3HPB | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	154
structure length	154
Chain Sequence	VSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Rattus norvegicus
publication title	The Phox domain of sorting nexin 5 lacks ptdins(3)p specificity and preferentially binds to ptdins(4,5)P2 rcsb
molecule keywords	Snx5 protein
total genus	46
structure length	154
sequence length	154
ec nomenclature
pdb deposition date	2009-06-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	3hpbA00

4PQOA 2REDA 3LUIA 2WWEA 2RAIA 1XTNA 2ETTA 1OCUA 2V6VA 2DYBA 1H6HA 3HPBA 4OXWA 1GD5A 1KQ6A 3HPCX 4PQPA 4BGJA 2RAJA 4AZ9A 1XTEA 4ON3A 2AR5A 1OCSA 4P2JA 2YPSA 3IQ2A 1O7KA 4P2IA 2CZOA 4IKBA 4IKBB 2CSKA 2IWLX 3FOGA 2V14A 4PZGA 2I4KA 4HASA 4AKVA 1KMDA 2REAA 3P0CA 3DYTA 2RAKA 4IKDA 2L73A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4PQO A;  2RED A;  3LUI A;  2WWE A;  2RAI A;  1XTN A;  2ETT A;  1OCU A;  2V6V A;  2DYB A;  1H6H A;  3HPB A;  4OXW A;  1GD5 A;  1KQ6 A;  3HPC X;  4PQP A;  4BGJ A;  2RAJ A;  4AZ9 A;  1XTE A;  4ON3 A;  2AR5 A;  1OCS A;  4P2J A;  2YPS A;  3IQ2 A;  1O7K A;  4P2I A;  2CZO A;  4IKB A;  4IKB B;  2CSK A;  2IWL X;  3FOG A;  2V14 A;  4PZG A;  2I4K A;  4HAS A;  4AKV A;  1KMD A;  2REA A;  3P0C A;  3DYT A;  2RAK A;  4IKD A;  2L73 A; 
#chains in the Genus database with same CATH topology
 4PQO A;  2RED A;  3LUI A;  2WWE A;  2RAI A;  1XTN A;  2ETT A;  1OCU A;  2V6V A;  2DYB A;  1H6H A;  3HPB A;  4OXW A;  1GD5 A;  1KQ6 A;  3HPC X;  4PQP A;  4BGJ A;  2RAJ A;  4AZ9 A;  1XTE A;  4ON3 A;  2AR5 A;  1OCS A;  4P2J A;  2YPS A;  3IQ2 A;  1O7K A;  4P2I A;  2CZO A;  4IKB A;  4IKB B;  2CSK A;  2IWL X;  3FOG A;  2V14 A;  4PZG A;  2I4K A;  4HAS A;  4AKV A;  1KMD A;  2REA A;  3P0C A;  3DYT A;  2RAK A;  4IKD A;  2L73 A; 
#chains in the Genus database with same CATH homology
 4PQO A;  2RED A;  3LUI A;  2WWE A;  2RAI A;  1XTN A;  2ETT A;  1OCU A;  2V6V A;  2DYB A;  1H6H A;  3HPB A;  4OXW A;  1GD5 A;  1KQ6 A;  3HPC X;  4PQP A;  4BGJ A;  2RAJ A;  4AZ9 A;  1XTE A;  4ON3 A;  2AR5 A;  1OCS A;  4P2J A;  2YPS A;  3IQ2 A;  1O7K A;  4P2I A;  2CZO A;  4IKB A;  4IKB B;  2CSK A;  2IWL X;  3FOG A;  2V14 A;  4PZG A;  2I4K A;  4HAS A;  4AKV A;  1KMD A;  2REA A;  3P0C A;  3DYT A;  2RAK A;  4IKD A;  2L73 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3HPBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations