3I3UA

Crystal structure of lp_1913 protein from lactobacillus plantarum, northeast structural genomics consortium target lpr140a
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
103
structure length
82
Chain Sequence
NDKKIELLTTYLSLYIDHHTVLADMYVVLDVRNAKGAIAMPAKDLATRIGELDPAKTYVVTTLGKTALLVLLSAGFEAYELA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of lp_1913 protein from lactobacillus plantarum, northeast structural genomics Consortium target lpr140a
rcsb
molecule tags Structural genomics, unknown function
source organism Lactobacillus plantarum
molecule keywords uncharacterized protein lp_1913
total genus 25
structure length 82
sequence length 103
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2009-06-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 3i3uA00
2IFDA 3FOJA 3I3UA 5HPAA 1VEEA 2UZQA 1QB0A 1UARA 1YMDA 3HIXA 1WHBA 2JTQA 2FSXA 2J6PA 1URHA 1ORBA 4WH7A 3FLHA 2MOLA 2HHGA 3TG1B 2JTSA 5LAMA 1BOHA 1GN0A 1YM9A 1YMKA 2EG3A 3AAYA 2EG4B 3HZUA 2DCQA 4F67A 3P3AA 3UTNX 2VSWA 3OLHA 4OCGA 3NTAA 1HZMA 2WLXA 2KL3A 3FS5A 3G5JA 1H4MX 1YMLA 3IPOA 3NTDA 5HBQA 4JGTA 1OKGA 2GWFA 3IPPA 3O3WA 5HBPA 1CWTA 1DP2A 2K0ZA 1GMXA 3D1PA 1H4KX 1C25A 3GK5A 2MRMA 5HBOA 1TQ1A 3I2VA 2ORAA 3TP9A 3AAXA 3NHVA 2IFVA 1RHSA 1YS0A 3OP3A 3F4AA 1BOIA 1CWRA 2OUCA 1T3KA 2EG4A 3R2UA 3ICSA 1QXNA 3FNJA 1YT8A 1WV9A 3TG3A 2JTRA 3IWHA 5HBLA 5LAOA 3NT6A 4WH9A 2MOIA 2A2KA 3ICTA 3ILMA 2WLRA 3ICRA 3HWIA 3MZZA 1CWSA 1RHDA 3K9RA 1E0CA
chains in the Genus database with same CATH superfamily
2IFDA 3FOJA 3I3UA 5HPAA 1VEEA 2UZQA 1QB0A 1UARA 1YMDA 3HIXA 1WHBA 2JTQA 2FSXA 2J6PA 1URHA 1ORBA 4WH7A 3FLHA 2MOLA 2HHGA 3TG1B 2JTSA 5LAMA 1BOHA 1GN0A 1YM9A 1YMKA 2EG3A 3AAYA 2EG4B 3HZUA 2DCQA 4F67A 3P3AA 3UTNX 2VSWA 2Q82A 3OLHA 4OCGA 3NTAA 1HZMA 2WLXA 2KL3A 3FS5A 3G5JA 1H4MX 1YMLA 3IPOA 3NTDA 5HBQA 4JGTA 1OKGA 2GWFA 3IPPA 3O3WA 5HBPA 1CWTA 1DP2A 2K0ZA 1GMXA 3D1PA 1H4KX 1C25A 3GK5A 2MRMA 5HBOA 1TQ1A 3I2VA 2ORAA 3TP9A 3AAXA 3NHVA 2IFVA 1RHSA 1YS0A 3OP3A 3F4AA 1BOIA 1CWRA 2OUCA 1T3KA 2EG4A 3R2UA 3ICSA 1QXNA 3FNJA 1YT8A 1WV9A 3TG3A 2JTRA 3IWHA 5HBLA 5LAOA 3NT6A 4WH9A 2MOIA 2A2KA 3ICTA 3ILMA 2WLRA 3ICRA 3HWIA 3MZZA 1CWSA 1RHDA 3K9RA 1E0CA
chains in the Genus database with same CATH topology
2IFDA 3FOJA 3I3UA 5HPAA 1VEEA 2UZQA 1QB0A 1UARA 1YMDA 3HIXA 1WHBA 2JTQA 2FSXA 2J6PA 1URHA 1ORBA 4WH7A 3FLHA 2MOLA 2HHGA 3TG1B 2JTSA 5LAMA 1BOHA 1GN0A 1YM9A 1YMKA 2EG3A 3AAYA 2EG4B 3HZUA 2DCQA 4F67A 3P3AA 3UTNX 2VSWA 3OLHA 4OCGA 3NTAA 1HZMA 2WLXA 2KL3A 3FS5A 3G5JA 1H4MX 1YMLA 3IPOA 3NTDA 5HBQA 4JGTA 1OKGA 2GWFA 3IPPA 3O3WA 5HBPA 1CWTA 1DP2A 2K0ZA 1GMXA 3D1PA 1H4KX 1C25A 3GK5A 2MRMA 5HBOA 1TQ1A 3I2VA 2ORAA 3TP9A 3AAXA 3NHVA 2IFVA 1RHSA 1YS0A 3OP3A 3F4AA 1BOIA 1CWRA 2OUCA 1T3KA 2EG4A 3R2UA 3ICSA 1QXNA 3FNJA 1YT8A 1WV9A 3TG3A 2JTRA 3IWHA 5HBLA 5LAOA 3NT6A 4WH9A 2MOIA 2A2KA 3ICTA 3ILMA 2WLRA 3ICRA 3HWIA 3MZZA 1CWSA 1RHDA 3K9RA 1E0CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IFD A;  3FOJ A;  3I3U A;  5HPA A;  1VEE A;  2UZQ A;  1QB0 A;  1UAR A;  1YMD A;  3HIX A;  1WHB A;  2JTQ A;  2FSX A;  2J6P A;  1URH A;  1ORB A;  4WH7 A;  3FLH A;  2MOL A;  2HHG A;  3TG1 B;  2JTS A;  5LAM A;  1BOH A;  1GN0 A;  1YM9 A;  1YMK A;  2EG3 A;  3AAY A;  2EG4 B;  3HZU A;  2DCQ A;  4F67 A;  3P3A A;  3UTN X;  2VSW A;  3OLH A;  4OCG A;  3NTA A;  1HZM A;  2WLX A;  2KL3 A;  3FS5 A;  3G5J A;  1H4M X;  1YML A;  3IPO A;  3NTD A;  5HBQ A;  4JGT A;  1OKG A;  2GWF A;  3IPP A;  3O3W A;  5HBP A;  1CWT A;  1DP2 A;  2K0Z A;  1GMX A;  3D1P A;  1H4K X;  1C25 A;  3GK5 A;  2MRM A;  5HBO A;  1TQ1 A;  3I2V A;  2ORA A;  3TP9 A;  3AAX A;  3NHV A;  2IFV A;  1RHS A;  1YS0 A;  3OP3 A;  3F4A A;  1BOI A;  1CWR A;  2OUC A;  1T3K A;  2EG4 A;  3R2U A;  3ICS A;  1QXN A;  3FNJ A;  1YT8 A;  1WV9 A;  3TG3 A;  2JTR A;  3IWH A;  5HBL A;  5LAO A;  3NT6 A;  4WH9 A;  2MOI A;  2A2K A;  3ICT A;  3ILM A;  2WLR A;  3ICR A;  3HWI A;  3MZZ A;  1CWS A;  1RHD A;  3K9R A;  1E0C A; 
#chains in the Genus database with same CATH topology
 2IFD A;  3FOJ A;  3I3U A;  5HPA A;  1VEE A;  2UZQ A;  1QB0 A;  1UAR A;  1YMD A;  3HIX A;  1WHB A;  2JTQ A;  2FSX A;  2J6P A;  1URH A;  1ORB A;  4WH7 A;  3FLH A;  2MOL A;  2HHG A;  3TG1 B;  2JTS A;  5LAM A;  1BOH A;  1GN0 A;  1YM9 A;  1YMK A;  2EG3 A;  3AAY A;  2EG4 B;  3HZU A;  2DCQ A;  4F67 A;  3P3A A;  3UTN X;  2VSW A;  2Q82 A;  3OLH A;  4OCG A;  3NTA A;  1HZM A;  2WLX A;  2KL3 A;  3FS5 A;  3G5J A;  1H4M X;  1YML A;  3IPO A;  3NTD A;  5HBQ A;  4JGT A;  1OKG A;  2GWF A;  3IPP A;  3O3W A;  5HBP A;  1CWT A;  1DP2 A;  2K0Z A;  1GMX A;  3D1P A;  1H4K X;  1C25 A;  3GK5 A;  2MRM A;  5HBO A;  1TQ1 A;  3I2V A;  2ORA A;  3TP9 A;  3AAX A;  3NHV A;  2IFV A;  1RHS A;  1YS0 A;  3OP3 A;  3F4A A;  1BOI A;  1CWR A;  2OUC A;  1T3K A;  2EG4 A;  3R2U A;  3ICS A;  1QXN A;  3FNJ A;  1YT8 A;  1WV9 A;  3TG3 A;  2JTR A;  3IWH A;  5HBL A;  5LAO A;  3NT6 A;  4WH9 A;  2MOI A;  2A2K A;  3ICT A;  3ILM A;  2WLR A;  3ICR A;  3HWI A;  3MZZ A;  1CWS A;  1RHD A;  3K9R A;  1E0C A; 
#chains in the Genus database with same CATH homology
 2IFD A;  3FOJ A;  3I3U A;  5HPA A;  1VEE A;  2UZQ A;  1QB0 A;  1UAR A;  1YMD A;  3HIX A;  1WHB A;  2JTQ A;  2FSX A;  2J6P A;  1URH A;  1ORB A;  4WH7 A;  3FLH A;  2MOL A;  2HHG A;  3TG1 B;  2JTS A;  5LAM A;  1BOH A;  1GN0 A;  1YM9 A;  1YMK A;  2EG3 A;  3AAY A;  2EG4 B;  3HZU A;  2DCQ A;  4F67 A;  3P3A A;  3UTN X;  2VSW A;  3OLH A;  4OCG A;  3NTA A;  1HZM A;  2WLX A;  2KL3 A;  3FS5 A;  3G5J A;  1H4M X;  1YML A;  3IPO A;  3NTD A;  5HBQ A;  4JGT A;  1OKG A;  2GWF A;  3IPP A;  3O3W A;  5HBP A;  1CWT A;  1DP2 A;  2K0Z A;  1GMX A;  3D1P A;  1H4K X;  1C25 A;  3GK5 A;  2MRM A;  5HBO A;  1TQ1 A;  3I2V A;  2ORA A;  3TP9 A;  3AAX A;  3NHV A;  2IFV A;  1RHS A;  1YS0 A;  3OP3 A;  3F4A A;  1BOI A;  1CWR A;  2OUC A;  1T3K A;  2EG4 A;  3R2U A;  3ICS A;  1QXN A;  3FNJ A;  1YT8 A;  1WV9 A;  3TG3 A;  2JTR A;  3IWH A;  5HBL A;  5LAO A;  3NT6 A;  4WH9 A;  2MOI A;  2A2K A;  3ICT A;  3ILM A;  2WLR A;  3ICR A;  3HWI A;  3MZZ A;  1CWS A;  1RHD A;  3K9R A;  1E0C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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