3FKC | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	113
structure length	113
Chain Sequence	RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 113 atoms

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113 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Crystal Structure of Human Zinc finger and BTB domain containing 33 rcsb
molecule keywords	Transcriptional regulator Kaiso
total genus	37
structure length	113
sequence length	113
ec nomenclature
pdb deposition date	2008-12-16

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3fkcA00

4W9LB 5H7HA 1R2BA 4CXTA 2P1PA 3HTMA 4ZOUA 4B95B 3MKSA 2MA9C 5FTAA 3ZRFB 1CS3A 1P22B 3LNMB 1T1DA 4N9F5 2IF5A 2IZVC 3OGLA 3LBZA 1NN7A 4EOZA 4J8ZA 4HXIA 2YY9A 2R9RB 4JTCB 5A6RA 2A79B 1FS1B 2NZ0B 2JZ3C 2IHCA 5BXBA 5JH5B 4B9KB 5HYWB 3ZTDB 4BGCA 4W9HH 4W9JB 4CXJA 1NEXA 4AJYC 4W9GB 1LM8C 3C6OA 5A15A 4W9KB 5EUPA 2P1NA 1FS2B 1QDVA 3GA1A 1EODA 4BKTB 3M5BA 4W9DB 3ZTCB 4U2MA 3KVTA 4I6JC 3HQIA 2OVQA 3LUTB 3L2OA 3V7DA 3ZUNB 4JTDB 2OVPA 5IBKA 3BIMA 5DADA 4UIJA 4W9FB 3M4TA 3WSOB 4W9IB 2PPIA 2P1QA 1A68A 2I2RA 2ASSA 3OHUA 3E4UA 2P1OA 4WQOC 1BUOA 4AP2A 1LDKD 3DRZA 3I3NA 4CRHA 5BXHA 4APFA 4CP3A 3ZKJB 4CXIA 3HVEB 4AWJB 1R28A 1EXBE 2OVRA 4UYIA 5BO4C 1EOEA 3DCGB 4B9KE 4W9CB 4W9EB 1EOFA 2VPKA 3OHVA 3HVEA 3C6NA 2FNJC 4JGHC 4W9HB 2NN2A 4U77A 3ZNGB 3M52A 1HV2A 2P1MA 3OGMA 3ZRCB 2Q81A 3HU6A 3M8VA 1FQVB 3OGKA 4U2NA 3FKCA 2C9WC 5HZGC 4JTAB 3B84A 5LLIB 1S1GA 2E31B 1LQBB 3C6PA 2VKPA 2Z8HA 5BXDA 1R29A 4BKSB 1DSXA 5H7GA 2E32B 5DAFA 1QDWA 1VCBB 2ASTA
chains in the Genus database with same CATH superfamily

4W9LB 5H7HA 1R2BA 4CXTA 2P1PA 3HTMA 4ZOUA 4B95B 3MKSA 2MA9C 5FTAA 3ZRFB 1CS3A 1P22B 3LNMB 1T1DA 4N9F5 2IF5A 2IZVC 3OGLA 3LBZA 1NN7A 4EOZA 4J8ZA 4HXIA 2YY9A 2R9RB 4JTCB 5A6RA 2A79B 1FS1B 2NZ0B 2JZ3C 2IHCA 5BXBA 5JH5B 4B9KB 5HYWB 3ZTDB 4BGCA 4W9HH 4W9JB 4CXJA 1NEXA 4AJYC 4W9GB 1LM8C 3C6OA 5A15A 4W9KB 5EUPA 2P1NA 1FS2B 1QDVA 3GA1A 1EODA 4BKTB 3M5BA 4W9DB 3ZTCB 4U2MA 3KVTA 4I6JC 3HQIA 2OVQA 3LUTB 3L2OA 3V7DA 3ZUNB 4JTDB 2OVPA 5IBKA 3BIMA 4ZGCA 5DADA 4UIJA 4W9FB 3M4TA 3WSOB 4W9IB 2PPIA 2P1QA 1A68A 2I2RA 2ASSA 3OHUA 3E4UA 2P1OA 4WQOC 1BUOA 4AP2A 1LDKD 3DRZA 3I3NA 4CRHA 5BXHA 4APFA 4CP3A 3ZKJB 4CXIA 3HVEB 4AWJB 1R28A 1EXBE 2OVRA 4UYIA 5BO4C 1EOEA 3DCGB 4B9KE 4W9CB 4W9EB 1EOFA 2VPKA 3OHVA 3HVEA 3C6NA 2FNJC 3DRXA 4JGHC 2NN2A 4U77A 4W9HB 3ZNGB 3M52A 1HV2A 2P1MA 3OGMA 3ZRCB 2Q81A 3HU6A 3M8VA 1FQVB 3OGKA 4U2NA 3FKCA 2C9WC 5HZGC 4JTAB 3B84A 5LLIB 1S1GA 2E31B 4YY8A 1LQBB 3C6PA 2VKPA 2Z8HA 5BXDA 1R29A 4BKSB 1DSXA 5H7GA 2E32B 5DAFA 3DRYA 1QDWA 1VCBB 2ASTA
chains in the Genus database with same CATH topology

4W9LB 5H7HA 1R2BA 4CXTA 2P1PA 3HTMA 4ZOUA 4B95B 3MKSA 2MA9C 5FTAA 3ZRFB 1CS3A 1P22B 3LNMB 1T1DA 4N9F5 2IF5A 2IZVC 3OGLA 3LBZA 1NN7A 4EOZA 4J8ZA 4HXIA 2YY9A 2R9RB 4JTCB 5A6RA 2A79B 1FS1B 2NZ0B 2JZ3C 2IHCA 5BXBA 5JH5B 4B9KB 5HYWB 3ZTDB 4BGCA 4W9HH 4W9JB 4CXJA 1NEXA 4AJYC 4W9GB 1LM8C 3C6OA 5A15A 4W9KB 5EUPA 2P1NA 1FS2B 1QDVA 3GA1A 1EODA 4BKTB 3M5BA 4W9DB 3ZTCB 4U2MA 3KVTA 4I6JC 3HQIA 2OVQA 3LUTB 3L2OA 3V7DA 3ZUNB 4JTDB 2OVPA 5IBKA 3BIMA 4ZGCA 5DADA 4UIJA 4W9FB 3M4TA 3WSOB 4W9IB 2PPIA 2P1QA 1A68A 2I2RA 2ASSA 3OHUA 3E4UA 2P1OA 4WQOC 1BUOA 4AP2A 1LDKD 3DRZA 3I3NA 4CRHA 5BXHA 4APFA 4CP3A 3ZKJB 4CXIA 3HVEB 4AWJB 1R28A 1EXBE 2OVRA 4UYIA 5BO4C 1EOEA 3DCGB 4B9KE 4W9CB 4W9EB 1EOFA 2VPKA 3OHVA 3HVEA 3C6NA 2FNJC 3DRXA 4JGHC 2NN2A 4U77A 4W9HB 3ZNGB 3M52A 1HV2A 2P1MA 3OGMA 3ZRCB 2Q81A 3HU6A 3M8VA 1FQVB 3OGKA 4U2NA 3FKCA 2C9WC 5HZGC 4JTAB 3B84A 5LLIB 1S1GA 2E31B 4YY8A 1LQBB 3C6PA 2VKPA 2Z8HA 5BXDA 1R29A 4BKSB 1DSXA 5H7GA 2E32B 5DAFA 3DRYA 1QDWA 1VCBB 2ASTA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4W9L B;  5H7H A;  1R2B A;  4CXT A;  2P1P A;  3HTM A;  4ZOU A;  4B95 B;  3MKS A;  2MA9 C;  5FTA A;  3ZRF B;  1CS3 A;  1P22 B;  3LNM B;  1T1D A;  4N9F 5;  2IF5 A;  2IZV C;  3OGL A;  3LBZ A;  1NN7 A;  4EOZ A;  4J8Z A;  4HXI A;  2YY9 A;  2R9R B;  4JTC B;  5A6R A;  2A79 B;  1FS1 B;  2NZ0 B;  2JZ3 C;  2IHC A;  5BXB A;  5JH5 B;  4B9K B;  5HYW B;  3ZTD B;  4BGC A;  4W9H H;  4W9J B;  4CXJ A;  1NEX A;  4AJY C;  4W9G B;  1LM8 C;  3C6O A;  5A15 A;  4W9K B;  5EUP A;  2P1N A;  1FS2 B;  1QDV A;  3GA1 A;  1EOD A;  4BKT B;  3M5B A;  4W9D B;  3ZTC B;  4U2M A;  3KVT A;  4I6J C;  3HQI A;  2OVQ A;  3LUT B;  3L2O A;  3V7D A;  3ZUN B;  4JTD B;  2OVP A;  5IBK A;  3BIM A;  5DAD A;  4UIJ A;  4W9F B;  3M4T A;  3WSO B;  4W9I B;  2PPI A;  2P1Q A;  1A68 A;  2I2R A;  2ASS A;  3OHU A;  3E4U A;  2P1O A;  4WQO C;  1BUO A;  4AP2 A;  1LDK D;  3DRZ A;  3I3N A;  4CRH A;  5BXH A;  4APF A;  4CP3 A;  3ZKJ B;  4CXI A;  3HVE B;  4AWJ B;  1R28 A;  1EXB E;  2OVR A;  4UYI A;  5BO4 C;  1EOE A;  3DCG B;  4B9K E;  4W9C B;  4W9E B;  1EOF A;  2VPK A;  3OHV A;  3HVE A;  3C6N A;  2FNJ C;  4JGH C;  4W9H B;  2NN2 A;  4U77 A;  3ZNG B;  3M52 A;  1HV2 A;  2P1M A;  3OGM A;  3ZRC B;  2Q81 A;  3HU6 A;  3M8V A;  1FQV B;  3OGK A;  4U2N A;  3FKC A;  2C9W C;  5HZG C;  4JTA B;  3B84 A;  5LLI B;  1S1G A;  2E31 B;  1LQB B;  3C6P A;  2VKP A;  2Z8H A;  5BXD A;  1R29 A;  4BKS B;  1DSX A;  5H7G A;  2E32 B;  5DAF A;  1QDW A;  1VCB B;  2AST A; 
#chains in the Genus database with same CATH topology
 4W9L B;  5H7H A;  1R2B A;  4CXT A;  2P1P A;  3HTM A;  4ZOU A;  4B95 B;  3MKS A;  2MA9 C;  5FTA A;  3ZRF B;  1CS3 A;  1P22 B;  3LNM B;  1T1D A;  4N9F 5;  2IF5 A;  2IZV C;  3OGL A;  3LBZ A;  1NN7 A;  4EOZ A;  4J8Z A;  4HXI A;  2YY9 A;  2R9R B;  4JTC B;  5A6R A;  2A79 B;  1FS1 B;  2NZ0 B;  2JZ3 C;  2IHC A;  5BXB A;  5JH5 B;  4B9K B;  5HYW B;  3ZTD B;  4BGC A;  4W9H H;  4W9J B;  4CXJ A;  1NEX A;  4AJY C;  4W9G B;  1LM8 C;  3C6O A;  5A15 A;  4W9K B;  5EUP A;  2P1N A;  1FS2 B;  1QDV A;  3GA1 A;  1EOD A;  4BKT B;  3M5B A;  4W9D B;  3ZTC B;  4U2M A;  3KVT A;  4I6J C;  3HQI A;  2OVQ A;  3LUT B;  3L2O A;  3V7D A;  3ZUN B;  4JTD B;  2OVP A;  5IBK A;  3BIM A;  4ZGC A;  5DAD A;  4UIJ A;  4W9F B;  3M4T A;  3WSO B;  4W9I B;  2PPI A;  2P1Q A;  1A68 A;  2I2R A;  2ASS A;  3OHU A;  3E4U A;  2P1O A;  4WQO C;  1BUO A;  4AP2 A;  1LDK D;  3DRZ A;  3I3N A;  4CRH A;  5BXH A;  4APF A;  4CP3 A;  3ZKJ B;  4CXI A;  3HVE B;  4AWJ B;  1R28 A;  1EXB E;  2OVR A;  4UYI A;  5BO4 C;  1EOE A;  3DCG B;  4B9K E;  4W9C B;  4W9E B;  1EOF A;  2VPK A;  3OHV A;  3HVE A;  3C6N A;  2FNJ C;  3DRX A;  4JGH C;  2NN2 A;  4U77 A;  4W9H B;  3ZNG B;  3M52 A;  1HV2 A;  2P1M A;  3OGM A;  3ZRC B;  2Q81 A;  3HU6 A;  3M8V A;  1FQV B;  3OGK A;  4U2N A;  3FKC A;  2C9W C;  5HZG C;  4JTA B;  3B84 A;  5LLI B;  1S1G A;  2E31 B;  4YY8 A;  1LQB B;  3C6P A;  2VKP A;  2Z8H A;  5BXD A;  1R29 A;  4BKS B;  1DSX A;  5H7G A;  2E32 B;  5DAF A;  3DRY A;  1QDW A;  1VCB B;  2AST A; 
#chains in the Genus database with same CATH homology
 4W9L B;  5H7H A;  1R2B A;  4CXT A;  2P1P A;  3HTM A;  4ZOU A;  4B95 B;  3MKS A;  2MA9 C;  5FTA A;  3ZRF B;  1CS3 A;  1P22 B;  3LNM B;  1T1D A;  4N9F 5;  2IF5 A;  2IZV C;  3OGL A;  3LBZ A;  1NN7 A;  4EOZ A;  4J8Z A;  4HXI A;  2YY9 A;  2R9R B;  4JTC B;  5A6R A;  2A79 B;  1FS1 B;  2NZ0 B;  2JZ3 C;  2IHC A;  5BXB A;  5JH5 B;  4B9K B;  5HYW B;  3ZTD B;  4BGC A;  4W9H H;  4W9J B;  4CXJ A;  1NEX A;  4AJY C;  4W9G B;  1LM8 C;  3C6O A;  5A15 A;  4W9K B;  5EUP A;  2P1N A;  1FS2 B;  1QDV A;  3GA1 A;  1EOD A;  4BKT B;  3M5B A;  4W9D B;  3ZTC B;  4U2M A;  3KVT A;  4I6J C;  3HQI A;  2OVQ A;  3LUT B;  3L2O A;  3V7D A;  3ZUN B;  4JTD B;  2OVP A;  5IBK A;  3BIM A;  4ZGC A;  5DAD A;  4UIJ A;  4W9F B;  3M4T A;  3WSO B;  4W9I B;  2PPI A;  2P1Q A;  1A68 A;  2I2R A;  2ASS A;  3OHU A;  3E4U A;  2P1O A;  4WQO C;  1BUO A;  4AP2 A;  1LDK D;  3DRZ A;  3I3N A;  4CRH A;  5BXH A;  4APF A;  4CP3 A;  3ZKJ B;  4CXI A;  3HVE B;  4AWJ B;  1R28 A;  1EXB E;  2OVR A;  4UYI A;  5BO4 C;  1EOE A;  3DCG B;  4B9K E;  4W9C B;  4W9E B;  1EOF A;  2VPK A;  3OHV A;  3HVE A;  3C6N A;  2FNJ C;  3DRX A;  4JGH C;  2NN2 A;  4U77 A;  4W9H B;  3ZNG B;  3M52 A;  1HV2 A;  2P1M A;  3OGM A;  3ZRC B;  2Q81 A;  3HU6 A;  3M8V A;  1FQV B;  3OGK A;  4U2N A;  3FKC A;  2C9W C;  5HZG C;  4JTA B;  3B84 A;  5LLI B;  1S1G A;  2E31 B;  4YY8 A;  1LQB B;  3C6P A;  2VKP A;  2Z8H A;  5BXD A;  1R29 A;  4BKS B;  1DSX A;  5H7G A;  2E32 B;  5DAF A;  3DRY A;  1QDW A;  1VCB B;  2AST A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3FKCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN