2P1P | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	153
structure length	91
Chain Sequence	LKSSDGESFEVEEAVALESQTIAVPLPNVFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfd6a3cd84f7d86633eb545/pdb.gz): 1632 ms

reading 91 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

91 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 16 ms

Adding embedded #jmolscript: select ({0:90});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Arabidopsis thaliana
publication title	Mechanism of auxin perception by the TIR1 ubiquitin ligase pubmed doi rcsb
molecule keywords	SKP1-like protein 1A
total genus	27
structure length	91
sequence length	153
ec nomenclature
pdb deposition date	2007-03-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01466	Skp1	Skp1 family, dimerisation domain
A	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	2p1pA00

3M4TA 5DADA 5HZGC 4AJYC 1QDVA 4EOZA 2P1MA 4CP3A 1EOEA 2IZVC 1R28A 2IHCA 3BIMA 3OGMA 4JTCB 3HVEB 4W9KB 3MKSA 4W9IB 3V7DA 3HU6A 1LQBB 4CXTA 3OGKA 5H7HA 3M5BA 2I2RA 2ASTA 2MA9C 1NN7A 4I6JC 5BXBA 3HVEA 3ZNGB 1FS1B 1R29A 5A15A 4B95B 1EXBE 3LUTB 2P1QA 5HYWB 1EODA 4AWJB 2ASSA 2NZ0B 3M52A 4BGCA 4W9HB 2OVRA 1BUOA 3ZRCB 2YY9A 2Q81A 3ZTDB 1T1DA 4AP2A 4JGHC 5LLIB 1NEXA 3C6NA 1LM8C 3ZKJB 3I3NA 4BKSB 5DAFA 1P22B 2C9WC 1EOFA 4CRHA 1VCBB 5BXHA 2VPKA 4UIJA 3L2OA 4W9FB 2JZ3C 3C6PA 4W9EB 4WQOC 5H7GA 2P1PA 2NN2A 4W9DB 2E31B 3GA1A 2IF5A 1LDKD 3ZUNB 4B9KB 1QDWA 4U77A 1HV2A 5A6RA 4J8ZA 4UYIA 3DRZA 3LNMB 5IBKA 3HTMA 3ZRFB 4W9HH 5JH5B 3OHVA 3M8VA 4W9GB 3ZTCB 2R9RB 3B84A 2OVPA 3E4UA 5FTAA 2PPIA 3WSOB 2Z8HA 4HXIA 4N9F5 4U2NA 2VKPA 4U2MA 5BO4C 4APFA 2P1OA 1FQVB 3LBZA 1R2BA 4BKTB 4CXIA 3C6OA 5EUPA 3OGLA 2FNJC 2OVQA 2P1NA 4JTAB 1A68A 3FKCA 4B9KE 3DCGB 4W9JB 2E32B 3KVTA 1FS2B 4ZOUA 4W9LB 4W9CB 3OHUA 2A79B 4CXJA 1DSXA 5BXDA 1S1GA 1CS3A 4JTDB 3HQIA
chains in the Genus database with same CATH superfamily

3M4TA 5DADA 5HZGC 4AJYC 1QDVA 4EOZA 2P1MA 4CP3A 1EOEA 2IZVC 1R28A 2IHCA 3BIMA 3OGMA 4JTCB 3HVEB 4W9KB 3MKSA 4W9IB 3V7DA 3HU6A 1LQBB 4CXTA 3OGKA 5H7HA 3M5BA 2I2RA 2ASTA 2MA9C 1NN7A 4I6JC 5BXBA 3HVEA 3ZNGB 1FS1B 1R29A 5A15A 4B95B 1EXBE 3LUTB 2P1QA 5HYWB 1EODA 4AWJB 2ASSA 2NZ0B 3M52A 4BGCA 4W9HB 2OVRA 1BUOA 3ZRCB 2YY9A 2Q81A 3ZTDB 1T1DA 4AP2A 4JGHC 5LLIB 1NEXA 3C6NA 1LM8C 4ZGCA 3ZKJB 3I3NA 4BKSB 5DAFA 1P22B 2C9WC 1EOFA 4CRHA 1VCBB 5BXHA 2VPKA 4UIJA 3L2OA 4W9FB 2JZ3C 3C6PA 4W9EB 4WQOC 4YY8A 5H7GA 2P1PA 2NN2A 4W9DB 2E31B 3GA1A 2IF5A 1LDKD 3ZUNB 4B9KB 1QDWA 4U77A 1HV2A 5A6RA 4J8ZA 4UYIA 3DRZA 3LNMB 5IBKA 3HTMA 3ZRFB 4W9HH 5JH5B 3OHVA 3M8VA 4W9GB 3ZTCB 2R9RB 3B84A 2OVPA 3E4UA 5FTAA 2PPIA 3WSOB 2Z8HA 4HXIA 4N9F5 4U2NA 2VKPA 4U2MA 5BO4C 4APFA 2P1OA 1FQVB 3LBZA 1R2BA 4BKTB 4CXIA 3C6OA 5EUPA 3OGLA 2FNJC 2OVQA 2P1NA 3DRXA 4JTAB 1A68A 3FKCA 4B9KE 3DCGB 4W9JB 2E32B 3KVTA 1FS2B 4ZOUA 4W9LB 4W9CB 3OHUA 2A79B 4CXJA 1DSXA 5BXDA 3DRYA 1S1GA 1CS3A 4JTDB 3HQIA
chains in the Genus database with same CATH topology

3M4TA 5DADA 5HZGC 4AJYC 1QDVA 4EOZA 2P1MA 4CP3A 1EOEA 2IZVC 1R28A 2IHCA 3BIMA 3OGMA 4JTCB 3HVEB 4W9KB 3MKSA 4W9IB 3V7DA 3HU6A 1LQBB 4CXTA 3OGKA 5H7HA 3M5BA 2I2RA 2ASTA 2MA9C 1NN7A 4I6JC 5BXBA 3HVEA 3ZNGB 1FS1B 1R29A 5A15A 4B95B 1EXBE 3LUTB 2P1QA 5HYWB 1EODA 4AWJB 2ASSA 2NZ0B 3M52A 4BGCA 4W9HB 2OVRA 1BUOA 3ZRCB 2YY9A 2Q81A 3ZTDB 1T1DA 4AP2A 4JGHC 5LLIB 1NEXA 3C6NA 1LM8C 4ZGCA 3ZKJB 3I3NA 4BKSB 5DAFA 1P22B 2C9WC 1EOFA 4CRHA 1VCBB 5BXHA 2VPKA 4UIJA 3L2OA 4W9FB 2JZ3C 3C6PA 4W9EB 4WQOC 4YY8A 5H7GA 2P1PA 2NN2A 4W9DB 2E31B 3GA1A 2IF5A 1LDKD 3ZUNB 4B9KB 1QDWA 4U77A 1HV2A 5A6RA 4J8ZA 4UYIA 3DRZA 3LNMB 5IBKA 3HTMA 3ZRFB 4W9HH 5JH5B 3OHVA 3M8VA 4W9GB 3ZTCB 2R9RB 3B84A 2OVPA 3E4UA 5FTAA 2PPIA 3WSOB 2Z8HA 4HXIA 4N9F5 4U2NA 2VKPA 4U2MA 5BO4C 4APFA 2P1OA 1FQVB 3LBZA 1R2BA 4BKTB 4CXIA 3C6OA 5EUPA 3OGLA 2FNJC 2OVQA 2P1NA 3DRXA 4JTAB 1A68A 3FKCA 4B9KE 3DCGB 4W9JB 2E32B 3KVTA 1FS2B 4ZOUA 4W9LB 4W9CB 3OHUA 2A79B 4CXJA 1DSXA 5BXDA 3DRYA 1S1GA 1CS3A 4JTDB 3HQIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3M4T A;  5DAD A;  5HZG C;  4AJY C;  1QDV A;  4EOZ A;  2P1M A;  4CP3 A;  1EOE A;  2IZV C;  1R28 A;  2IHC A;  3BIM A;  3OGM A;  4JTC B;  3HVE B;  4W9K B;  3MKS A;  4W9I B;  3V7D A;  3HU6 A;  1LQB B;  4CXT A;  3OGK A;  5H7H A;  3M5B A;  2I2R A;  2AST A;  2MA9 C;  1NN7 A;  4I6J C;  5BXB A;  3HVE A;  3ZNG B;  1FS1 B;  1R29 A;  5A15 A;  4B95 B;  1EXB E;  3LUT B;  2P1Q A;  5HYW B;  1EOD A;  4AWJ B;  2ASS A;  2NZ0 B;  3M52 A;  4BGC A;  4W9H B;  2OVR A;  1BUO A;  3ZRC B;  2YY9 A;  2Q81 A;  3ZTD B;  1T1D A;  4AP2 A;  4JGH C;  5LLI B;  1NEX A;  3C6N A;  1LM8 C;  3ZKJ B;  3I3N A;  4BKS B;  5DAF A;  1P22 B;  2C9W C;  1EOF A;  4CRH A;  1VCB B;  5BXH A;  2VPK A;  4UIJ A;  3L2O A;  4W9F B;  2JZ3 C;  3C6P A;  4W9E B;  4WQO C;  5H7G A;  2P1P A;  2NN2 A;  4W9D B;  2E31 B;  3GA1 A;  2IF5 A;  1LDK D;  3ZUN B;  4B9K B;  1QDW A;  4U77 A;  1HV2 A;  5A6R A;  4J8Z A;  4UYI A;  3DRZ A;  3LNM B;  5IBK A;  3HTM A;  3ZRF B;  4W9H H;  5JH5 B;  3OHV A;  3M8V A;  4W9G B;  3ZTC B;  2R9R B;  3B84 A;  2OVP A;  3E4U A;  5FTA A;  2PPI A;  3WSO B;  2Z8H A;  4HXI A;  4N9F 5;  4U2N A;  2VKP A;  4U2M A;  5BO4 C;  4APF A;  2P1O A;  1FQV B;  3LBZ A;  1R2B A;  4BKT B;  4CXI A;  3C6O A;  5EUP A;  3OGL A;  2FNJ C;  2OVQ A;  2P1N A;  4JTA B;  1A68 A;  3FKC A;  4B9K E;  3DCG B;  4W9J B;  2E32 B;  3KVT A;  1FS2 B;  4ZOU A;  4W9L B;  4W9C B;  3OHU A;  2A79 B;  4CXJ A;  1DSX A;  5BXD A;  1S1G A;  1CS3 A;  4JTD B;  3HQI A; 
#chains in the Genus database with same CATH topology
 3M4T A;  5DAD A;  5HZG C;  4AJY C;  1QDV A;  4EOZ A;  2P1M A;  4CP3 A;  1EOE A;  2IZV C;  1R28 A;  2IHC A;  3BIM A;  3OGM A;  4JTC B;  3HVE B;  4W9K B;  3MKS A;  4W9I B;  3V7D A;  3HU6 A;  1LQB B;  4CXT A;  3OGK A;  5H7H A;  3M5B A;  2I2R A;  2AST A;  2MA9 C;  1NN7 A;  4I6J C;  5BXB A;  3HVE A;  3ZNG B;  1FS1 B;  1R29 A;  5A15 A;  4B95 B;  1EXB E;  3LUT B;  2P1Q A;  5HYW B;  1EOD A;  4AWJ B;  2ASS A;  2NZ0 B;  3M52 A;  4BGC A;  4W9H B;  2OVR A;  1BUO A;  3ZRC B;  2YY9 A;  2Q81 A;  3ZTD B;  1T1D A;  4AP2 A;  4JGH C;  5LLI B;  1NEX A;  3C6N A;  1LM8 C;  4ZGC A;  3ZKJ B;  3I3N A;  4BKS B;  5DAF A;  1P22 B;  2C9W C;  1EOF A;  4CRH A;  1VCB B;  5BXH A;  2VPK A;  4UIJ A;  3L2O A;  4W9F B;  2JZ3 C;  3C6P A;  4W9E B;  4WQO C;  4YY8 A;  5H7G A;  2P1P A;  2NN2 A;  4W9D B;  2E31 B;  3GA1 A;  2IF5 A;  1LDK D;  3ZUN B;  4B9K B;  1QDW A;  4U77 A;  1HV2 A;  5A6R A;  4J8Z A;  4UYI A;  3DRZ A;  3LNM B;  5IBK A;  3HTM A;  3ZRF B;  4W9H H;  5JH5 B;  3OHV A;  3M8V A;  4W9G B;  3ZTC B;  2R9R B;  3B84 A;  2OVP A;  3E4U A;  5FTA A;  2PPI A;  3WSO B;  2Z8H A;  4HXI A;  4N9F 5;  4U2N A;  2VKP A;  4U2M A;  5BO4 C;  4APF A;  2P1O A;  1FQV B;  3LBZ A;  1R2B A;  4BKT B;  4CXI A;  3C6O A;  5EUP A;  3OGL A;  2FNJ C;  2OVQ A;  2P1N A;  3DRX A;  4JTA B;  1A68 A;  3FKC A;  4B9K E;  3DCG B;  4W9J B;  2E32 B;  3KVT A;  1FS2 B;  4ZOU A;  4W9L B;  4W9C B;  3OHU A;  2A79 B;  4CXJ A;  1DSX A;  5BXD A;  3DRY A;  1S1G A;  1CS3 A;  4JTD B;  3HQI A; 
#chains in the Genus database with same CATH homology
 3M4T A;  5DAD A;  5HZG C;  4AJY C;  1QDV A;  4EOZ A;  2P1M A;  4CP3 A;  1EOE A;  2IZV C;  1R28 A;  2IHC A;  3BIM A;  3OGM A;  4JTC B;  3HVE B;  4W9K B;  3MKS A;  4W9I B;  3V7D A;  3HU6 A;  1LQB B;  4CXT A;  3OGK A;  5H7H A;  3M5B A;  2I2R A;  2AST A;  2MA9 C;  1NN7 A;  4I6J C;  5BXB A;  3HVE A;  3ZNG B;  1FS1 B;  1R29 A;  5A15 A;  4B95 B;  1EXB E;  3LUT B;  2P1Q A;  5HYW B;  1EOD A;  4AWJ B;  2ASS A;  2NZ0 B;  3M52 A;  4BGC A;  4W9H B;  2OVR A;  1BUO A;  3ZRC B;  2YY9 A;  2Q81 A;  3ZTD B;  1T1D A;  4AP2 A;  4JGH C;  5LLI B;  1NEX A;  3C6N A;  1LM8 C;  4ZGC A;  3ZKJ B;  3I3N A;  4BKS B;  5DAF A;  1P22 B;  2C9W C;  1EOF A;  4CRH A;  1VCB B;  5BXH A;  2VPK A;  4UIJ A;  3L2O A;  4W9F B;  2JZ3 C;  3C6P A;  4W9E B;  4WQO C;  4YY8 A;  5H7G A;  2P1P A;  2NN2 A;  4W9D B;  2E31 B;  3GA1 A;  2IF5 A;  1LDK D;  3ZUN B;  4B9K B;  1QDW A;  4U77 A;  1HV2 A;  5A6R A;  4J8Z A;  4UYI A;  3DRZ A;  3LNM B;  5IBK A;  3HTM A;  3ZRF B;  4W9H H;  5JH5 B;  3OHV A;  3M8V A;  4W9G B;  3ZTC B;  2R9R B;  3B84 A;  2OVP A;  3E4U A;  5FTA A;  2PPI A;  3WSO B;  2Z8H A;  4HXI A;  4N9F 5;  4U2N A;  2VKP A;  4U2M A;  5BO4 C;  4APF A;  2P1O A;  1FQV B;  3LBZ A;  1R2B A;  4BKT B;  4CXI A;  3C6O A;  5EUP A;  3OGL A;  2FNJ C;  2OVQ A;  2P1N A;  3DRX A;  4JTA B;  1A68 A;  3FKC A;  4B9K E;  3DCG B;  4W9J B;  2E32 B;  3KVT A;  1FS2 B;  4ZOU A;  4W9L B;  4W9C B;  3OHU A;  2A79 B;  4CXJ A;  1DSX A;  5BXD A;  3DRY A;  1S1G A;  1CS3 A;  4JTD B;  3HQI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2P1PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations