2P1MA

Tir1-ask1 complex structure
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
153
structure length
90
Chain Sequence
LKSEAVALESQTIAPLPNVTSKILAKVIEYLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV1 (23-26)3H1 (21-23)TIV2 (24-27)TIV4 (27-30)TI'1 (44-47)TI'2 (49-52)TIV5 (48-51)TIV6 (50-53)TIV7 (51-54)TIV8 (52-55)TIV9 (53-56)TIV11 (55-58)TIV3 (26-29)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Arabidopsis thaliana
publication title Mechanism of auxin perception by the TIR1 ubiquitin ligase
pubmed doi rcsb
molecule keywords SKP1-like protein 1A
total genus 26
structure length 90
sequence length 153
ec nomenclature
pdb deposition date 2007-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 2p1mA00
3C6NA 1FS2B 4JTAB 1A68A 4EOZA 2A79B 1HV2A 3HVEA 3OGMA 4BGCA 5DAFA 1BUOA 5DADA 5A15A 3DRZA 5LLIB 4JTCB 4JTDB 3ZKJB 4CXIA 1P22B 3M4TA 3M8VA 5EUPA 3C6PA 1QDWA 3OHUA 4W9HB 4AJYC 1CS3A 1EOEA 5HZGC 1EODA 4U77A 3HU6A 2R9RB 2YY9A 3M52A 1R28A 1S1GA 2C9WC 3C6OA 4U2NA 4W9LB 5A6RA 3OGKA 1EXBE 4HXIA 4W9HH 5BXDA 3BIMA 2P1OA 4J8ZA 1R29A 3LBZA 2P1MA 1FQVB 4W9DB 2P1QA 2IF5A 1EOFA 3LNMB 1VCBB 4CP3A 3KVTA 2MA9C 3MKSA 2ASSA 3HTMA 1NN7A 3OGLA 4CXTA 5H7HA 4W9FB 1NEXA 4B9KE 3B84A 2P1NA 1QDVA 5BO4C 1FS1B 4WQOC 3ZRCB 4W9GB 4W9KB 5JH5B 2I2RA 4UYIA 3HVEB 3GA1A 2E32B 2ASTA 4U2MA 4UIJA 2Z8HA 4CRHA 3ZTDB 5IBKA 3WSOB 1DSXA 1T1DA 4N9F5 3V7DA 5H7GA 4JGHC 5FTAA 3I3NA 4W9CB 2IHCA 2VPKA 3L2OA 2JZ3C 5BXBA 4APFA 2PPIA 3E4UA 2OVPA 4ZOUA 4BKSB 2E31B 2FNJC 3ZNGB 3M5BA 3DCGB 1LQBB 5HYWB 1LM8C 4W9IB 2NZ0B 3OHVA 2P1PA 3HQIA 3ZUNB 4I6JC 4CXJA 2Q81A 3FKCA 4W9JB 2NN2A 4W9EB 1LDKD 2IZVC 3ZTCB 4B9KB 4B95B 4BKTB 3LUTB 4AWJB 5BXHA 4AP2A 3ZRFB 1R2BA 2OVQA 2VKPA 2OVRA
chains in the Genus database with same CATH superfamily
3C6NA 1FS2B 4JTAB 1A68A 4EOZA 2A79B 1HV2A 3HVEA 3OGMA 4BGCA 5DAFA 1BUOA 5DADA 5A15A 3DRZA 3DRXA 5LLIB 4JTCB 4JTDB 3ZKJB 4CXIA 1P22B 3M4TA 3M8VA 5EUPA 3C6PA 1QDWA 3OHUA 4W9HB 4AJYC 1CS3A 1EOEA 5HZGC 1EODA 4U77A 3HU6A 2R9RB 2YY9A 3M52A 1R28A 1S1GA 2C9WC 3C6OA 4U2NA 4W9LB 5A6RA 3OGKA 1EXBE 4HXIA 4W9HH 5BXDA 3BIMA 2P1OA 4J8ZA 1R29A 3LBZA 2P1MA 1FQVB 4W9DB 2P1QA 2IF5A 1EOFA 3LNMB 1VCBB 4CP3A 3KVTA 2MA9C 3MKSA 2ASSA 3HTMA 1NN7A 3OGLA 4CXTA 5H7HA 4W9FB 1NEXA 4B9KE 3B84A 2P1NA 1QDVA 5BO4C 1FS1B 4WQOC 3ZRCB 4W9GB 4W9KB 5JH5B 2I2RA 4UYIA 3HVEB 3GA1A 2E32B 2ASTA 4U2MA 4UIJA 2Z8HA 4CRHA 3ZTDB 5IBKA 3WSOB 3DRYA 1DSXA 1T1DA 4N9F5 4YY8A 3V7DA 5H7GA 4JGHC 5FTAA 3I3NA 4W9CB 2IHCA 2VPKA 3L2OA 2JZ3C 5BXBA 4APFA 2PPIA 3E4UA 2OVPA 4ZOUA 4BKSB 2E31B 2FNJC 3ZNGB 3M5BA 3DCGB 1LQBB 5HYWB 1LM8C 4W9IB 2NZ0B 3OHVA 2P1PA 3HQIA 3ZUNB 4I6JC 4CXJA 2Q81A 3FKCA 4W9JB 2NN2A 4W9EB 1LDKD 2IZVC 3ZTCB 4B9KB 4B95B 4BKTB 3LUTB 4AWJB 5BXHA 4AP2A 3ZRFB 4ZGCA 1R2BA 2OVQA 2VKPA 2OVRA
chains in the Genus database with same CATH topology
3C6NA 1FS2B 4JTAB 1A68A 4EOZA 2A79B 1HV2A 3HVEA 3OGMA 4BGCA 5DAFA 1BUOA 5DADA 5A15A 3DRZA 3DRXA 5LLIB 4JTCB 4JTDB 3ZKJB 4CXIA 1P22B 3M4TA 3M8VA 5EUPA 3C6PA 1QDWA 3OHUA 4W9HB 4AJYC 1CS3A 1EOEA 5HZGC 1EODA 4U77A 3HU6A 2R9RB 2YY9A 3M52A 1R28A 1S1GA 2C9WC 3C6OA 4U2NA 4W9LB 5A6RA 3OGKA 1EXBE 4HXIA 4W9HH 5BXDA 3BIMA 2P1OA 4J8ZA 1R29A 3LBZA 2P1MA 1FQVB 4W9DB 2P1QA 2IF5A 1EOFA 3LNMB 1VCBB 4CP3A 3KVTA 2MA9C 3MKSA 2ASSA 3HTMA 1NN7A 3OGLA 4CXTA 5H7HA 4W9FB 1NEXA 4B9KE 3B84A 2P1NA 1QDVA 5BO4C 1FS1B 4WQOC 3ZRCB 4W9GB 4W9KB 5JH5B 2I2RA 4UYIA 3HVEB 3GA1A 2E32B 2ASTA 4U2MA 4UIJA 2Z8HA 4CRHA 3ZTDB 5IBKA 3WSOB 3DRYA 1DSXA 1T1DA 4N9F5 4YY8A 3V7DA 5H7GA 4JGHC 5FTAA 3I3NA 4W9CB 2IHCA 2VPKA 3L2OA 2JZ3C 5BXBA 4APFA 2PPIA 3E4UA 2OVPA 4ZOUA 4BKSB 2E31B 2FNJC 3ZNGB 3M5BA 3DCGB 1LQBB 5HYWB 1LM8C 4W9IB 2NZ0B 3OHVA 2P1PA 3HQIA 3ZUNB 4I6JC 4CXJA 2Q81A 3FKCA 4W9JB 2NN2A 4W9EB 1LDKD 2IZVC 3ZTCB 4B9KB 4B95B 4BKTB 3LUTB 4AWJB 5BXHA 4AP2A 3ZRFB 4ZGCA 1R2BA 2OVQA 2VKPA 2OVRA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3C6N A;  1FS2 B;  4JTA B;  1A68 A;  4EOZ A;  2A79 B;  1HV2 A;  3HVE A;  3OGM A;  4BGC A;  5DAF A;  1BUO A;  5DAD A;  5A15 A;  3DRZ A;  5LLI B;  4JTC B;  4JTD B;  3ZKJ B;  4CXI A;  1P22 B;  3M4T A;  3M8V A;  5EUP A;  3C6P A;  1QDW A;  3OHU A;  4W9H B;  4AJY C;  1CS3 A;  1EOE A;  5HZG C;  1EOD A;  4U77 A;  3HU6 A;  2R9R B;  2YY9 A;  3M52 A;  1R28 A;  1S1G A;  2C9W C;  3C6O A;  4U2N A;  4W9L B;  5A6R A;  3OGK A;  1EXB E;  4HXI A;  4W9H H;  5BXD A;  3BIM A;  2P1O A;  4J8Z A;  1R29 A;  3LBZ A;  2P1M A;  1FQV B;  4W9D B;  2P1Q A;  2IF5 A;  1EOF A;  3LNM B;  1VCB B;  4CP3 A;  3KVT A;  2MA9 C;  3MKS A;  2ASS A;  3HTM A;  1NN7 A;  3OGL A;  4CXT A;  5H7H A;  4W9F B;  1NEX A;  4B9K E;  3B84 A;  2P1N A;  1QDV A;  5BO4 C;  1FS1 B;  4WQO C;  3ZRC B;  4W9G B;  4W9K B;  5JH5 B;  2I2R A;  4UYI A;  3HVE B;  3GA1 A;  2E32 B;  2AST A;  4U2M A;  4UIJ A;  2Z8H A;  4CRH A;  3ZTD B;  5IBK A;  3WSO B;  1DSX A;  1T1D A;  4N9F 5;  3V7D A;  5H7G A;  4JGH C;  5FTA A;  3I3N A;  4W9C B;  2IHC A;  2VPK A;  3L2O A;  2JZ3 C;  5BXB A;  4APF A;  2PPI A;  3E4U A;  2OVP A;  4ZOU A;  4BKS B;  2E31 B;  2FNJ C;  3ZNG B;  3M5B A;  3DCG B;  1LQB B;  5HYW B;  1LM8 C;  4W9I B;  2NZ0 B;  3OHV A;  2P1P A;  3HQI A;  3ZUN B;  4I6J C;  4CXJ A;  2Q81 A;  3FKC A;  4W9J B;  2NN2 A;  4W9E B;  1LDK D;  2IZV C;  3ZTC B;  4B9K B;  4B95 B;  4BKT B;  3LUT B;  4AWJ B;  5BXH A;  4AP2 A;  3ZRF B;  1R2B A;  2OVQ A;  2VKP A;  2OVR A; 
#chains in the Genus database with same CATH topology
 3C6N A;  1FS2 B;  4JTA B;  1A68 A;  4EOZ A;  2A79 B;  1HV2 A;  3HVE A;  3OGM A;  4BGC A;  5DAF A;  1BUO A;  5DAD A;  5A15 A;  3DRZ A;  3DRX A;  5LLI B;  4JTC B;  4JTD B;  3ZKJ B;  4CXI A;  1P22 B;  3M4T A;  3M8V A;  5EUP A;  3C6P A;  1QDW A;  3OHU A;  4W9H B;  4AJY C;  1CS3 A;  1EOE A;  5HZG C;  1EOD A;  4U77 A;  3HU6 A;  2R9R B;  2YY9 A;  3M52 A;  1R28 A;  1S1G A;  2C9W C;  3C6O A;  4U2N A;  4W9L B;  5A6R A;  3OGK A;  1EXB E;  4HXI A;  4W9H H;  5BXD A;  3BIM A;  2P1O A;  4J8Z A;  1R29 A;  3LBZ A;  2P1M A;  1FQV B;  4W9D B;  2P1Q A;  2IF5 A;  1EOF A;  3LNM B;  1VCB B;  4CP3 A;  3KVT A;  2MA9 C;  3MKS A;  2ASS A;  3HTM A;  1NN7 A;  3OGL A;  4CXT A;  5H7H A;  4W9F B;  1NEX A;  4B9K E;  3B84 A;  2P1N A;  1QDV A;  5BO4 C;  1FS1 B;  4WQO C;  3ZRC B;  4W9G B;  4W9K B;  5JH5 B;  2I2R A;  4UYI A;  3HVE B;  3GA1 A;  2E32 B;  2AST A;  4U2M A;  4UIJ A;  2Z8H A;  4CRH A;  3ZTD B;  5IBK A;  3WSO B;  3DRY A;  1DSX A;  1T1D A;  4N9F 5;  4YY8 A;  3V7D A;  5H7G A;  4JGH C;  5FTA A;  3I3N A;  4W9C B;  2IHC A;  2VPK A;  3L2O A;  2JZ3 C;  5BXB A;  4APF A;  2PPI A;  3E4U A;  2OVP A;  4ZOU A;  4BKS B;  2E31 B;  2FNJ C;  3ZNG B;  3M5B A;  3DCG B;  1LQB B;  5HYW B;  1LM8 C;  4W9I B;  2NZ0 B;  3OHV A;  2P1P A;  3HQI A;  3ZUN B;  4I6J C;  4CXJ A;  2Q81 A;  3FKC A;  4W9J B;  2NN2 A;  4W9E B;  1LDK D;  2IZV C;  3ZTC B;  4B9K B;  4B95 B;  4BKT B;  3LUT B;  4AWJ B;  5BXH A;  4AP2 A;  3ZRF B;  4ZGC A;  1R2B A;  2OVQ A;  2VKP A;  2OVR A; 
#chains in the Genus database with same CATH homology
 3C6N A;  1FS2 B;  4JTA B;  1A68 A;  4EOZ A;  2A79 B;  1HV2 A;  3HVE A;  3OGM A;  4BGC A;  5DAF A;  1BUO A;  5DAD A;  5A15 A;  3DRZ A;  3DRX A;  5LLI B;  4JTC B;  4JTD B;  3ZKJ B;  4CXI A;  1P22 B;  3M4T A;  3M8V A;  5EUP A;  3C6P A;  1QDW A;  3OHU A;  4W9H B;  4AJY C;  1CS3 A;  1EOE A;  5HZG C;  1EOD A;  4U77 A;  3HU6 A;  2R9R B;  2YY9 A;  3M52 A;  1R28 A;  1S1G A;  2C9W C;  3C6O A;  4U2N A;  4W9L B;  5A6R A;  3OGK A;  1EXB E;  4HXI A;  4W9H H;  5BXD A;  3BIM A;  2P1O A;  4J8Z A;  1R29 A;  3LBZ A;  2P1M A;  1FQV B;  4W9D B;  2P1Q A;  2IF5 A;  1EOF A;  3LNM B;  1VCB B;  4CP3 A;  3KVT A;  2MA9 C;  3MKS A;  2ASS A;  3HTM A;  1NN7 A;  3OGL A;  4CXT A;  5H7H A;  4W9F B;  1NEX A;  4B9K E;  3B84 A;  2P1N A;  1QDV A;  5BO4 C;  1FS1 B;  4WQO C;  3ZRC B;  4W9G B;  4W9K B;  5JH5 B;  2I2R A;  4UYI A;  3HVE B;  3GA1 A;  2E32 B;  2AST A;  4U2M A;  4UIJ A;  2Z8H A;  4CRH A;  3ZTD B;  5IBK A;  3WSO B;  3DRY A;  1DSX A;  1T1D A;  4N9F 5;  4YY8 A;  3V7D A;  5H7G A;  4JGH C;  5FTA A;  3I3N A;  4W9C B;  2IHC A;  2VPK A;  3L2O A;  2JZ3 C;  5BXB A;  4APF A;  2PPI A;  3E4U A;  2OVP A;  4ZOU A;  4BKS B;  2E31 B;  2FNJ C;  3ZNG B;  3M5B A;  3DCG B;  1LQB B;  5HYW B;  1LM8 C;  4W9I B;  2NZ0 B;  3OHV A;  2P1P A;  3HQI A;  3ZUN B;  4I6J C;  4CXJ A;  2Q81 A;  3FKC A;  4W9J B;  2NN2 A;  4W9E B;  1LDK D;  2IZV C;  3ZTC B;  4B9K B;  4B95 B;  4BKT B;  3LUT B;  4AWJ B;  5BXH A;  4AP2 A;  3ZRF B;  4ZGC A;  1R2B A;  2OVQ A;  2VKP A;  2OVR A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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