3BIM | Genus

Total Genus 40

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	125
structure length	125
Chain Sequence	ADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription repressor
source organism	Homo sapiens
publication title	Structure of a BCOR corepressor peptide in complex with the BCL6 BTB domain dimer. pubmed doi rcsb
molecule keywords	B-cell lymphoma 6 protein
total genus	40
structure length	125
sequence length	125
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature
pdb deposition date	2007-11-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3bimA00

1S1GA 2VPKA 4AWJB 2OVPA 2ASSA 4W9GB 4EOZA 4UIJA 5BXHA 4APFA 5BXBA 1R29A 3M8VA 2E32B 3LNMB 1FQVB 2Q81A 3DRZA 5BXDA 3ZKJB 3M5BA 2P1NA 1T1DA 3OGKA 4CXIA 3ZUNB 4W9KB 4N9F5 1R28A 3B84A 5DADA 4CXTA 3L2OA 4JTDB 1P22B 3C6PA 1LM8C 1DSXA 3ZRCB 1EODA 5HZGC 4W9HH 5EUPA 4CXJA 1EOFA 4UYIA 1LQBB 1HV2A 2P1QA 3MKSA 4BKTB 4W9LB 4W9FB 4ZOUA 4U2NA 2FNJC 5LLIB 2E31B 2C9WC 5H7HA 1EXBE 2OVRA 2YY9A 2P1PA 3GA1A 5A15A 3HVEB 3ZNGB 1QDWA 4W9IB 5A6RA 1R2BA 1VCBB 4JTAB 5IBKA 2IZVC 3DCGB 1FS1B 3OGLA 2A79B 4AJYC 3LUTB 3HVEA 5FTAA 4W9HB 4BKSB 3M4TA 4BGCA 1NEXA 3HU6A 2Z8HA 4WQOC 3ZTCB 4JGHC 4U2MA 4B9KB 2NZ0B 5BO4C 3M52A 3HQIA 4W9EB 3HTMA 3OHVA 2IF5A 4CRHA 4HXIA 2NN2A 2PPIA 3KVTA 3E4UA 3LBZA 1EOEA 2JZ3C 4W9DB 4W9JB 1CS3A 1NN7A 4AP2A 3I3NA 1FS2B 1LDKD 1QDVA 4J8ZA 2P1OA 2P1MA 4U77A 5H7GA 2MA9C 4B9KE 3V7DA 5JH5B 3FKCA 3ZRFB 1BUOA 3BIMA 3WSOB 2I2RA 4B95B 1A68A 3ZTDB 4I6JC 5HYWB 2ASTA 2VKPA 4W9CB 3OHUA 3OGMA 2R9RB 4CP3A 2OVQA 3C6OA 3C6NA 5DAFA 2IHCA 4JTCB
chains in the Genus database with same CATH superfamily

1S1GA 2VPKA 4AWJB 2OVPA 2ASSA 4W9GB 4EOZA 4UIJA 5BXHA 4APFA 5BXBA 4ZGCA 1R29A 3M8VA 2E32B 3LNMB 1FQVB 2Q81A 3DRZA 5BXDA 3ZKJB 3M5BA 2P1NA 1T1DA 3OGKA 4CXIA 3ZUNB 4W9KB 4N9F5 1R28A 3B84A 5DADA 4CXTA 3L2OA 4JTDB 1P22B 3C6PA 1LM8C 1DSXA 3ZRCB 1EODA 5HZGC 4W9HH 5EUPA 4CXJA 1EOFA 4UYIA 1LQBB 1HV2A 2P1QA 3MKSA 4BKTB 4W9LB 4W9FB 4ZOUA 4U2NA 2FNJC 5LLIB 2E31B 2C9WC 5H7HA 1EXBE 2OVRA 2YY9A 2P1PA 3GA1A 5A15A 3HVEB 3ZNGB 1QDWA 4W9IB 5A6RA 1R2BA 1VCBB 4JTAB 5IBKA 2IZVC 3DCGB 1FS1B 3OGLA 2A79B 4YY8A 4AJYC 3LUTB 3HVEA 5FTAA 4W9HB 4BKSB 3M4TA 4BGCA 3HU6A 1NEXA 2Z8HA 4WQOC 3ZTCB 4JGHC 4U2MA 4B9KB 2NZ0B 5BO4C 3M52A 3HQIA 4W9EB 3HTMA 3OHVA 2IF5A 4CRHA 4HXIA 2NN2A 2PPIA 3KVTA 3E4UA 3LBZA 1EOEA 2JZ3C 4W9DB 4W9JB 1CS3A 1NN7A 4AP2A 3I3NA 1FS2B 1LDKD 1QDVA 4J8ZA 2P1OA 2P1MA 4U77A 5H7GA 2MA9C 4B9KE 3V7DA 5JH5B 3FKCA 3DRYA 1BUOA 3BIMA 3ZRFB 3WSOB 2I2RA 3DRXA 4B95B 1A68A 3ZTDB 4I6JC 5HYWB 2ASTA 2VKPA 4W9CB 3OHUA 3OGMA 2R9RB 4CP3A 2OVQA 3C6OA 3C6NA 5DAFA 2IHCA 4JTCB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1S1G A;  2VPK A;  4AWJ B;  2OVP A;  2ASS A;  4W9G B;  4EOZ A;  4UIJ A;  5BXH A;  4APF A;  5BXB A;  1R29 A;  3M8V A;  2E32 B;  3LNM B;  1FQV B;  2Q81 A;  3DRZ A;  5BXD A;  3ZKJ B;  3M5B A;  2P1N A;  1T1D A;  3OGK A;  4CXI A;  3ZUN B;  4W9K B;  4N9F 5;  1R28 A;  3B84 A;  5DAD A;  4CXT A;  3L2O A;  4JTD B;  1P22 B;  3C6P A;  1LM8 C;  1DSX A;  3ZRC B;  1EOD A;  5HZG C;  4W9H H;  5EUP A;  4CXJ A;  1EOF A;  4UYI A;  1LQB B;  1HV2 A;  2P1Q A;  3MKS A;  4BKT B;  4W9L B;  4W9F B;  4ZOU A;  4U2N A;  2FNJ C;  5LLI B;  2E31 B;  2C9W C;  5H7H A;  1EXB E;  2OVR A;  2YY9 A;  2P1P A;  3GA1 A;  5A15 A;  3HVE B;  3ZNG B;  1QDW A;  4W9I B;  5A6R A;  1R2B A;  1VCB B;  4JTA B;  5IBK A;  2IZV C;  3DCG B;  1FS1 B;  3OGL A;  2A79 B;  4AJY C;  3LUT B;  3HVE A;  5FTA A;  4W9H B;  4BKS B;  3M4T A;  4BGC A;  1NEX A;  3HU6 A;  2Z8H A;  4WQO C;  3ZTC B;  4JGH C;  4U2M A;  4B9K B;  2NZ0 B;  5BO4 C;  3M52 A;  3HQI A;  4W9E B;  3HTM A;  3OHV A;  2IF5 A;  4CRH A;  4HXI A;  2NN2 A;  2PPI A;  3KVT A;  3E4U A;  3LBZ A;  1EOE A;  2JZ3 C;  4W9D B;  4W9J B;  1CS3 A;  1NN7 A;  4AP2 A;  3I3N A;  1FS2 B;  1LDK D;  1QDV A;  4J8Z A;  2P1O A;  2P1M A;  4U77 A;  5H7G A;  2MA9 C;  4B9K E;  3V7D A;  5JH5 B;  3FKC A;  3ZRF B;  1BUO A;  3BIM A;  3WSO B;  2I2R A;  4B95 B;  1A68 A;  3ZTD B;  4I6J C;  5HYW B;  2AST A;  2VKP A;  4W9C B;  3OHU A;  3OGM A;  2R9R B;  4CP3 A;  2OVQ A;  3C6O A;  3C6N A;  5DAF A;  2IHC A;  4JTC B; 
#chains in the Genus database with same CATH topology
 1S1G A;  2VPK A;  4AWJ B;  2OVP A;  2ASS A;  4W9G B;  4EOZ A;  4UIJ A;  5BXH A;  4APF A;  5BXB A;  4ZGC A;  1R29 A;  3M8V A;  2E32 B;  3LNM B;  1FQV B;  2Q81 A;  3DRZ A;  5BXD A;  3ZKJ B;  3M5B A;  2P1N A;  1T1D A;  3OGK A;  4CXI A;  3ZUN B;  4W9K B;  4N9F 5;  1R28 A;  3B84 A;  5DAD A;  4CXT A;  3L2O A;  4JTD B;  1P22 B;  3C6P A;  1LM8 C;  1DSX A;  3ZRC B;  1EOD A;  5HZG C;  4W9H H;  5EUP A;  4CXJ A;  1EOF A;  4UYI A;  1LQB B;  1HV2 A;  2P1Q A;  3MKS A;  4BKT B;  4W9L B;  4W9F B;  4ZOU A;  4U2N A;  2FNJ C;  5LLI B;  2E31 B;  2C9W C;  5H7H A;  1EXB E;  2OVR A;  2YY9 A;  2P1P A;  3GA1 A;  5A15 A;  3HVE B;  3ZNG B;  1QDW A;  4W9I B;  5A6R A;  1R2B A;  1VCB B;  4JTA B;  5IBK A;  2IZV C;  3DCG B;  1FS1 B;  3OGL A;  2A79 B;  4YY8 A;  4AJY C;  3LUT B;  3HVE A;  5FTA A;  4W9H B;  4BKS B;  3M4T A;  4BGC A;  3HU6 A;  1NEX A;  2Z8H A;  4WQO C;  3ZTC B;  4JGH C;  4U2M A;  4B9K B;  2NZ0 B;  5BO4 C;  3M52 A;  3HQI A;  4W9E B;  3HTM A;  3OHV A;  2IF5 A;  4CRH A;  4HXI A;  2NN2 A;  2PPI A;  3KVT A;  3E4U A;  3LBZ A;  1EOE A;  2JZ3 C;  4W9D B;  4W9J B;  1CS3 A;  1NN7 A;  4AP2 A;  3I3N A;  1FS2 B;  1LDK D;  1QDV A;  4J8Z A;  2P1O A;  2P1M A;  4U77 A;  5H7G A;  2MA9 C;  4B9K E;  3V7D A;  5JH5 B;  3FKC A;  3DRY A;  1BUO A;  3BIM A;  3ZRF B;  3WSO B;  2I2R A;  3DRX A;  4B95 B;  1A68 A;  3ZTD B;  4I6J C;  5HYW B;  2AST A;  2VKP A;  4W9C B;  3OHU A;  3OGM A;  2R9R B;  4CP3 A;  2OVQ A;  3C6O A;  3C6N A;  5DAF A;  2IHC A;  4JTC B; 
#chains in the Genus database with same CATH homology
 1S1G A;  2VPK A;  4AWJ B;  2OVP A;  2ASS A;  4W9G B;  4EOZ A;  4UIJ A;  5BXH A;  4APF A;  5BXB A;  4ZGC A;  1R29 A;  3M8V A;  2E32 B;  3LNM B;  1FQV B;  2Q81 A;  3DRZ A;  5BXD A;  3ZKJ B;  3M5B A;  2P1N A;  1T1D A;  3OGK A;  4CXI A;  3ZUN B;  4W9K B;  4N9F 5;  1R28 A;  3B84 A;  5DAD A;  4CXT A;  3L2O A;  4JTD B;  1P22 B;  3C6P A;  1LM8 C;  1DSX A;  3ZRC B;  1EOD A;  5HZG C;  4W9H H;  5EUP A;  4CXJ A;  1EOF A;  4UYI A;  1LQB B;  1HV2 A;  2P1Q A;  3MKS A;  4BKT B;  4W9L B;  4W9F B;  4ZOU A;  4U2N A;  2FNJ C;  5LLI B;  2E31 B;  2C9W C;  5H7H A;  1EXB E;  2OVR A;  2YY9 A;  2P1P A;  3GA1 A;  5A15 A;  3HVE B;  3ZNG B;  1QDW A;  4W9I B;  5A6R A;  1R2B A;  1VCB B;  4JTA B;  5IBK A;  2IZV C;  3DCG B;  1FS1 B;  3OGL A;  2A79 B;  4YY8 A;  4AJY C;  3LUT B;  3HVE A;  5FTA A;  4W9H B;  4BKS B;  3M4T A;  4BGC A;  3HU6 A;  1NEX A;  2Z8H A;  4WQO C;  3ZTC B;  4JGH C;  4U2M A;  4B9K B;  2NZ0 B;  5BO4 C;  3M52 A;  3HQI A;  4W9E B;  3HTM A;  3OHV A;  2IF5 A;  4CRH A;  4HXI A;  2NN2 A;  2PPI A;  3KVT A;  3E4U A;  3LBZ A;  1EOE A;  2JZ3 C;  4W9D B;  4W9J B;  1CS3 A;  1NN7 A;  4AP2 A;  3I3N A;  1FS2 B;  1LDK D;  1QDV A;  4J8Z A;  2P1O A;  2P1M A;  4U77 A;  5H7G A;  2MA9 C;  4B9K E;  3V7D A;  5JH5 B;  3FKC A;  3DRY A;  1BUO A;  3BIM A;  3ZRF B;  3WSO B;  2I2R A;  3DRX A;  4B95 B;  1A68 A;  3ZTD B;  4I6J C;  5HYW B;  2AST A;  2VKP A;  4W9C B;  3OHU A;  3OGM A;  2R9R B;  4CP3 A;  2OVQ A;  3C6O A;  3C6N A;  5DAF A;  2IHC A;  4JTC B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BIMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations