3E4U | Genus

Total Genus 32

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	122
structure length	119
Chain Sequence	SCIQFTRHASDVLLNLNRLRSRDILTDVVIVVEQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 119 atoms

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119 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Structure of the wild-type human BCL6 POZ domain. pubmed doi rcsb
molecule keywords	B-cell lymphoma 6 protein
total genus	32
structure length	119
sequence length	122
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2008-08-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3e4uA00

3HVEB 2OVPA 4J8ZA 4W9EB 3L2OA 4W9CB 1QDVA 3C6PA 4B9KB 1CS3A 3E4UA 2Z8HA 1EODA 2IF5A 4CRHA 2IZVC 4JTAB 5HYWB 5BXHA 2C9WC 3OHUA 1A68A 2JZ3C 3KVTA 2R9RB 1EOFA 3ZTDB 3HVEA 1BUOA 4B9KE 3LUTB 3MKSA 4BGCA 3ZRFB 1NN7A 2OVQA 1P22B 4JTCB 5JH5B 2P1MA 1R28A 2PPIA 4JGHC 2OVRA 3HTMA 2FNJC 3GA1A 4I6JC 2P1QA 1LM8C 3BIMA 2IHCA 2P1OA 3FKCA 1LQBB 4W9IB 3ZKJB 3OHVA 3ZNGB 3B84A 4W9GB 4W9HB 4U2MA 1EXBE 3I3NA 4CP3A 5A6RA 1FS1B 3OGMA 4AWJB 2P1PA 2Q81A 1QDWA 3DCGB 4AJYC 2I2RA 3M4TA 3C6OA 1NEXA 3ZTCB 5LLIB 3M8VA 3ZRCB 3M5BA 5DADA 5BXBA 4W9JB 4W9LB 4W9HH 1R2BA 4UIJA 2ASSA 4ZOUA 4B95B 1HV2A 4CXTA 5A15A 4W9KB 5IBKA 5H7HA 1R29A 3ZUNB 4EOZA 1DSXA 1LDKD 1S1GA 5DAFA 4CXJA 3V7DA 5H7GA 5BXDA 2VKPA 5HZGC 2VPKA 4N9F5 4CXIA 2YY9A 2E31B 2NZ0B 4HXIA 4APFA 2ASTA 1VCBB 2E32B 2P1NA 3WSOB 4U77A 3HU6A 4BKTB 5FTAA 4UYIA 5BO4C 4U2NA 2MA9C 2A79B 4W9DB 1EOEA 3LBZA 4WQOC 3DRZA 5EUPA 3OGLA 2NN2A 3M52A 3C6NA 1FQVB 4JTDB 4W9FB 3HQIA 4BKSB 1FS2B 3LNMB 3OGKA 4AP2A 1T1DA
chains in the Genus database with same CATH superfamily

3HVEB 2OVPA 4J8ZA 4W9EB 3L2OA 4W9CB 1QDVA 3C6PA 4B9KB 1CS3A 3E4UA 2Z8HA 1EODA 2IF5A 4CRHA 2IZVC 4JTAB 5HYWB 5BXHA 2C9WC 3OHUA 1A68A 2JZ3C 3KVTA 2R9RB 1EOFA 3ZTDB 3HVEA 1BUOA 4B9KE 3LUTB 3MKSA 4BGCA 3ZRFB 1NN7A 4YY8A 2OVQA 1P22B 4JTCB 5JH5B 2P1MA 1R28A 2PPIA 3DRYA 4JGHC 4ZGCA 2OVRA 3HTMA 2FNJC 3GA1A 4I6JC 2P1QA 1LM8C 3BIMA 2IHCA 2P1OA 3FKCA 1LQBB 4W9IB 3ZKJB 3OHVA 3ZNGB 3B84A 4W9GB 4W9HB 4U2MA 1EXBE 3I3NA 4CP3A 5A6RA 1FS1B 3OGMA 4AWJB 2P1PA 2Q81A 1QDWA 3DCGB 4AJYC 2I2RA 3M4TA 3C6OA 1NEXA 3ZTCB 5LLIB 3M8VA 3ZRCB 3M5BA 5DADA 5BXBA 4W9JB 4W9LB 4W9HH 1R2BA 4UIJA 2ASSA 4ZOUA 4B95B 1HV2A 4CXTA 5A15A 4W9KB 5IBKA 5H7HA 1R29A 3ZUNB 4EOZA 1DSXA 1LDKD 1S1GA 5DAFA 4CXJA 3V7DA 5H7GA 5BXDA 2VKPA 5HZGC 2VPKA 4N9F5 4CXIA 2YY9A 2E31B 2NZ0B 4HXIA 4APFA 2ASTA 1VCBB 2E32B 2P1NA 3WSOB 4U77A 3HU6A 3DRXA 4BKTB 5FTAA 4UYIA 5BO4C 4U2NA 2MA9C 2A79B 4W9DB 1EOEA 3LBZA 4WQOC 3DRZA 5EUPA 3OGLA 2NN2A 3M52A 3C6NA 1FQVB 4JTDB 4W9FB 3HQIA 4BKSB 1FS2B 3LNMB 3OGKA 4AP2A 1T1DA
chains in the Genus database with same CATH topology

3HVEB 2OVPA 4J8ZA 4W9EB 3L2OA 4W9CB 1QDVA 3C6PA 4B9KB 1CS3A 3E4UA 2Z8HA 1EODA 2IF5A 4CRHA 2IZVC 4JTAB 5HYWB 5BXHA 2C9WC 3OHUA 1A68A 2JZ3C 3KVTA 2R9RB 1EOFA 3ZTDB 3HVEA 1BUOA 4B9KE 3LUTB 3MKSA 4BGCA 3ZRFB 1NN7A 4YY8A 2OVQA 1P22B 4JTCB 5JH5B 2P1MA 1R28A 2PPIA 3DRYA 4JGHC 4ZGCA 2OVRA 3HTMA 2FNJC 3GA1A 4I6JC 2P1QA 1LM8C 3BIMA 2IHCA 2P1OA 3FKCA 1LQBB 4W9IB 3ZKJB 3OHVA 3ZNGB 3B84A 4W9GB 4W9HB 4U2MA 1EXBE 3I3NA 4CP3A 5A6RA 1FS1B 3OGMA 4AWJB 2P1PA 2Q81A 1QDWA 3DCGB 4AJYC 2I2RA 3M4TA 3C6OA 1NEXA 3ZTCB 5LLIB 3M8VA 3ZRCB 3M5BA 5DADA 5BXBA 4W9JB 4W9LB 4W9HH 1R2BA 4UIJA 2ASSA 4ZOUA 4B95B 1HV2A 4CXTA 5A15A 4W9KB 5IBKA 5H7HA 1R29A 3ZUNB 4EOZA 1DSXA 1LDKD 1S1GA 5DAFA 4CXJA 3V7DA 5H7GA 5BXDA 2VKPA 5HZGC 2VPKA 4N9F5 4CXIA 2YY9A 2E31B 2NZ0B 4HXIA 4APFA 2ASTA 1VCBB 2E32B 2P1NA 3WSOB 4U77A 3HU6A 3DRXA 4BKTB 5FTAA 4UYIA 5BO4C 4U2NA 2MA9C 2A79B 4W9DB 1EOEA 3LBZA 4WQOC 3DRZA 5EUPA 3OGLA 2NN2A 3M52A 3C6NA 1FQVB 4JTDB 4W9FB 3HQIA 4BKSB 1FS2B 3LNMB 3OGKA 4AP2A 1T1DA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3HVE B;  2OVP A;  4J8Z A;  4W9E B;  3L2O A;  4W9C B;  1QDV A;  3C6P A;  4B9K B;  1CS3 A;  3E4U A;  2Z8H A;  1EOD A;  2IF5 A;  4CRH A;  2IZV C;  4JTA B;  5HYW B;  5BXH A;  2C9W C;  3OHU A;  1A68 A;  2JZ3 C;  3KVT A;  2R9R B;  1EOF A;  3ZTD B;  3HVE A;  1BUO A;  4B9K E;  3LUT B;  3MKS A;  4BGC A;  3ZRF B;  1NN7 A;  2OVQ A;  1P22 B;  4JTC B;  5JH5 B;  2P1M A;  1R28 A;  2PPI A;  4JGH C;  2OVR A;  3HTM A;  2FNJ C;  3GA1 A;  4I6J C;  2P1Q A;  1LM8 C;  3BIM A;  2IHC A;  2P1O A;  3FKC A;  1LQB B;  4W9I B;  3ZKJ B;  3OHV A;  3ZNG B;  3B84 A;  4W9G B;  4W9H B;  4U2M A;  1EXB E;  3I3N A;  4CP3 A;  5A6R A;  1FS1 B;  3OGM A;  4AWJ B;  2P1P A;  2Q81 A;  1QDW A;  3DCG B;  4AJY C;  2I2R A;  3M4T A;  3C6O A;  1NEX A;  3ZTC B;  5LLI B;  3M8V A;  3ZRC B;  3M5B A;  5DAD A;  5BXB A;  4W9J B;  4W9L B;  4W9H H;  1R2B A;  4UIJ A;  2ASS A;  4ZOU A;  4B95 B;  1HV2 A;  4CXT A;  5A15 A;  4W9K B;  5IBK A;  5H7H A;  1R29 A;  3ZUN B;  4EOZ A;  1DSX A;  1LDK D;  1S1G A;  5DAF A;  4CXJ A;  3V7D A;  5H7G A;  5BXD A;  2VKP A;  5HZG C;  2VPK A;  4N9F 5;  4CXI A;  2YY9 A;  2E31 B;  2NZ0 B;  4HXI A;  4APF A;  2AST A;  1VCB B;  2E32 B;  2P1N A;  3WSO B;  4U77 A;  3HU6 A;  4BKT B;  5FTA A;  4UYI A;  5BO4 C;  4U2N A;  2MA9 C;  2A79 B;  4W9D B;  1EOE A;  3LBZ A;  4WQO C;  3DRZ A;  5EUP A;  3OGL A;  2NN2 A;  3M52 A;  3C6N A;  1FQV B;  4JTD B;  4W9F B;  3HQI A;  4BKS B;  1FS2 B;  3LNM B;  3OGK A;  4AP2 A;  1T1D A; 
#chains in the Genus database with same CATH topology
 3HVE B;  2OVP A;  4J8Z A;  4W9E B;  3L2O A;  4W9C B;  1QDV A;  3C6P A;  4B9K B;  1CS3 A;  3E4U A;  2Z8H A;  1EOD A;  2IF5 A;  4CRH A;  2IZV C;  4JTA B;  5HYW B;  5BXH A;  2C9W C;  3OHU A;  1A68 A;  2JZ3 C;  3KVT A;  2R9R B;  1EOF A;  3ZTD B;  3HVE A;  1BUO A;  4B9K E;  3LUT B;  3MKS A;  4BGC A;  3ZRF B;  1NN7 A;  4YY8 A;  2OVQ A;  1P22 B;  4JTC B;  5JH5 B;  2P1M A;  1R28 A;  2PPI A;  3DRY A;  4JGH C;  4ZGC A;  2OVR A;  3HTM A;  2FNJ C;  3GA1 A;  4I6J C;  2P1Q A;  1LM8 C;  3BIM A;  2IHC A;  2P1O A;  3FKC A;  1LQB B;  4W9I B;  3ZKJ B;  3OHV A;  3ZNG B;  3B84 A;  4W9G B;  4W9H B;  4U2M A;  1EXB E;  3I3N A;  4CP3 A;  5A6R A;  1FS1 B;  3OGM A;  4AWJ B;  2P1P A;  2Q81 A;  1QDW A;  3DCG B;  4AJY C;  2I2R A;  3M4T A;  3C6O A;  1NEX A;  3ZTC B;  5LLI B;  3M8V A;  3ZRC B;  3M5B A;  5DAD A;  5BXB A;  4W9J B;  4W9L B;  4W9H H;  1R2B A;  4UIJ A;  2ASS A;  4ZOU A;  4B95 B;  1HV2 A;  4CXT A;  5A15 A;  4W9K B;  5IBK A;  5H7H A;  1R29 A;  3ZUN B;  4EOZ A;  1DSX A;  1LDK D;  1S1G A;  5DAF A;  4CXJ A;  3V7D A;  5H7G A;  5BXD A;  2VKP A;  5HZG C;  2VPK A;  4N9F 5;  4CXI A;  2YY9 A;  2E31 B;  2NZ0 B;  4HXI A;  4APF A;  2AST A;  1VCB B;  2E32 B;  2P1N A;  3WSO B;  4U77 A;  3HU6 A;  3DRX A;  4BKT B;  5FTA A;  4UYI A;  5BO4 C;  4U2N A;  2MA9 C;  2A79 B;  4W9D B;  1EOE A;  3LBZ A;  4WQO C;  3DRZ A;  5EUP A;  3OGL A;  2NN2 A;  3M52 A;  3C6N A;  1FQV B;  4JTD B;  4W9F B;  3HQI A;  4BKS B;  1FS2 B;  3LNM B;  3OGK A;  4AP2 A;  1T1D A; 
#chains in the Genus database with same CATH homology
 3HVE B;  2OVP A;  4J8Z A;  4W9E B;  3L2O A;  4W9C B;  1QDV A;  3C6P A;  4B9K B;  1CS3 A;  3E4U A;  2Z8H A;  1EOD A;  2IF5 A;  4CRH A;  2IZV C;  4JTA B;  5HYW B;  5BXH A;  2C9W C;  3OHU A;  1A68 A;  2JZ3 C;  3KVT A;  2R9R B;  1EOF A;  3ZTD B;  3HVE A;  1BUO A;  4B9K E;  3LUT B;  3MKS A;  4BGC A;  3ZRF B;  1NN7 A;  4YY8 A;  2OVQ A;  1P22 B;  4JTC B;  5JH5 B;  2P1M A;  1R28 A;  2PPI A;  3DRY A;  4JGH C;  4ZGC A;  2OVR A;  3HTM A;  2FNJ C;  3GA1 A;  4I6J C;  2P1Q A;  1LM8 C;  3BIM A;  2IHC A;  2P1O A;  3FKC A;  1LQB B;  4W9I B;  3ZKJ B;  3OHV A;  3ZNG B;  3B84 A;  4W9G B;  4W9H B;  4U2M A;  1EXB E;  3I3N A;  4CP3 A;  5A6R A;  1FS1 B;  3OGM A;  4AWJ B;  2P1P A;  2Q81 A;  1QDW A;  3DCG B;  4AJY C;  2I2R A;  3M4T A;  3C6O A;  1NEX A;  3ZTC B;  5LLI B;  3M8V A;  3ZRC B;  3M5B A;  5DAD A;  5BXB A;  4W9J B;  4W9L B;  4W9H H;  1R2B A;  4UIJ A;  2ASS A;  4ZOU A;  4B95 B;  1HV2 A;  4CXT A;  5A15 A;  4W9K B;  5IBK A;  5H7H A;  1R29 A;  3ZUN B;  4EOZ A;  1DSX A;  1LDK D;  1S1G A;  5DAF A;  4CXJ A;  3V7D A;  5H7G A;  5BXD A;  2VKP A;  5HZG C;  2VPK A;  4N9F 5;  4CXI A;  2YY9 A;  2E31 B;  2NZ0 B;  4HXI A;  4APF A;  2AST A;  1VCB B;  2E32 B;  2P1N A;  3WSO B;  4U77 A;  3HU6 A;  3DRX A;  4BKT B;  5FTA A;  4UYI A;  5BO4 C;  4U2N A;  2MA9 C;  2A79 B;  4W9D B;  1EOE A;  3LBZ A;  4WQO C;  3DRZ A;  5EUP A;  3OGL A;  2NN2 A;  3M52 A;  3C6N A;  1FQV B;  4JTD B;  4W9F B;  3HQI A;  4BKS B;  1FS2 B;  3LNM B;  3OGK A;  4AP2 A;  1T1D A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3E4UA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations