2YPS | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	127
structure length	107
Chain Sequence	SMPPSNFLEIDVSNPGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 107 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Crystal Structure of the Px Domain of Human Sorting Nexin 3 rcsb
molecule keywords	SORTING NEXIN-3
total genus	28
structure length	107
sequence length	127
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2012-10-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	2ypsA00

2WWEA 4PQPA 2V14A 4IKBA 1GD5A 2REDA 2RAJA 3HPBA 4OXWA 4IKBB 1XTEA 3IQ2A 3HPCX 2YPSA 1XTNA 3LUIA 1KMDA 1O7KA 2ETTA 3P0CA 2REAA 4BGJA 2IWLX 4PZGA 2I4KA 4ON3A 2DYBA 2RAIA 1KQ6A 2CZOA 4P2JA 4PQOA 1H6HA 1OCUA 3DYTA 2RAKA 1OCSA 4AKVA 4P2IA 4AZ9A 2AR5A 3FOGA 2V6VA 2CSKA 4IKDA 4HASA 2L73A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2WWE A;  4PQP A;  2V14 A;  4IKB A;  1GD5 A;  2RED A;  2RAJ A;  3HPB A;  4OXW A;  4IKB B;  1XTE A;  3IQ2 A;  3HPC X;  2YPS A;  1XTN A;  3LUI A;  1KMD A;  1O7K A;  2ETT A;  3P0C A;  2REA A;  4BGJ A;  2IWL X;  4PZG A;  2I4K A;  4ON3 A;  2DYB A;  2RAI A;  1KQ6 A;  2CZO A;  4P2J A;  4PQO A;  1H6H A;  1OCU A;  3DYT A;  2RAK A;  1OCS A;  4AKV A;  4P2I A;  4AZ9 A;  2AR5 A;  3FOG A;  2V6V A;  2CSK A;  4IKD A;  4HAS A;  2L73 A; 
#chains in the Genus database with same CATH topology
 2WWE A;  4PQP A;  2V14 A;  4IKB A;  1GD5 A;  2RED A;  2RAJ A;  3HPB A;  4OXW A;  4IKB B;  1XTE A;  3IQ2 A;  3HPC X;  2YPS A;  1XTN A;  3LUI A;  1KMD A;  1O7K A;  2ETT A;  3P0C A;  2REA A;  4BGJ A;  2IWL X;  4PZG A;  2I4K A;  4ON3 A;  2DYB A;  2RAI A;  1KQ6 A;  2CZO A;  4P2J A;  4PQO A;  1H6H A;  1OCU A;  3DYT A;  2RAK A;  1OCS A;  4AKV A;  4P2I A;  4AZ9 A;  2AR5 A;  3FOG A;  2V6V A;  2CSK A;  4IKD A;  4HAS A;  2L73 A; 
#chains in the Genus database with same CATH homology
 2WWE A;  4PQP A;  2V14 A;  4IKB A;  1GD5 A;  2RED A;  2RAJ A;  3HPB A;  4OXW A;  4IKB B;  1XTE A;  3IQ2 A;  3HPC X;  2YPS A;  1XTN A;  3LUI A;  1KMD A;  1O7K A;  2ETT A;  3P0C A;  2REA A;  4BGJ A;  2IWL X;  4PZG A;  2I4K A;  4ON3 A;  2DYB A;  2RAI A;  1KQ6 A;  2CZO A;  4P2J A;  4PQO A;  1H6H A;  1OCU A;  3DYT A;  2RAK A;  1OCS A;  4AKV A;  4P2I A;  4AZ9 A;  2AR5 A;  3FOG A;  2V6V A;  2CSK A;  4IKD A;  4HAS A;  2L73 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2YPSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations