2PPI | Genus

Total Genus 30

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	125
structure length	118
Chain Sequence	YFQSMAVSDPQHAARLLRALSSFRERFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Homo sapiens
publication title	Structure of the BTB (Tramtrack and Bric a brac) domain of human Gigaxonin. rcsb
molecule keywords	Gigaxonin
total genus	30
structure length	118
sequence length	125
ec nomenclature
pdb deposition date	2007-04-30

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	2ppiA01

3M8VA 4I6JC 3C6NA 2VPKA 4BGCA 5JH5B 1P22B 1R28A 2ASSA 5IBKA 3OHVA 3OGMA 4B9KB 1EOEA 2Z8HA 2IHCA 1CS3A 4U2NA 1R29A 1LQBB 5EUPA 5LLIB 3HU6A 2OVRA 2R9RB 4JTCB 1QDWA 3ZRFB 4U2MA 3ZRCB 3DRZA 3GA1A 1NEXA 4ZOUA 2VKPA 4N9F5 4UIJA 2IF5A 5H7GA 1EOFA 5HYWB 1T1DA 4BKSB 3LNMB 2YY9A 4APFA 1VCBB 5DAFA 4W9GB 1FQVB 5BXBA 2OVQA 3M5BA 3MKSA 4U77A 1DSXA 3OGLA 4AWJB 5BXDA 3C6PA 4CXTA 4W9IB 2C9WC 2E32B 3LUTB 2P1PA 3V7DA 3ZTCB 5FTAA 1FS1B 2PPIA 3E4UA 4W9JB 3M4TA 2E31B 3BIMA 4CP3A 3HTMA 4BKTB 4UYIA 4W9EB 4HXIA 2FNJC 2Q81A 4CXIA 5H7HA 3KVTA 1BUOA 3B84A 4WQOC 1HV2A 3M52A 3ZKJB 5BXHA 3DCGB 4JGHC 5BO4C 4W9CB 4CXJA 3OGKA 4W9HH 5A6RA 1S1GA 4JTAB 3ZTDB 1NN7A 2I2RA 2MA9C 2P1QA 3HVEB 2P1NA 4EOZA 2IZVC 2P1MA 5A15A 3OHUA 1A68A 3HVEA 1LM8C 4W9KB 3C6OA 3HQIA 5DADA 3L2OA 3LBZA 4J8ZA 1R2BA 4JTDB 3ZNGB 2NN2A 4CRHA 1LDKD 2NZ0B 1FS2B 1QDVA 4AP2A 3FKCA 4AJYC 4W9LB 4W9HB 3I3NA 2OVPA 1EODA 1EXBE 3ZUNB 2A79B 3WSOB 4B9KE 4W9DB 2ASTA 2JZ3C 5HZGC 4W9FB 2P1OA 4B95B
chains in the Genus database with same CATH superfamily

3M8VA 4I6JC 3C6NA 2VPKA 4BGCA 5JH5B 1P22B 1R28A 2ASSA 5IBKA 3OHVA 3OGMA 4B9KB 1EOEA 2Z8HA 2IHCA 1CS3A 4YY8A 4U2NA 1R29A 1LQBB 5EUPA 5LLIB 3HU6A 2OVRA 2R9RB 4JTCB 1QDWA 3ZRFB 4U2MA 3ZRCB 3DRZA 3GA1A 1NEXA 4ZOUA 2VKPA 4N9F5 4UIJA 2IF5A 5H7GA 4ZGCA 1EOFA 5HYWB 1T1DA 4BKSB 3LNMB 2YY9A 4APFA 1VCBB 5DAFA 4W9GB 1FQVB 5BXBA 2OVQA 3M5BA 3MKSA 4U77A 1DSXA 3OGLA 4AWJB 5BXDA 3C6PA 4CXTA 4W9IB 2C9WC 2E32B 3LUTB 2P1PA 3V7DA 3ZTCB 5FTAA 1FS1B 2PPIA 3E4UA 4W9JB 3M4TA 2E31B 3BIMA 4CP3A 3HTMA 4BKTB 4UYIA 4W9EB 4HXIA 2FNJC 2Q81A 4CXIA 5H7HA 3KVTA 1BUOA 3B84A 4WQOC 1HV2A 3DRYA 3M52A 3ZKJB 5BXHA 3DCGB 4JGHC 5BO4C 4W9CB 4CXJA 3OGKA 4W9HH 5A6RA 1S1GA 4JTAB 3ZTDB 1NN7A 2I2RA 2MA9C 2P1QA 3HVEB 2P1NA 4EOZA 2IZVC 2P1MA 5A15A 3OHUA 1A68A 3HVEA 1LM8C 4W9KB 3C6OA 3HQIA 5DADA 3L2OA 3DRXA 3LBZA 4J8ZA 1R2BA 4JTDB 3ZNGB 2NN2A 4CRHA 1LDKD 2NZ0B 1FS2B 1QDVA 4AP2A 3FKCA 4AJYC 4W9LB 4W9HB 3I3NA 2OVPA 1EODA 1EXBE 3ZUNB 2A79B 3WSOB 4B9KE 4W9DB 2ASTA 2JZ3C 5HZGC 4W9FB 2P1OA 4B95B
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3M8V A;  4I6J C;  3C6N A;  2VPK A;  4BGC A;  5JH5 B;  1P22 B;  1R28 A;  2ASS A;  5IBK A;  3OHV A;  3OGM A;  4B9K B;  1EOE A;  2Z8H A;  2IHC A;  1CS3 A;  4U2N A;  1R29 A;  1LQB B;  5EUP A;  5LLI B;  3HU6 A;  2OVR A;  2R9R B;  4JTC B;  1QDW A;  3ZRF B;  4U2M A;  3ZRC B;  3DRZ A;  3GA1 A;  1NEX A;  4ZOU A;  2VKP A;  4N9F 5;  4UIJ A;  2IF5 A;  5H7G A;  1EOF A;  5HYW B;  1T1D A;  4BKS B;  3LNM B;  2YY9 A;  4APF A;  1VCB B;  5DAF A;  4W9G B;  1FQV B;  5BXB A;  2OVQ A;  3M5B A;  3MKS A;  4U77 A;  1DSX A;  3OGL A;  4AWJ B;  5BXD A;  3C6P A;  4CXT A;  4W9I B;  2C9W C;  2E32 B;  3LUT B;  2P1P A;  3V7D A;  3ZTC B;  5FTA A;  1FS1 B;  2PPI A;  3E4U A;  4W9J B;  3M4T A;  2E31 B;  3BIM A;  4CP3 A;  3HTM A;  4BKT B;  4UYI A;  4W9E B;  4HXI A;  2FNJ C;  2Q81 A;  4CXI A;  5H7H A;  3KVT A;  1BUO A;  3B84 A;  4WQO C;  1HV2 A;  3M52 A;  3ZKJ B;  5BXH A;  3DCG B;  4JGH C;  5BO4 C;  4W9C B;  4CXJ A;  3OGK A;  4W9H H;  5A6R A;  1S1G A;  4JTA B;  3ZTD B;  1NN7 A;  2I2R A;  2MA9 C;  2P1Q A;  3HVE B;  2P1N A;  4EOZ A;  2IZV C;  2P1M A;  5A15 A;  3OHU A;  1A68 A;  3HVE A;  1LM8 C;  4W9K B;  3C6O A;  3HQI A;  5DAD A;  3L2O A;  3LBZ A;  4J8Z A;  1R2B A;  4JTD B;  3ZNG B;  2NN2 A;  4CRH A;  1LDK D;  2NZ0 B;  1FS2 B;  1QDV A;  4AP2 A;  3FKC A;  4AJY C;  4W9L B;  4W9H B;  3I3N A;  2OVP A;  1EOD A;  1EXB E;  3ZUN B;  2A79 B;  3WSO B;  4B9K E;  4W9D B;  2AST A;  2JZ3 C;  5HZG C;  4W9F B;  2P1O A;  4B95 B; 
#chains in the Genus database with same CATH topology
 3M8V A;  4I6J C;  3C6N A;  2VPK A;  4BGC A;  5JH5 B;  1P22 B;  1R28 A;  2ASS A;  5IBK A;  3OHV A;  3OGM A;  4B9K B;  1EOE A;  2Z8H A;  2IHC A;  1CS3 A;  4YY8 A;  4U2N A;  1R29 A;  1LQB B;  5EUP A;  5LLI B;  3HU6 A;  2OVR A;  2R9R B;  4JTC B;  1QDW A;  3ZRF B;  4U2M A;  3ZRC B;  3DRZ A;  3GA1 A;  1NEX A;  4ZOU A;  2VKP A;  4N9F 5;  4UIJ A;  2IF5 A;  5H7G A;  4ZGC A;  1EOF A;  5HYW B;  1T1D A;  4BKS B;  3LNM B;  2YY9 A;  4APF A;  1VCB B;  5DAF A;  4W9G B;  1FQV B;  5BXB A;  2OVQ A;  3M5B A;  3MKS A;  4U77 A;  1DSX A;  3OGL A;  4AWJ B;  5BXD A;  3C6P A;  4CXT A;  4W9I B;  2C9W C;  2E32 B;  3LUT B;  2P1P A;  3V7D A;  3ZTC B;  5FTA A;  1FS1 B;  2PPI A;  3E4U A;  4W9J B;  3M4T A;  2E31 B;  3BIM A;  4CP3 A;  3HTM A;  4BKT B;  4UYI A;  4W9E B;  4HXI A;  2FNJ C;  2Q81 A;  4CXI A;  5H7H A;  3KVT A;  1BUO A;  3B84 A;  4WQO C;  1HV2 A;  3DRY A;  3M52 A;  3ZKJ B;  5BXH A;  3DCG B;  4JGH C;  5BO4 C;  4W9C B;  4CXJ A;  3OGK A;  4W9H H;  5A6R A;  1S1G A;  4JTA B;  3ZTD B;  1NN7 A;  2I2R A;  2MA9 C;  2P1Q A;  3HVE B;  2P1N A;  4EOZ A;  2IZV C;  2P1M A;  5A15 A;  3OHU A;  1A68 A;  3HVE A;  1LM8 C;  4W9K B;  3C6O A;  3HQI A;  5DAD A;  3L2O A;  3DRX A;  3LBZ A;  4J8Z A;  1R2B A;  4JTD B;  3ZNG B;  2NN2 A;  4CRH A;  1LDK D;  2NZ0 B;  1FS2 B;  1QDV A;  4AP2 A;  3FKC A;  4AJY C;  4W9L B;  4W9H B;  3I3N A;  2OVP A;  1EOD A;  1EXB E;  3ZUN B;  2A79 B;  3WSO B;  4B9K E;  4W9D B;  2AST A;  2JZ3 C;  5HZG C;  4W9F B;  2P1O A;  4B95 B; 
#chains in the Genus database with same CATH homology
 3M8V A;  4I6J C;  3C6N A;  2VPK A;  4BGC A;  5JH5 B;  1P22 B;  1R28 A;  2ASS A;  5IBK A;  3OHV A;  3OGM A;  4B9K B;  1EOE A;  2Z8H A;  2IHC A;  1CS3 A;  4YY8 A;  4U2N A;  1R29 A;  1LQB B;  5EUP A;  5LLI B;  3HU6 A;  2OVR A;  2R9R B;  4JTC B;  1QDW A;  3ZRF B;  4U2M A;  3ZRC B;  3DRZ A;  3GA1 A;  1NEX A;  4ZOU A;  2VKP A;  4N9F 5;  4UIJ A;  2IF5 A;  5H7G A;  4ZGC A;  1EOF A;  5HYW B;  1T1D A;  4BKS B;  3LNM B;  2YY9 A;  4APF A;  1VCB B;  5DAF A;  4W9G B;  1FQV B;  5BXB A;  2OVQ A;  3M5B A;  3MKS A;  4U77 A;  1DSX A;  3OGL A;  4AWJ B;  5BXD A;  3C6P A;  4CXT A;  4W9I B;  2C9W C;  2E32 B;  3LUT B;  2P1P A;  3V7D A;  3ZTC B;  5FTA A;  1FS1 B;  2PPI A;  3E4U A;  4W9J B;  3M4T A;  2E31 B;  3BIM A;  4CP3 A;  3HTM A;  4BKT B;  4UYI A;  4W9E B;  4HXI A;  2FNJ C;  2Q81 A;  4CXI A;  5H7H A;  3KVT A;  1BUO A;  3B84 A;  4WQO C;  1HV2 A;  3DRY A;  3M52 A;  3ZKJ B;  5BXH A;  3DCG B;  4JGH C;  5BO4 C;  4W9C B;  4CXJ A;  3OGK A;  4W9H H;  5A6R A;  1S1G A;  4JTA B;  3ZTD B;  1NN7 A;  2I2R A;  2MA9 C;  2P1Q A;  3HVE B;  2P1N A;  4EOZ A;  2IZV C;  2P1M A;  5A15 A;  3OHU A;  1A68 A;  3HVE A;  1LM8 C;  4W9K B;  3C6O A;  3HQI A;  5DAD A;  3L2O A;  3DRX A;  3LBZ A;  4J8Z A;  1R2B A;  4JTD B;  3ZNG B;  2NN2 A;  4CRH A;  1LDK D;  2NZ0 B;  1FS2 B;  1QDV A;  4AP2 A;  3FKC A;  4AJY C;  4W9L B;  4W9H B;  3I3N A;  2OVP A;  1EOD A;  1EXB E;  3ZUN B;  2A79 B;  3WSO B;  4B9K E;  4W9D B;  2AST A;  2JZ3 C;  5HZG C;  4W9F B;  2P1O A;  4B95 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2PPIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN