3HPC | Genus

Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	52
sequence length	155
structure length	155
Chain Sequence	SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Rattus norvegicus
publication title	The Phox domain of sorting nexin 5 lacks ptdins(3)p specificity and preferentially binds to ptdins(4,5)P2 rcsb
molecule keywords	Snx5 protein
total genus	52
structure length	155
sequence length	155
ec nomenclature
pdb deposition date	2009-06-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
X	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	3hpcX00

2DYBA 4P2IA 4IKBA 2CSKA 1KQ6A 2CZOA 2RAIA 4IKDA 3IQ2A 3HPCX 1KMDA 2V14A 4AZ9A 2YPSA 3HPBA 3P0CA 3FOGA 2RAKA 4P2JA 2REDA 1O7KA 2ETTA 3DYTA 4ON3A 4PQOA 1H6HA 1XTEA 2L73A 1XTNA 2REAA 4BGJA 2I4KA 4PQPA 4IKBB 4PZGA 2IWLX 3LUIA 1GD5A 2WWEA 4HASA 2RAJA 2V6VA 4OXWA 1OCSA 1OCUA 2AR5A 4AKVA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2DYB A;  4P2I A;  4IKB A;  2CSK A;  1KQ6 A;  2CZO A;  2RAI A;  4IKD A;  3IQ2 A;  3HPC X;  1KMD A;  2V14 A;  4AZ9 A;  2YPS A;  3HPB A;  3P0C A;  3FOG A;  2RAK A;  4P2J A;  2RED A;  1O7K A;  2ETT A;  3DYT A;  4ON3 A;  4PQO A;  1H6H A;  1XTE A;  2L73 A;  1XTN A;  2REA A;  4BGJ A;  2I4K A;  4PQP A;  4IKB B;  4PZG A;  2IWL X;  3LUI A;  1GD5 A;  2WWE A;  4HAS A;  2RAJ A;  2V6V A;  4OXW A;  1OCS A;  1OCU A;  2AR5 A;  4AKV A; 
#chains in the Genus database with same CATH topology
 2DYB A;  4P2I A;  4IKB A;  2CSK A;  1KQ6 A;  2CZO A;  2RAI A;  4IKD A;  3IQ2 A;  3HPC X;  1KMD A;  2V14 A;  4AZ9 A;  2YPS A;  3HPB A;  3P0C A;  3FOG A;  2RAK A;  4P2J A;  2RED A;  1O7K A;  2ETT A;  3DYT A;  4ON3 A;  4PQO A;  1H6H A;  1XTE A;  2L73 A;  1XTN A;  2REA A;  4BGJ A;  2I4K A;  4PQP A;  4IKB B;  4PZG A;  2IWL X;  3LUI A;  1GD5 A;  2WWE A;  4HAS A;  2RAJ A;  2V6V A;  4OXW A;  1OCS A;  1OCU A;  2AR5 A;  4AKV A; 
#chains in the Genus database with same CATH homology
 2DYB A;  4P2I A;  4IKB A;  2CSK A;  1KQ6 A;  2CZO A;  2RAI A;  4IKD A;  3IQ2 A;  3HPC X;  1KMD A;  2V14 A;  4AZ9 A;  2YPS A;  3HPB A;  3P0C A;  3FOG A;  2RAK A;  4P2J A;  2RED A;  1O7K A;  2ETT A;  3DYT A;  4ON3 A;  4PQO A;  1H6H A;  1XTE A;  2L73 A;  1XTN A;  2REA A;  4BGJ A;  2I4K A;  4PQP A;  4IKB B;  4PZG A;  2IWL X;  3LUI A;  1GD5 A;  2WWE A;  4HAS A;  2RAJ A;  2V6V A;  4OXW A;  1OCS A;  1OCU A;  2AR5 A;  4AKV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3HPCX

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations