3FOG | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	109
structure length	102
Chain Sequence	HFSIPETESRAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQEAH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 102 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Crystal structure of the PX domain of sorting nexin-17 (SNX17) rcsb
molecule keywords	Sorting nexin-17
total genus	27
structure length	102
sequence length	109
ec nomenclature
pdb deposition date	2008-12-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	3fogA00

4BGJA 2REAA 4AKVA 2RAJA 1KQ6A 2IWLX 4PQOA 3HPCX 4P2JA 4HASA 1OCUA 2ETTA 3IQ2A 1GD5A 1KMDA 2YPSA 1OCSA 2AR5A 4P2IA 2DYBA 2REDA 1H6HA 3LUIA 4ON3A 4IKBA 4AZ9A 4OXWA 2V14A 3FOGA 2V6VA 2WWEA 3P0CA 4IKBB 1XTEA 3HPBA 2RAIA 2CSKA 4PZGA 4PQPA 2RAKA 2CZOA 2I4KA 3DYTA 1O7KA 4IKDA 2L73A 1XTNA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4BGJ A;  2REA A;  4AKV A;  2RAJ A;  1KQ6 A;  2IWL X;  4PQO A;  3HPC X;  4P2J A;  4HAS A;  1OCU A;  2ETT A;  3IQ2 A;  1GD5 A;  1KMD A;  2YPS A;  1OCS A;  2AR5 A;  4P2I A;  2DYB A;  2RED A;  1H6H A;  3LUI A;  4ON3 A;  4IKB A;  4AZ9 A;  4OXW A;  2V14 A;  3FOG A;  2V6V A;  2WWE A;  3P0C A;  4IKB B;  1XTE A;  3HPB A;  2RAI A;  2CSK A;  4PZG A;  4PQP A;  2RAK A;  2CZO A;  2I4K A;  3DYT A;  1O7K A;  4IKD A;  2L73 A;  1XTN A; 
#chains in the Genus database with same CATH topology
 4BGJ A;  2REA A;  4AKV A;  2RAJ A;  1KQ6 A;  2IWL X;  4PQO A;  3HPC X;  4P2J A;  4HAS A;  1OCU A;  2ETT A;  3IQ2 A;  1GD5 A;  1KMD A;  2YPS A;  1OCS A;  2AR5 A;  4P2I A;  2DYB A;  2RED A;  1H6H A;  3LUI A;  4ON3 A;  4IKB A;  4AZ9 A;  4OXW A;  2V14 A;  3FOG A;  2V6V A;  2WWE A;  3P0C A;  4IKB B;  1XTE A;  3HPB A;  2RAI A;  2CSK A;  4PZG A;  4PQP A;  2RAK A;  2CZO A;  2I4K A;  3DYT A;  1O7K A;  4IKD A;  2L73 A;  1XTN A; 
#chains in the Genus database with same CATH homology
 4BGJ A;  2REA A;  4AKV A;  2RAJ A;  1KQ6 A;  2IWL X;  4PQO A;  3HPC X;  4P2J A;  4HAS A;  1OCU A;  2ETT A;  3IQ2 A;  1GD5 A;  1KMD A;  2YPS A;  1OCS A;  2AR5 A;  4P2I A;  2DYB A;  2RED A;  1H6H A;  3LUI A;  4ON3 A;  4IKB A;  4AZ9 A;  4OXW A;  2V14 A;  3FOG A;  2V6V A;  2WWE A;  3P0C A;  4IKB B;  1XTE A;  3HPB A;  2RAI A;  2CSK A;  4PZG A;  4PQP A;  2RAK A;  2CZO A;  2I4K A;  3DYT A;  1O7K A;  4IKD A;  2L73 A;  1XTN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3FOGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations