3GA1 | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	113
structure length	113
Chain Sequence	QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfef421906694d364cc7aed/pdb.gz): 1487 ms

reading 113 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

113 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:112});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Structure of the human Nac1 POZ domain pubmed doi rcsb
molecule keywords	Nucleus accumbens-associated protein 1
total genus	32
structure length	113
sequence length	113
chains with identical sequence	B
ec nomenclature
pdb deposition date	2009-02-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3ga1A00

1EXBE 4W9HH 4U2NA 4W9GB 5IBKA 2IHCA 4W9IB 4EOZA 5BXHA 2JZ3C 4W9DB 4W9FB 2MA9C 3ZKJB 1R29A 3OGKA 5HYWB 2I2RA 4W9JB 3LUTB 2E32B 3FKCA 5A15A 1NN7A 2Q81A 5BO4C 3ZUNB 3HQIA 1QDWA 2NN2A 4B9KE 3WSOB 1FS1B 3ZNGB 2P1MA 3ZTCB 4B9KB 4AP2A 1R2BA 2OVPA 3LBZA 1T1DA 2PPIA 1FQVB 2P1PA 1LQBB 3MKSA 2VPKA 5H7HA 1EOFA 2Z8HA 3ZRCB 4AWJB 4J8ZA 3L2OA 4W9HB 1S1GA 1NEXA 3OHUA 5FTAA 3KVTA 2FNJC 2NZ0B 3C6NA 3OGLA 4HXIA 3HU6A 4ZOUA 5DADA 2E31B 3LNMB 2ASTA 4U2MA 3C6PA 4WQOC 3C6OA 5A6RA 4N9F5 4U77A 4CXTA 1A68A 3ZTDB 2C9WC 4JTCB 4CXJA 2P1NA 3V7DA 5HZGC 4BKSB 2R9RB 1HV2A 5BXBA 2IZVC 1EOEA 5EUPA 2VKPA 3E4UA 1LDKD 3HVEB 4UYIA 4BGCA 3HVEA 4W9CB 4AJYC 2ASSA 5H7GA 1LM8C 2IF5A 5BXDA 4I6JC 4CP3A 3BIMA 4APFA 1VCBB 1P22B 3DRZA 4JTAB 4W9KB 5DAFA 2P1OA 1FS2B 2OVQA 4W9EB 4B95B 2YY9A 4CXIA 4JTDB 1R28A 3ZRFB 3I3NA 3OHVA 4JGHC 4UIJA 1QDVA 1CS3A 3M8VA 2P1QA 3M52A 5LLIB 3M4TA 3HTMA 4BKTB 5JH5B 3DCGB 2A79B 3GA1A 3M5BA 4W9LB 2OVRA 1EODA 4CRHA 1DSXA 3B84A 1BUOA 3OGMA
chains in the Genus database with same CATH superfamily

1EXBE 4W9HH 4U2NA 4W9GB 5IBKA 2IHCA 4W9IB 4EOZA 5BXHA 2JZ3C 4W9DB 4W9FB 2MA9C 3ZKJB 1R29A 3OGKA 5HYWB 2I2RA 4W9JB 3LUTB 2E32B 3FKCA 5A15A 1NN7A 2Q81A 5BO4C 3ZUNB 3HQIA 1QDWA 2NN2A 4B9KE 3WSOB 1FS1B 3ZNGB 2P1MA 3ZTCB 4B9KB 4AP2A 1R2BA 2OVPA 3LBZA 1T1DA 2PPIA 1FQVB 2P1PA 1LQBB 3MKSA 2VPKA 5H7HA 1EOFA 2Z8HA 3ZRCB 4AWJB 4J8ZA 3L2OA 4W9HB 4YY8A 1S1GA 1NEXA 3OHUA 5FTAA 3KVTA 2FNJC 2NZ0B 3C6NA 3OGLA 4HXIA 3HU6A 4ZOUA 5DADA 2E31B 3LNMB 2ASTA 4U2MA 3C6PA 4WQOC 3C6OA 5A6RA 4N9F5 4U77A 4CXTA 1A68A 3DRYA 3ZTDB 2C9WC 4JTCB 4CXJA 2P1NA 3V7DA 5HZGC 4BKSB 2R9RB 1HV2A 5BXBA 2IZVC 1EOEA 5EUPA 2VKPA 3E4UA 1LDKD 3HVEB 4UYIA 4BGCA 3HVEA 4W9CB 4AJYC 2ASSA 5H7GA 1LM8C 2IF5A 5BXDA 4I6JC 4CP3A 3BIMA 4APFA 1VCBB 1P22B 3DRZA 4JTAB 4W9KB 3DRXA 5DAFA 2P1OA 1FS2B 2OVQA 4W9EB 4B95B 2YY9A 4CXIA 4JTDB 1R28A 3ZRFB 3I3NA 3OHVA 4JGHC 4UIJA 1QDVA 1CS3A 3M8VA 4ZGCA 2P1QA 3M52A 5LLIB 3M4TA 3HTMA 4BKTB 5JH5B 3DCGB 2A79B 3GA1A 3M5BA 4W9LB 2OVRA 1EODA 4CRHA 1DSXA 3B84A 1BUOA 3OGMA
chains in the Genus database with same CATH topology

1EXBE 4W9HH 4U2NA 4W9GB 5IBKA 2IHCA 4W9IB 4EOZA 5BXHA 2JZ3C 4W9DB 4W9FB 2MA9C 3ZKJB 1R29A 3OGKA 5HYWB 2I2RA 4W9JB 3LUTB 2E32B 3FKCA 5A15A 1NN7A 2Q81A 5BO4C 3ZUNB 3HQIA 1QDWA 2NN2A 4B9KE 3WSOB 1FS1B 3ZNGB 2P1MA 3ZTCB 4B9KB 4AP2A 1R2BA 2OVPA 3LBZA 1T1DA 2PPIA 1FQVB 2P1PA 1LQBB 3MKSA 2VPKA 5H7HA 1EOFA 2Z8HA 3ZRCB 4AWJB 4J8ZA 3L2OA 4W9HB 4YY8A 1S1GA 1NEXA 3OHUA 5FTAA 3KVTA 2FNJC 2NZ0B 3C6NA 3OGLA 4HXIA 3HU6A 4ZOUA 5DADA 2E31B 3LNMB 2ASTA 4U2MA 3C6PA 4WQOC 3C6OA 5A6RA 4N9F5 4U77A 4CXTA 1A68A 3DRYA 3ZTDB 2C9WC 4JTCB 4CXJA 2P1NA 3V7DA 5HZGC 4BKSB 2R9RB 1HV2A 5BXBA 2IZVC 1EOEA 5EUPA 2VKPA 3E4UA 1LDKD 3HVEB 4UYIA 4BGCA 3HVEA 4W9CB 4AJYC 2ASSA 5H7GA 1LM8C 2IF5A 5BXDA 4I6JC 4CP3A 3BIMA 4APFA 1VCBB 1P22B 3DRZA 4JTAB 4W9KB 3DRXA 5DAFA 2P1OA 1FS2B 2OVQA 4W9EB 4B95B 2YY9A 4CXIA 4JTDB 1R28A 3ZRFB 3I3NA 3OHVA 4JGHC 4UIJA 1QDVA 1CS3A 3M8VA 4ZGCA 2P1QA 3M52A 5LLIB 3M4TA 3HTMA 4BKTB 5JH5B 3DCGB 2A79B 3GA1A 3M5BA 4W9LB 2OVRA 1EODA 4CRHA 1DSXA 3B84A 1BUOA 3OGMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1EXB E;  4W9H H;  4U2N A;  4W9G B;  5IBK A;  2IHC A;  4W9I B;  4EOZ A;  5BXH A;  2JZ3 C;  4W9D B;  4W9F B;  2MA9 C;  3ZKJ B;  1R29 A;  3OGK A;  5HYW B;  2I2R A;  4W9J B;  3LUT B;  2E32 B;  3FKC A;  5A15 A;  1NN7 A;  2Q81 A;  5BO4 C;  3ZUN B;  3HQI A;  1QDW A;  2NN2 A;  4B9K E;  3WSO B;  1FS1 B;  3ZNG B;  2P1M A;  3ZTC B;  4B9K B;  4AP2 A;  1R2B A;  2OVP A;  3LBZ A;  1T1D A;  2PPI A;  1FQV B;  2P1P A;  1LQB B;  3MKS A;  2VPK A;  5H7H A;  1EOF A;  2Z8H A;  3ZRC B;  4AWJ B;  4J8Z A;  3L2O A;  4W9H B;  1S1G A;  1NEX A;  3OHU A;  5FTA A;  3KVT A;  2FNJ C;  2NZ0 B;  3C6N A;  3OGL A;  4HXI A;  3HU6 A;  4ZOU A;  5DAD A;  2E31 B;  3LNM B;  2AST A;  4U2M A;  3C6P A;  4WQO C;  3C6O A;  5A6R A;  4N9F 5;  4U77 A;  4CXT A;  1A68 A;  3ZTD B;  2C9W C;  4JTC B;  4CXJ A;  2P1N A;  3V7D A;  5HZG C;  4BKS B;  2R9R B;  1HV2 A;  5BXB A;  2IZV C;  1EOE A;  5EUP A;  2VKP A;  3E4U A;  1LDK D;  3HVE B;  4UYI A;  4BGC A;  3HVE A;  4W9C B;  4AJY C;  2ASS A;  5H7G A;  1LM8 C;  2IF5 A;  5BXD A;  4I6J C;  4CP3 A;  3BIM A;  4APF A;  1VCB B;  1P22 B;  3DRZ A;  4JTA B;  4W9K B;  5DAF A;  2P1O A;  1FS2 B;  2OVQ A;  4W9E B;  4B95 B;  2YY9 A;  4CXI A;  4JTD B;  1R28 A;  3ZRF B;  3I3N A;  3OHV A;  4JGH C;  4UIJ A;  1QDV A;  1CS3 A;  3M8V A;  2P1Q A;  3M52 A;  5LLI B;  3M4T A;  3HTM A;  4BKT B;  5JH5 B;  3DCG B;  2A79 B;  3GA1 A;  3M5B A;  4W9L B;  2OVR A;  1EOD A;  4CRH A;  1DSX A;  3B84 A;  1BUO A;  3OGM A; 
#chains in the Genus database with same CATH topology
 1EXB E;  4W9H H;  4U2N A;  4W9G B;  5IBK A;  2IHC A;  4W9I B;  4EOZ A;  5BXH A;  2JZ3 C;  4W9D B;  4W9F B;  2MA9 C;  3ZKJ B;  1R29 A;  3OGK A;  5HYW B;  2I2R A;  4W9J B;  3LUT B;  2E32 B;  3FKC A;  5A15 A;  1NN7 A;  2Q81 A;  5BO4 C;  3ZUN B;  3HQI A;  1QDW A;  2NN2 A;  4B9K E;  3WSO B;  1FS1 B;  3ZNG B;  2P1M A;  3ZTC B;  4B9K B;  4AP2 A;  1R2B A;  2OVP A;  3LBZ A;  1T1D A;  2PPI A;  1FQV B;  2P1P A;  1LQB B;  3MKS A;  2VPK A;  5H7H A;  1EOF A;  2Z8H A;  3ZRC B;  4AWJ B;  4J8Z A;  3L2O A;  4W9H B;  4YY8 A;  1S1G A;  1NEX A;  3OHU A;  5FTA A;  3KVT A;  2FNJ C;  2NZ0 B;  3C6N A;  3OGL A;  4HXI A;  3HU6 A;  4ZOU A;  5DAD A;  2E31 B;  3LNM B;  2AST A;  4U2M A;  3C6P A;  4WQO C;  3C6O A;  5A6R A;  4N9F 5;  4U77 A;  4CXT A;  1A68 A;  3DRY A;  3ZTD B;  2C9W C;  4JTC B;  4CXJ A;  2P1N A;  3V7D A;  5HZG C;  4BKS B;  2R9R B;  1HV2 A;  5BXB A;  2IZV C;  1EOE A;  5EUP A;  2VKP A;  3E4U A;  1LDK D;  3HVE B;  4UYI A;  4BGC A;  3HVE A;  4W9C B;  4AJY C;  2ASS A;  5H7G A;  1LM8 C;  2IF5 A;  5BXD A;  4I6J C;  4CP3 A;  3BIM A;  4APF A;  1VCB B;  1P22 B;  3DRZ A;  4JTA B;  4W9K B;  3DRX A;  5DAF A;  2P1O A;  1FS2 B;  2OVQ A;  4W9E B;  4B95 B;  2YY9 A;  4CXI A;  4JTD B;  1R28 A;  3ZRF B;  3I3N A;  3OHV A;  4JGH C;  4UIJ A;  1QDV A;  1CS3 A;  3M8V A;  4ZGC A;  2P1Q A;  3M52 A;  5LLI B;  3M4T A;  3HTM A;  4BKT B;  5JH5 B;  3DCG B;  2A79 B;  3GA1 A;  3M5B A;  4W9L B;  2OVR A;  1EOD A;  4CRH A;  1DSX A;  3B84 A;  1BUO A;  3OGM A; 
#chains in the Genus database with same CATH homology
 1EXB E;  4W9H H;  4U2N A;  4W9G B;  5IBK A;  2IHC A;  4W9I B;  4EOZ A;  5BXH A;  2JZ3 C;  4W9D B;  4W9F B;  2MA9 C;  3ZKJ B;  1R29 A;  3OGK A;  5HYW B;  2I2R A;  4W9J B;  3LUT B;  2E32 B;  3FKC A;  5A15 A;  1NN7 A;  2Q81 A;  5BO4 C;  3ZUN B;  3HQI A;  1QDW A;  2NN2 A;  4B9K E;  3WSO B;  1FS1 B;  3ZNG B;  2P1M A;  3ZTC B;  4B9K B;  4AP2 A;  1R2B A;  2OVP A;  3LBZ A;  1T1D A;  2PPI A;  1FQV B;  2P1P A;  1LQB B;  3MKS A;  2VPK A;  5H7H A;  1EOF A;  2Z8H A;  3ZRC B;  4AWJ B;  4J8Z A;  3L2O A;  4W9H B;  4YY8 A;  1S1G A;  1NEX A;  3OHU A;  5FTA A;  3KVT A;  2FNJ C;  2NZ0 B;  3C6N A;  3OGL A;  4HXI A;  3HU6 A;  4ZOU A;  5DAD A;  2E31 B;  3LNM B;  2AST A;  4U2M A;  3C6P A;  4WQO C;  3C6O A;  5A6R A;  4N9F 5;  4U77 A;  4CXT A;  1A68 A;  3DRY A;  3ZTD B;  2C9W C;  4JTC B;  4CXJ A;  2P1N A;  3V7D A;  5HZG C;  4BKS B;  2R9R B;  1HV2 A;  5BXB A;  2IZV C;  1EOE A;  5EUP A;  2VKP A;  3E4U A;  1LDK D;  3HVE B;  4UYI A;  4BGC A;  3HVE A;  4W9C B;  4AJY C;  2ASS A;  5H7G A;  1LM8 C;  2IF5 A;  5BXD A;  4I6J C;  4CP3 A;  3BIM A;  4APF A;  1VCB B;  1P22 B;  3DRZ A;  4JTA B;  4W9K B;  3DRX A;  5DAF A;  2P1O A;  1FS2 B;  2OVQ A;  4W9E B;  4B95 B;  2YY9 A;  4CXI A;  4JTD B;  1R28 A;  3ZRF B;  3I3N A;  3OHV A;  4JGH C;  4UIJ A;  1QDV A;  1CS3 A;  3M8V A;  4ZGC A;  2P1Q A;  3M52 A;  5LLI B;  3M4T A;  3HTM A;  4BKT B;  5JH5 B;  3DCG B;  2A79 B;  3GA1 A;  3M5B A;  4W9L B;  2OVR A;  1EOD A;  4CRH A;  1DSX A;  3B84 A;  1BUO A;  3OGM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3GA1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations