2V6V | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	135
structure length	135
Chain Sequence	KLVDGELLVKASVESFGLEDEKYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYVTNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFDREFER

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 135 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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135 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Regulator
source organism	Saccharomyces cerevisiae
publication title	Structural and Membrane Binding Analysis of the Phox Homology Domain of Bem1P: Basis of Phosphatidylinositol 4-Phosphate Specificity. pubmed doi rcsb
molecule keywords	BUD EMERGENCE PROTEIN 1
total genus	33
structure length	135
sequence length	135
chains with identical sequence	B
ec nomenclature
pdb deposition date	2007-07-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	2v6vA00

3FOGA 3HPBA 4OXWA 4IKDA 1OCSA 4AKVA 2CZOA 4PQPA 2DYBA 3IQ2A 1H6HA 4IKBB 2REDA 1OCUA 4IKBA 4ON3A 2YPSA 2IWLX 4PZGA 4HASA 2AR5A 1GD5A 4P2IA 4AZ9A 1KQ6A 2L73A 2V14A 2RAKA 3P0CA 3LUIA 4PQOA 2WWEA 2CSKA 2REAA 2RAJA 2ETTA 2RAIA 1XTNA 1KMDA 1XTEA 4P2JA 2V6VA 3HPCX 3DYTA 4BGJA 2I4KA 1O7KA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3FOG A;  3HPB A;  4OXW A;  4IKD A;  1OCS A;  4AKV A;  2CZO A;  4PQP A;  2DYB A;  3IQ2 A;  1H6H A;  4IKB B;  2RED A;  1OCU A;  4IKB A;  4ON3 A;  2YPS A;  2IWL X;  4PZG A;  4HAS A;  2AR5 A;  1GD5 A;  4P2I A;  4AZ9 A;  1KQ6 A;  2L73 A;  2V14 A;  2RAK A;  3P0C A;  3LUI A;  4PQO A;  2WWE A;  2CSK A;  2REA A;  2RAJ A;  2ETT A;  2RAI A;  1XTN A;  1KMD A;  1XTE A;  4P2J A;  2V6V A;  3HPC X;  3DYT A;  4BGJ A;  2I4K A;  1O7K A; 
#chains in the Genus database with same CATH topology
 3FOG A;  3HPB A;  4OXW A;  4IKD A;  1OCS A;  4AKV A;  2CZO A;  4PQP A;  2DYB A;  3IQ2 A;  1H6H A;  4IKB B;  2RED A;  1OCU A;  4IKB A;  4ON3 A;  2YPS A;  2IWL X;  4PZG A;  4HAS A;  2AR5 A;  1GD5 A;  4P2I A;  4AZ9 A;  1KQ6 A;  2L73 A;  2V14 A;  2RAK A;  3P0C A;  3LUI A;  4PQO A;  2WWE A;  2CSK A;  2REA A;  2RAJ A;  2ETT A;  2RAI A;  1XTN A;  1KMD A;  1XTE A;  4P2J A;  2V6V A;  3HPC X;  3DYT A;  4BGJ A;  2I4K A;  1O7K A; 
#chains in the Genus database with same CATH homology
 3FOG A;  3HPB A;  4OXW A;  4IKD A;  1OCS A;  4AKV A;  2CZO A;  4PQP A;  2DYB A;  3IQ2 A;  1H6H A;  4IKB B;  2RED A;  1OCU A;  4IKB A;  4ON3 A;  2YPS A;  2IWL X;  4PZG A;  4HAS A;  2AR5 A;  1GD5 A;  4P2I A;  4AZ9 A;  1KQ6 A;  2L73 A;  2V14 A;  2RAK A;  3P0C A;  3LUI A;  4PQO A;  2WWE A;  2CSK A;  2REA A;  2RAJ A;  2ETT A;  2RAI A;  1XTN A;  1KMD A;  1XTE A;  4P2J A;  2V6V A;  3HPC X;  3DYT A;  4BGJ A;  2I4K A;  1O7K A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2V6VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations