3C6OA

Small molecule agonists and antagonists of f-box protein-substrate interactions in auxin perception and signaling
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
138
structure length
76
Chain Sequence
ALESQTIAILAKVIEYLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
TI1 (54-57)TIV3 (53-56)TIV1 (26-29)EMPTYTIV2 (27-30)TII1 (52-55)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Arabidopsis thaliana
publication title Small-molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling.
pubmed doi rcsb
molecule keywords SKP1-like protein 1A
total genus 18
structure length 76
sequence length 138
ec nomenclature
pdb deposition date 2008-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 3c6oA00
1FS2B 1EODA 3OGKA 2R9RB 2OVRA 1S1GA 4W9DB 3WSOB 1HV2A 2OVPA 3OGMA 4J8ZA 4B9KB 3DCGB 5HYWB 1R28A 1EXBE 3MKSA 1A68A 4AP2A 3L2OA 3LUTB 2IF5A 4JTCB 3BIMA 2C9WC 2P1OA 4U2MA 4CXJA 2JZ3C 4B95B 3HU6A 3KVTA 3HTMA 1NEXA 3M52A 4EOZA 4W9HH 1LM8C 3C6PA 5JH5B 2VPKA 3FKCA 4W9EB 2P1PA 5BXHA 3M8VA 4W9HB 4ZOUA 2E31B 4CP3A 2Q81A 4B9KE 5FTAA 3I3NA 3ZUNB 4U2NA 1R2BA 4BKTB 3HVEA 4UYIA 1VCBB 2NN2A 1DSXA 5A15A 1T1DA 4U77A 2IZVC 3M5BA 3ZRFB 3DRZA 1CS3A 3OGLA 2MA9C 5IBKA 2YY9A 4W9JB 4W9IB 3M4TA 4N9F5 4W9GB 1QDWA 1P22B 2E32B 2I2RA 3E4UA 2FNJC 5H7HA 4JGHC 1QDVA 5BXBA 5BXDA 3LBZA 1LQBB 4AWJB 2OVQA 5EUPA 2Z8HA 3V7DA 5HZGC 2PPIA 3C6OA 4CXTA 4W9CB 5DADA 1LDKD 5H7GA 2IHCA 1FS1B 1R29A 2ASTA 4WQOC 3HVEB 4JTAB 3ZTDB 1EOEA 1EOFA 1BUOA 3ZRCB 4BGCA 4CRHA 4JTDB 5LLIB 3GA1A 4BKSB 5A6RA 5BO4C 5DAFA 3LNMB 4W9LB 4UIJA 3C6NA 4W9KB 3ZNGB 3ZTCB 2NZ0B 4HXIA 4W9FB 3OHUA 2VKPA 1NN7A 1FQVB 2P1QA 4I6JC 2A79B 2ASSA 4CXIA 3OHVA 2P1NA 3HQIA 3B84A 2P1MA 3ZKJB 4APFA 4AJYC
chains in the Genus database with same CATH superfamily
1FS2B 1EODA 3OGKA 2R9RB 4YY8A 2OVRA 1S1GA 4W9DB 3WSOB 1HV2A 2OVPA 3OGMA 4J8ZA 4B9KB 3DCGB 5HYWB 1R28A 1EXBE 3MKSA 3DRXA 1A68A 4AP2A 3L2OA 3LUTB 2IF5A 4JTCB 3BIMA 2C9WC 2P1OA 4U2MA 4CXJA 2JZ3C 4B95B 3HU6A 3KVTA 3HTMA 1NEXA 3M52A 4EOZA 4W9HH 1LM8C 4ZGCA 3C6PA 5JH5B 2VPKA 3FKCA 4W9EB 2P1PA 5BXHA 3M8VA 4W9HB 4ZOUA 2E31B 4CP3A 2Q81A 4B9KE 5FTAA 3I3NA 3ZUNB 4U2NA 1R2BA 4BKTB 3HVEA 4UYIA 1VCBB 2NN2A 1DSXA 5A15A 1T1DA 4U77A 2IZVC 3M5BA 3ZRFB 3DRZA 1CS3A 3OGLA 2MA9C 5IBKA 2YY9A 4W9JB 4W9IB 3M4TA 4N9F5 4W9GB 1QDWA 1P22B 2E32B 2I2RA 3E4UA 2FNJC 5H7HA 4JGHC 1QDVA 5BXBA 5BXDA 3LBZA 1LQBB 4AWJB 2OVQA 5EUPA 2Z8HA 3V7DA 5HZGC 2PPIA 3C6OA 4CXTA 4W9CB 3DRYA 5DADA 1LDKD 5H7GA 2IHCA 1FS1B 1R29A 2ASTA 4WQOC 3HVEB 4JTAB 3ZTDB 1EOEA 1EOFA 1BUOA 3ZRCB 4BGCA 4CRHA 4JTDB 5LLIB 3GA1A 4BKSB 5A6RA 5BO4C 5DAFA 3LNMB 4W9LB 4UIJA 3C6NA 4W9KB 3ZNGB 3ZTCB 2NZ0B 4HXIA 4W9FB 3OHUA 2VKPA 1NN7A 1FQVB 2P1QA 4I6JC 2A79B 2ASSA 4CXIA 3OHVA 2P1NA 3HQIA 3B84A 2P1MA 3ZKJB 4APFA 4AJYC
chains in the Genus database with same CATH topology
1FS2B 1EODA 3OGKA 2R9RB 4YY8A 2OVRA 1S1GA 4W9DB 3WSOB 1HV2A 2OVPA 3OGMA 4J8ZA 4B9KB 3DCGB 5HYWB 1R28A 1EXBE 3MKSA 3DRXA 1A68A 4AP2A 3L2OA 3LUTB 2IF5A 4JTCB 3BIMA 2C9WC 2P1OA 4U2MA 4CXJA 2JZ3C 4B95B 3HU6A 3KVTA 3HTMA 1NEXA 3M52A 4EOZA 4W9HH 1LM8C 4ZGCA 3C6PA 5JH5B 2VPKA 3FKCA 4W9EB 2P1PA 5BXHA 3M8VA 4W9HB 4ZOUA 2E31B 4CP3A 2Q81A 4B9KE 5FTAA 3I3NA 3ZUNB 4U2NA 1R2BA 4BKTB 3HVEA 4UYIA 1VCBB 2NN2A 1DSXA 5A15A 1T1DA 4U77A 2IZVC 3M5BA 3ZRFB 3DRZA 1CS3A 3OGLA 2MA9C 5IBKA 2YY9A 4W9JB 4W9IB 3M4TA 4N9F5 4W9GB 1QDWA 1P22B 2E32B 2I2RA 3E4UA 2FNJC 5H7HA 4JGHC 1QDVA 5BXBA 5BXDA 3LBZA 1LQBB 4AWJB 2OVQA 5EUPA 2Z8HA 3V7DA 5HZGC 2PPIA 3C6OA 4CXTA 4W9CB 3DRYA 5DADA 1LDKD 5H7GA 2IHCA 1FS1B 1R29A 2ASTA 4WQOC 3HVEB 4JTAB 3ZTDB 1EOEA 1EOFA 1BUOA 3ZRCB 4BGCA 4CRHA 4JTDB 5LLIB 3GA1A 4BKSB 5A6RA 5BO4C 5DAFA 3LNMB 4W9LB 4UIJA 3C6NA 4W9KB 3ZNGB 3ZTCB 2NZ0B 4HXIA 4W9FB 3OHUA 2VKPA 1NN7A 1FQVB 2P1QA 4I6JC 2A79B 2ASSA 4CXIA 3OHVA 2P1NA 3HQIA 3B84A 2P1MA 3ZKJB 4APFA 4AJYC
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1FS2 B;  1EOD A;  3OGK A;  2R9R B;  2OVR A;  1S1G A;  4W9D B;  3WSO B;  1HV2 A;  2OVP A;  3OGM A;  4J8Z A;  4B9K B;  3DCG B;  5HYW B;  1R28 A;  1EXB E;  3MKS A;  1A68 A;  4AP2 A;  3L2O A;  3LUT B;  2IF5 A;  4JTC B;  3BIM A;  2C9W C;  2P1O A;  4U2M A;  4CXJ A;  2JZ3 C;  4B95 B;  3HU6 A;  3KVT A;  3HTM A;  1NEX A;  3M52 A;  4EOZ A;  4W9H H;  1LM8 C;  3C6P A;  5JH5 B;  2VPK A;  3FKC A;  4W9E B;  2P1P A;  5BXH A;  3M8V A;  4W9H B;  4ZOU A;  2E31 B;  4CP3 A;  2Q81 A;  4B9K E;  5FTA A;  3I3N A;  3ZUN B;  4U2N A;  1R2B A;  4BKT B;  3HVE A;  4UYI A;  1VCB B;  2NN2 A;  1DSX A;  5A15 A;  1T1D A;  4U77 A;  2IZV C;  3M5B A;  3ZRF B;  3DRZ A;  1CS3 A;  3OGL A;  2MA9 C;  5IBK A;  2YY9 A;  4W9J B;  4W9I B;  3M4T A;  4N9F 5;  4W9G B;  1QDW A;  1P22 B;  2E32 B;  2I2R A;  3E4U A;  2FNJ C;  5H7H A;  4JGH C;  1QDV A;  5BXB A;  5BXD A;  3LBZ A;  1LQB B;  4AWJ B;  2OVQ A;  5EUP A;  2Z8H A;  3V7D A;  5HZG C;  2PPI A;  3C6O A;  4CXT A;  4W9C B;  5DAD A;  1LDK D;  5H7G A;  2IHC A;  1FS1 B;  1R29 A;  2AST A;  4WQO C;  3HVE B;  4JTA B;  3ZTD B;  1EOE A;  1EOF A;  1BUO A;  3ZRC B;  4BGC A;  4CRH A;  4JTD B;  5LLI B;  3GA1 A;  4BKS B;  5A6R A;  5BO4 C;  5DAF A;  3LNM B;  4W9L B;  4UIJ A;  3C6N A;  4W9K B;  3ZNG B;  3ZTC B;  2NZ0 B;  4HXI A;  4W9F B;  3OHU A;  2VKP A;  1NN7 A;  1FQV B;  2P1Q A;  4I6J C;  2A79 B;  2ASS A;  4CXI A;  3OHV A;  2P1N A;  3HQI A;  3B84 A;  2P1M A;  3ZKJ B;  4APF A;  4AJY C; 
#chains in the Genus database with same CATH topology
 1FS2 B;  1EOD A;  3OGK A;  2R9R B;  4YY8 A;  2OVR A;  1S1G A;  4W9D B;  3WSO B;  1HV2 A;  2OVP A;  3OGM A;  4J8Z A;  4B9K B;  3DCG B;  5HYW B;  1R28 A;  1EXB E;  3MKS A;  3DRX A;  1A68 A;  4AP2 A;  3L2O A;  3LUT B;  2IF5 A;  4JTC B;  3BIM A;  2C9W C;  2P1O A;  4U2M A;  4CXJ A;  2JZ3 C;  4B95 B;  3HU6 A;  3KVT A;  3HTM A;  1NEX A;  3M52 A;  4EOZ A;  4W9H H;  1LM8 C;  4ZGC A;  3C6P A;  5JH5 B;  2VPK A;  3FKC A;  4W9E B;  2P1P A;  5BXH A;  3M8V A;  4W9H B;  4ZOU A;  2E31 B;  4CP3 A;  2Q81 A;  4B9K E;  5FTA A;  3I3N A;  3ZUN B;  4U2N A;  1R2B A;  4BKT B;  3HVE A;  4UYI A;  1VCB B;  2NN2 A;  1DSX A;  5A15 A;  1T1D A;  4U77 A;  2IZV C;  3M5B A;  3ZRF B;  3DRZ A;  1CS3 A;  3OGL A;  2MA9 C;  5IBK A;  2YY9 A;  4W9J B;  4W9I B;  3M4T A;  4N9F 5;  4W9G B;  1QDW A;  1P22 B;  2E32 B;  2I2R A;  3E4U A;  2FNJ C;  5H7H A;  4JGH C;  1QDV A;  5BXB A;  5BXD A;  3LBZ A;  1LQB B;  4AWJ B;  2OVQ A;  5EUP A;  2Z8H A;  3V7D A;  5HZG C;  2PPI A;  3C6O A;  4CXT A;  4W9C B;  3DRY A;  5DAD A;  1LDK D;  5H7G A;  2IHC A;  1FS1 B;  1R29 A;  2AST A;  4WQO C;  3HVE B;  4JTA B;  3ZTD B;  1EOE A;  1EOF A;  1BUO A;  3ZRC B;  4BGC A;  4CRH A;  4JTD B;  5LLI B;  3GA1 A;  4BKS B;  5A6R A;  5BO4 C;  5DAF A;  3LNM B;  4W9L B;  4UIJ A;  3C6N A;  4W9K B;  3ZNG B;  3ZTC B;  2NZ0 B;  4HXI A;  4W9F B;  3OHU A;  2VKP A;  1NN7 A;  1FQV B;  2P1Q A;  4I6J C;  2A79 B;  2ASS A;  4CXI A;  3OHV A;  2P1N A;  3HQI A;  3B84 A;  2P1M A;  3ZKJ B;  4APF A;  4AJY C; 
#chains in the Genus database with same CATH homology
 1FS2 B;  1EOD A;  3OGK A;  2R9R B;  4YY8 A;  2OVR A;  1S1G A;  4W9D B;  3WSO B;  1HV2 A;  2OVP A;  3OGM A;  4J8Z A;  4B9K B;  3DCG B;  5HYW B;  1R28 A;  1EXB E;  3MKS A;  3DRX A;  1A68 A;  4AP2 A;  3L2O A;  3LUT B;  2IF5 A;  4JTC B;  3BIM A;  2C9W C;  2P1O A;  4U2M A;  4CXJ A;  2JZ3 C;  4B95 B;  3HU6 A;  3KVT A;  3HTM A;  1NEX A;  3M52 A;  4EOZ A;  4W9H H;  1LM8 C;  4ZGC A;  3C6P A;  5JH5 B;  2VPK A;  3FKC A;  4W9E B;  2P1P A;  5BXH A;  3M8V A;  4W9H B;  4ZOU A;  2E31 B;  4CP3 A;  2Q81 A;  4B9K E;  5FTA A;  3I3N A;  3ZUN B;  4U2N A;  1R2B A;  4BKT B;  3HVE A;  4UYI A;  1VCB B;  2NN2 A;  1DSX A;  5A15 A;  1T1D A;  4U77 A;  2IZV C;  3M5B A;  3ZRF B;  3DRZ A;  1CS3 A;  3OGL A;  2MA9 C;  5IBK A;  2YY9 A;  4W9J B;  4W9I B;  3M4T A;  4N9F 5;  4W9G B;  1QDW A;  1P22 B;  2E32 B;  2I2R A;  3E4U A;  2FNJ C;  5H7H A;  4JGH C;  1QDV A;  5BXB A;  5BXD A;  3LBZ A;  1LQB B;  4AWJ B;  2OVQ A;  5EUP A;  2Z8H A;  3V7D A;  5HZG C;  2PPI A;  3C6O A;  4CXT A;  4W9C B;  3DRY A;  5DAD A;  1LDK D;  5H7G A;  2IHC A;  1FS1 B;  1R29 A;  2AST A;  4WQO C;  3HVE B;  4JTA B;  3ZTD B;  1EOE A;  1EOF A;  1BUO A;  3ZRC B;  4BGC A;  4CRH A;  4JTD B;  5LLI B;  3GA1 A;  4BKS B;  5A6R A;  5BO4 C;  5DAF A;  3LNM B;  4W9L B;  4UIJ A;  3C6N A;  4W9K B;  3ZNG B;  3ZTC B;  2NZ0 B;  4HXI A;  4W9F B;  3OHU A;  2VKP A;  1NN7 A;  1FQV B;  2P1Q A;  4I6J C;  2A79 B;  2ASS A;  4CXI A;  3OHV A;  2P1N A;  3HQI A;  3B84 A;  2P1M A;  3ZKJ B;  4APF A;  4AJY C;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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