2P1Q | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	156
structure length	124
Chain Sequence	KIVLKSSDGESFEVEEAVALESQTIAHMVDNGVPLPNVTSKILAKVIEYCKRHFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 124 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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124 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Arabidopsis thaliana
publication title	Mechanism of auxin perception by the TIR1 ubiquitin ligase. pubmed doi rcsb
molecule keywords	SKP1-like protein 1A
total genus	38
structure length	124
sequence length	156
ec nomenclature
pdb deposition date	2007-03-06

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01466	Skp1	Skp1 family, dimerisation domain
A	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	2p1qA00

3ZKJB 5LLIB 3ZTDB 4AWJB 1EODA 2P1OA 4CXJA 1QDWA 2IHCA 2IZVC 3C6NA 4CRHA 4BGCA 5H7GA 3LNMB 3LUTB 3ZRCB 4B9KB 5DAFA 4CXIA 1R2BA 3WSOB 1VCBB 2R9RB 3KVTA 1LDKD 3M52A 2MA9C 4W9IB 4W9JB 4W9EB 3DCGB 1T1DA 4U77A 4JGHC 3ZNGB 2PPIA 5A6RA 5IBKA 3OGMA 1FQVB 4APFA 5BXBA 3FKCA 2JZ3C 3HTMA 3E4UA 4W9CB 3LBZA 3OHVA 3M5BA 3OGKA 2OVQA 1R29A 5A15A 3GA1A 1S1GA 3BIMA 2OVPA 1R28A 5HYWB 2OVRA 4AJYC 4CXTA 2NZ0B 3HU6A 4J8ZA 1EXBE 2E32B 3DRZA 1LM8C 4UIJA 3M4TA 4W9LB 4W9HH 3HVEA 1P22B 5DADA 1LQBB 4W9FB 5BXDA 4BKSB 1CS3A 2ASTA 4CP3A 1A68A 2P1MA 4U2NA 5H7HA 4EOZA 2FNJC 2Q81A 4WQOC 4N9F5 3MKSA 5FTAA 4AP2A 2P1QA 4W9KB 5EUPA 1DSXA 2Z8HA 5JH5B 1EOFA 3HQIA 3ZRFB 3C6OA 5BXHA 4W9GB 2A79B 1FS1B 5HZGC 4B9KE 4HXIA 2E31B 3M8VA 4W9HB 3B84A 2P1PA 3ZTCB 4ZOUA 2C9WC 2P1NA 1EOEA 2NN2A 2ASSA 2YY9A 1FS2B 1NEXA 1NN7A 4U2MA 1HV2A 5BO4C 3V7DA 4JTCB 4BKTB 3C6PA 3OHUA 4JTDB 2IF5A 3HVEB 3L2OA 4UYIA 2I2RA 3ZUNB 3OGLA 1QDVA 4B95B 4W9DB 2VPKA 4I6JC 2VKPA 1BUOA 3I3NA 4JTAB
chains in the Genus database with same CATH superfamily

3ZKJB 5LLIB 3ZTDB 4AWJB 1EODA 2P1OA 4CXJA 1QDWA 2IHCA 2IZVC 3C6NA 4CRHA 4BGCA 5H7GA 3LNMB 3LUTB 3ZRCB 4B9KB 5DAFA 4CXIA 1R2BA 4ZGCA 3WSOB 1VCBB 2R9RB 3KVTA 1LDKD 3M52A 2MA9C 4W9IB 4W9JB 4W9EB 3DCGB 1T1DA 4U77A 4JGHC 3ZNGB 2PPIA 5A6RA 5IBKA 3OGMA 1FQVB 4APFA 5BXBA 3FKCA 2JZ3C 3HTMA 3E4UA 4W9CB 3LBZA 3OHVA 3M5BA 3OGKA 2OVQA 1R29A 5A15A 3GA1A 1S1GA 3BIMA 2OVPA 1R28A 5HYWB 2OVRA 4AJYC 4CXTA 2NZ0B 3HU6A 4J8ZA 1EXBE 2E32B 3DRZA 1LM8C 3DRXA 4UIJA 3M4TA 4W9LB 4W9HH 3HVEA 1P22B 5DADA 1LQBB 4W9FB 5BXDA 4BKSB 1CS3A 2ASTA 4CP3A 1A68A 2P1MA 4U2NA 5H7HA 4EOZA 2FNJC 2Q81A 4WQOC 4N9F5 3MKSA 5FTAA 4AP2A 2P1QA 4W9KB 5EUPA 1DSXA 2Z8HA 5JH5B 1EOFA 3HQIA 3ZRFB 3C6OA 5BXHA 4W9GB 2A79B 1FS1B 5HZGC 4B9KE 4HXIA 2E31B 3M8VA 4W9HB 3B84A 3DRYA 2P1PA 3ZTCB 4ZOUA 2C9WC 2P1NA 1EOEA 2NN2A 2ASSA 2YY9A 1FS2B 1NEXA 1NN7A 4U2MA 1HV2A 5BO4C 3V7DA 4JTCB 4BKTB 3C6PA 3OHUA 4JTDB 2IF5A 3HVEB 3L2OA 4UYIA 2I2RA 3ZUNB 3OGLA 1QDVA 4B95B 4W9DB 2VPKA 4I6JC 2VKPA 4YY8A 1BUOA 3I3NA 4JTAB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3ZKJ B;  5LLI B;  3ZTD B;  4AWJ B;  1EOD A;  2P1O A;  4CXJ A;  1QDW A;  2IHC A;  2IZV C;  3C6N A;  4CRH A;  4BGC A;  5H7G A;  3LNM B;  3LUT B;  3ZRC B;  4B9K B;  5DAF A;  4CXI A;  1R2B A;  3WSO B;  1VCB B;  2R9R B;  3KVT A;  1LDK D;  3M52 A;  2MA9 C;  4W9I B;  4W9J B;  4W9E B;  3DCG B;  1T1D A;  4U77 A;  4JGH C;  3ZNG B;  2PPI A;  5A6R A;  5IBK A;  3OGM A;  1FQV B;  4APF A;  5BXB A;  3FKC A;  2JZ3 C;  3HTM A;  3E4U A;  4W9C B;  3LBZ A;  3OHV A;  3M5B A;  3OGK A;  2OVQ A;  1R29 A;  5A15 A;  3GA1 A;  1S1G A;  3BIM A;  2OVP A;  1R28 A;  5HYW B;  2OVR A;  4AJY C;  4CXT A;  2NZ0 B;  3HU6 A;  4J8Z A;  1EXB E;  2E32 B;  3DRZ A;  1LM8 C;  4UIJ A;  3M4T A;  4W9L B;  4W9H H;  3HVE A;  1P22 B;  5DAD A;  1LQB B;  4W9F B;  5BXD A;  4BKS B;  1CS3 A;  2AST A;  4CP3 A;  1A68 A;  2P1M A;  4U2N A;  5H7H A;  4EOZ A;  2FNJ C;  2Q81 A;  4WQO C;  4N9F 5;  3MKS A;  5FTA A;  4AP2 A;  2P1Q A;  4W9K B;  5EUP A;  1DSX A;  2Z8H A;  5JH5 B;  1EOF A;  3HQI A;  3ZRF B;  3C6O A;  5BXH A;  4W9G B;  2A79 B;  1FS1 B;  5HZG C;  4B9K E;  4HXI A;  2E31 B;  3M8V A;  4W9H B;  3B84 A;  2P1P A;  3ZTC B;  4ZOU A;  2C9W C;  2P1N A;  1EOE A;  2NN2 A;  2ASS A;  2YY9 A;  1FS2 B;  1NEX A;  1NN7 A;  4U2M A;  1HV2 A;  5BO4 C;  3V7D A;  4JTC B;  4BKT B;  3C6P A;  3OHU A;  4JTD B;  2IF5 A;  3HVE B;  3L2O A;  4UYI A;  2I2R A;  3ZUN B;  3OGL A;  1QDV A;  4B95 B;  4W9D B;  2VPK A;  4I6J C;  2VKP A;  1BUO A;  3I3N A;  4JTA B; 
#chains in the Genus database with same CATH topology
 3ZKJ B;  5LLI B;  3ZTD B;  4AWJ B;  1EOD A;  2P1O A;  4CXJ A;  1QDW A;  2IHC A;  2IZV C;  3C6N A;  4CRH A;  4BGC A;  5H7G A;  3LNM B;  3LUT B;  3ZRC B;  4B9K B;  5DAF A;  4CXI A;  1R2B A;  4ZGC A;  3WSO B;  1VCB B;  2R9R B;  3KVT A;  1LDK D;  3M52 A;  2MA9 C;  4W9I B;  4W9J B;  4W9E B;  3DCG B;  1T1D A;  4U77 A;  4JGH C;  3ZNG B;  2PPI A;  5A6R A;  5IBK A;  3OGM A;  1FQV B;  4APF A;  5BXB A;  3FKC A;  2JZ3 C;  3HTM A;  3E4U A;  4W9C B;  3LBZ A;  3OHV A;  3M5B A;  3OGK A;  2OVQ A;  1R29 A;  5A15 A;  3GA1 A;  1S1G A;  3BIM A;  2OVP A;  1R28 A;  5HYW B;  2OVR A;  4AJY C;  4CXT A;  2NZ0 B;  3HU6 A;  4J8Z A;  1EXB E;  2E32 B;  3DRZ A;  1LM8 C;  3DRX A;  4UIJ A;  3M4T A;  4W9L B;  4W9H H;  3HVE A;  1P22 B;  5DAD A;  1LQB B;  4W9F B;  5BXD A;  4BKS B;  1CS3 A;  2AST A;  4CP3 A;  1A68 A;  2P1M A;  4U2N A;  5H7H A;  4EOZ A;  2FNJ C;  2Q81 A;  4WQO C;  4N9F 5;  3MKS A;  5FTA A;  4AP2 A;  2P1Q A;  4W9K B;  5EUP A;  1DSX A;  2Z8H A;  5JH5 B;  1EOF A;  3HQI A;  3ZRF B;  3C6O A;  5BXH A;  4W9G B;  2A79 B;  1FS1 B;  5HZG C;  4B9K E;  4HXI A;  2E31 B;  3M8V A;  4W9H B;  3B84 A;  3DRY A;  2P1P A;  3ZTC B;  4ZOU A;  2C9W C;  2P1N A;  1EOE A;  2NN2 A;  2ASS A;  2YY9 A;  1FS2 B;  1NEX A;  1NN7 A;  4U2M A;  1HV2 A;  5BO4 C;  3V7D A;  4JTC B;  4BKT B;  3C6P A;  3OHU A;  4JTD B;  2IF5 A;  3HVE B;  3L2O A;  4UYI A;  2I2R A;  3ZUN B;  3OGL A;  1QDV A;  4B95 B;  4W9D B;  2VPK A;  4I6J C;  2VKP A;  4YY8 A;  1BUO A;  3I3N A;  4JTA B; 
#chains in the Genus database with same CATH homology
 3ZKJ B;  5LLI B;  3ZTD B;  4AWJ B;  1EOD A;  2P1O A;  4CXJ A;  1QDW A;  2IHC A;  2IZV C;  3C6N A;  4CRH A;  4BGC A;  5H7G A;  3LNM B;  3LUT B;  3ZRC B;  4B9K B;  5DAF A;  4CXI A;  1R2B A;  4ZGC A;  3WSO B;  1VCB B;  2R9R B;  3KVT A;  1LDK D;  3M52 A;  2MA9 C;  4W9I B;  4W9J B;  4W9E B;  3DCG B;  1T1D A;  4U77 A;  4JGH C;  3ZNG B;  2PPI A;  5A6R A;  5IBK A;  3OGM A;  1FQV B;  4APF A;  5BXB A;  3FKC A;  2JZ3 C;  3HTM A;  3E4U A;  4W9C B;  3LBZ A;  3OHV A;  3M5B A;  3OGK A;  2OVQ A;  1R29 A;  5A15 A;  3GA1 A;  1S1G A;  3BIM A;  2OVP A;  1R28 A;  5HYW B;  2OVR A;  4AJY C;  4CXT A;  2NZ0 B;  3HU6 A;  4J8Z A;  1EXB E;  2E32 B;  3DRZ A;  1LM8 C;  3DRX A;  4UIJ A;  3M4T A;  4W9L B;  4W9H H;  3HVE A;  1P22 B;  5DAD A;  1LQB B;  4W9F B;  5BXD A;  4BKS B;  1CS3 A;  2AST A;  4CP3 A;  1A68 A;  2P1M A;  4U2N A;  5H7H A;  4EOZ A;  2FNJ C;  2Q81 A;  4WQO C;  4N9F 5;  3MKS A;  5FTA A;  4AP2 A;  2P1Q A;  4W9K B;  5EUP A;  1DSX A;  2Z8H A;  5JH5 B;  1EOF A;  3HQI A;  3ZRF B;  3C6O A;  5BXH A;  4W9G B;  2A79 B;  1FS1 B;  5HZG C;  4B9K E;  4HXI A;  2E31 B;  3M8V A;  4W9H B;  3B84 A;  3DRY A;  2P1P A;  3ZTC B;  4ZOU A;  2C9W C;  2P1N A;  1EOE A;  2NN2 A;  2ASS A;  2YY9 A;  1FS2 B;  1NEX A;  1NN7 A;  4U2M A;  1HV2 A;  5BO4 C;  3V7D A;  4JTC B;  4BKT B;  3C6P A;  3OHU A;  4JTD B;  2IF5 A;  3HVE B;  3L2O A;  4UYI A;  2I2R A;  3ZUN B;  3OGL A;  1QDV A;  4B95 B;  4W9D B;  2VPK A;  4I6J C;  2VKP A;  4YY8 A;  1BUO A;  3I3N A;  4JTA B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2P1QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations