2VSWA

The structure of the rhodanese domain of the human dual specificity phosphatase 16
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
134
structure length
134
Chain Sequence
MIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of the Rhodanese Domain of the Human Dual Specifity Phosphatase 16
rcsb
molecule tags Hydrolase
source organism Homo sapiens
molecule keywords DUAL SPECIFICITY PROTEIN PHOSPHATASE 16
total genus 44
structure length 134
sequence length 134
chains with identical sequence B
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2008-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 2vswA00
2GWFA 1QB0A 4OCGA 3ICRA 2MRMA 2HHGA 2ORAA 1CWRA 2FSXA 1T3KA 3FLHA 1VEEA 5LAOA 3TP9A 1RHSA 4F67A 1BOHA 1CWSA 5LAMA 3AAXA 1UARA 3HZUA 3ICSA 1YMDA 3OP3A 1WV9A 2DCQA 3NTAA 1QXNA 2IFDA 2J6PA 2JTQA 2OUCA 3OLHA 1URHA 3P3AA 2UZQA 1GN0A 3R2UA 2EG4A 3I3UA 4JGTA 2VSWA 3IWHA 2MOLA 2KL3A 5HBQA 2JTSA 1HZMA 3D1PA 3HWIA 4WH7A 1DP2A 3TG1B 5HPAA 1YS0A 3NHVA 1RHDA 1YM9A 1BOIA 2MOIA 1YT8A 3AAYA 2IFVA 1TQ1A 1CWTA 3ILMA 4WH9A 3IPOA 3FOJA 2EG4B 3FS5A 3GK5A 3TG3A 2A2KA 1GMXA 3I2VA 3G5JA 3NTDA 3MZZA 5HBLA 3K9RA 1OKGA 1H4MX 3F4AA 2K0ZA 3FNJA 1ORBA 3HIXA 3UTNX 1E0CA 2JTRA 2WLXA 3O3WA 3IPPA 1WHBA 1YMLA 1YMKA 2EG3A 3NT6A 2WLRA 5HBPA 1H4KX 3ICTA 1C25A 5HBOA
chains in the Genus database with same CATH superfamily
2GWFA 1QB0A 4OCGA 3ICRA 2MRMA 2HHGA 2ORAA 1CWRA 2FSXA 1T3KA 3FLHA 1VEEA 5LAOA 3TP9A 1RHSA 4F67A 1BOHA 1CWSA 5LAMA 3AAXA 1UARA 3HZUA 3ICSA 1YMDA 3OP3A 1WV9A 2DCQA 3NTAA 1QXNA 2IFDA 2J6PA 2JTQA 2OUCA 3OLHA 1URHA 3P3AA 2UZQA 1GN0A 3R2UA 2EG4A 3I3UA 4JGTA 2VSWA 3IWHA 2MOLA 2KL3A 5HBQA 2JTSA 1HZMA 3D1PA 3HWIA 4WH7A 1DP2A 3TG1B 5HPAA 1YS0A 3NHVA 1RHDA 1YM9A 1BOIA 2MOIA 1YT8A 3AAYA 2IFVA 1TQ1A 1CWTA 3ILMA 4WH9A 3IPOA 3FOJA 2EG4B 3FS5A 3GK5A 3TG3A 2A2KA 1GMXA 3I2VA 3G5JA 3NTDA 3MZZA 5HBLA 3K9RA 1OKGA 1H4MX 3F4AA 2K0ZA 3FNJA 1ORBA 3HIXA 3UTNX 1E0CA 2JTRA 2WLXA 3O3WA 3IPPA 1WHBA 1YMLA 1YMKA 2EG3A 3NT6A 2Q82A 2WLRA 5HBPA 1H4KX 3ICTA 1C25A 5HBOA
chains in the Genus database with same CATH topology
2GWFA 1QB0A 4OCGA 3ICRA 2MRMA 2HHGA 2ORAA 1CWRA 2FSXA 1T3KA 3FLHA 1VEEA 5LAOA 3TP9A 1RHSA 4F67A 1BOHA 1CWSA 5LAMA 3AAXA 1UARA 3HZUA 3ICSA 1YMDA 3OP3A 1WV9A 2DCQA 3NTAA 1QXNA 2IFDA 2J6PA 2JTQA 2OUCA 3OLHA 1URHA 3P3AA 2UZQA 1GN0A 3R2UA 2EG4A 3I3UA 4JGTA 2VSWA 3IWHA 2MOLA 2KL3A 5HBQA 2JTSA 1HZMA 3D1PA 3HWIA 4WH7A 1DP2A 3TG1B 5HPAA 1YS0A 3NHVA 1RHDA 1YM9A 1BOIA 2MOIA 1YT8A 3AAYA 2IFVA 1TQ1A 1CWTA 3ILMA 4WH9A 3IPOA 3FOJA 2EG4B 3FS5A 3GK5A 3TG3A 2A2KA 1GMXA 3I2VA 3G5JA 3NTDA 3MZZA 5HBLA 3K9RA 1OKGA 1H4MX 3F4AA 2K0ZA 3FNJA 1ORBA 3HIXA 3UTNX 1E0CA 2JTRA 2WLXA 3O3WA 3IPPA 1WHBA 1YMLA 1YMKA 2EG3A 3NT6A 2WLRA 5HBPA 1H4KX 3ICTA 1C25A 5HBOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GWF A;  1QB0 A;  4OCG A;  3ICR A;  2MRM A;  2HHG A;  2ORA A;  1CWR A;  2FSX A;  1T3K A;  3FLH A;  1VEE A;  5LAO A;  3TP9 A;  1RHS A;  4F67 A;  1BOH A;  1CWS A;  5LAM A;  3AAX A;  1UAR A;  3HZU A;  3ICS A;  1YMD A;  3OP3 A;  1WV9 A;  2DCQ A;  3NTA A;  1QXN A;  2IFD A;  2J6P A;  2JTQ A;  2OUC A;  3OLH A;  1URH A;  3P3A A;  2UZQ A;  1GN0 A;  3R2U A;  2EG4 A;  3I3U A;  4JGT A;  2VSW A;  3IWH A;  2MOL A;  2KL3 A;  5HBQ A;  2JTS A;  1HZM A;  3D1P A;  3HWI A;  4WH7 A;  1DP2 A;  3TG1 B;  5HPA A;  1YS0 A;  3NHV A;  1RHD A;  1YM9 A;  1BOI A;  2MOI A;  1YT8 A;  3AAY A;  2IFV A;  1TQ1 A;  1CWT A;  3ILM A;  4WH9 A;  3IPO A;  3FOJ A;  2EG4 B;  3FS5 A;  3GK5 A;  3TG3 A;  2A2K A;  1GMX A;  3I2V A;  3G5J A;  3NTD A;  3MZZ A;  5HBL A;  3K9R A;  1OKG A;  1H4M X;  3F4A A;  2K0Z A;  3FNJ A;  1ORB A;  3HIX A;  3UTN X;  1E0C A;  2JTR A;  2WLX A;  3O3W A;  3IPP A;  1WHB A;  1YML A;  1YMK A;  2EG3 A;  3NT6 A;  2WLR A;  5HBP A;  1H4K X;  3ICT A;  1C25 A;  5HBO A; 
#chains in the Genus database with same CATH topology
 2GWF A;  1QB0 A;  4OCG A;  3ICR A;  2MRM A;  2HHG A;  2ORA A;  1CWR A;  2FSX A;  1T3K A;  3FLH A;  1VEE A;  5LAO A;  3TP9 A;  1RHS A;  4F67 A;  1BOH A;  1CWS A;  5LAM A;  3AAX A;  1UAR A;  3HZU A;  3ICS A;  1YMD A;  3OP3 A;  1WV9 A;  2DCQ A;  3NTA A;  1QXN A;  2IFD A;  2J6P A;  2JTQ A;  2OUC A;  3OLH A;  1URH A;  3P3A A;  2UZQ A;  1GN0 A;  3R2U A;  2EG4 A;  3I3U A;  4JGT A;  2VSW A;  3IWH A;  2MOL A;  2KL3 A;  5HBQ A;  2JTS A;  1HZM A;  3D1P A;  3HWI A;  4WH7 A;  1DP2 A;  3TG1 B;  5HPA A;  1YS0 A;  3NHV A;  1RHD A;  1YM9 A;  1BOI A;  2MOI A;  1YT8 A;  3AAY A;  2IFV A;  1TQ1 A;  1CWT A;  3ILM A;  4WH9 A;  3IPO A;  3FOJ A;  2EG4 B;  3FS5 A;  3GK5 A;  3TG3 A;  2A2K A;  1GMX A;  3I2V A;  3G5J A;  3NTD A;  3MZZ A;  5HBL A;  3K9R A;  1OKG A;  1H4M X;  3F4A A;  2K0Z A;  3FNJ A;  1ORB A;  3HIX A;  3UTN X;  1E0C A;  2JTR A;  2WLX A;  3O3W A;  3IPP A;  1WHB A;  1YML A;  1YMK A;  2EG3 A;  3NT6 A;  2Q82 A;  2WLR A;  5HBP A;  1H4K X;  3ICT A;  1C25 A;  5HBO A; 
#chains in the Genus database with same CATH homology
 2GWF A;  1QB0 A;  4OCG A;  3ICR A;  2MRM A;  2HHG A;  2ORA A;  1CWR A;  2FSX A;  1T3K A;  3FLH A;  1VEE A;  5LAO A;  3TP9 A;  1RHS A;  4F67 A;  1BOH A;  1CWS A;  5LAM A;  3AAX A;  1UAR A;  3HZU A;  3ICS A;  1YMD A;  3OP3 A;  1WV9 A;  2DCQ A;  3NTA A;  1QXN A;  2IFD A;  2J6P A;  2JTQ A;  2OUC A;  3OLH A;  1URH A;  3P3A A;  2UZQ A;  1GN0 A;  3R2U A;  2EG4 A;  3I3U A;  4JGT A;  2VSW A;  3IWH A;  2MOL A;  2KL3 A;  5HBQ A;  2JTS A;  1HZM A;  3D1P A;  3HWI A;  4WH7 A;  1DP2 A;  3TG1 B;  5HPA A;  1YS0 A;  3NHV A;  1RHD A;  1YM9 A;  1BOI A;  2MOI A;  1YT8 A;  3AAY A;  2IFV A;  1TQ1 A;  1CWT A;  3ILM A;  4WH9 A;  3IPO A;  3FOJ A;  2EG4 B;  3FS5 A;  3GK5 A;  3TG3 A;  2A2K A;  1GMX A;  3I2V A;  3G5J A;  3NTD A;  3MZZ A;  5HBL A;  3K9R A;  1OKG A;  1H4M X;  3F4A A;  2K0Z A;  3FNJ A;  1ORB A;  3HIX A;  3UTN X;  1E0C A;  2JTR A;  2WLX A;  3O3W A;  3IPP A;  1WHB A;  1YML A;  1YMK A;  2EG3 A;  3NT6 A;  2WLR A;  5HBP A;  1H4K X;  3ICT A;  1C25 A;  5HBO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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