3IWH A;  2EG4 B;  3FNJ A;  1BOH A;  2FSX A;  3G5J A;  3FOJ A;  3UTN X;  3IPO A;  2DCQ A;  2K0Z A;  2IFD A;  3ICS A;  1URH A;  2MOI A;  1YML A;  1YS0 A;  3I3U A;  3NTA A;  2WLX A;  3ILM A;  2KL3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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