3IQ2 | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	127
structure length	123
Chain Sequence	MDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 123 atoms

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123 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Human Sorting Nexin 7, Phox Homology (Px) Domain rcsb
molecule keywords	Sorting nexin-7
total genus	30
structure length	123
sequence length	127
chains with identical sequence	B
ec nomenclature
pdb deposition date	2009-08-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	3iq2A00

4HASA 3HPBA 1H6HA 2REDA 1XTEA 1OCSA 4PZGA 4AZ9A 4IKBB 2RAKA 2L73A 3HPCX 1OCUA 2CZOA 2V14A 2YPSA 2WWEA 2V6VA 4PQPA 4BGJA 1GD5A 4AKVA 1KMDA 4IKBA 3IQ2A 4IKDA 2I4KA 4PQOA 2AR5A 1O7KA 2ETTA 2REAA 2RAJA 3FOGA 3DYTA 2IWLX 1XTNA 2RAIA 3LUIA 2CSKA 3P0CA 4ON3A 4P2IA 4OXWA 1KQ6A 2DYBA 4P2JA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4HAS A;  3HPB A;  1H6H A;  2RED A;  1XTE A;  1OCS A;  4PZG A;  4AZ9 A;  4IKB B;  2RAK A;  2L73 A;  3HPC X;  1OCU A;  2CZO A;  2V14 A;  2YPS A;  2WWE A;  2V6V A;  4PQP A;  4BGJ A;  1GD5 A;  4AKV A;  1KMD A;  4IKB A;  3IQ2 A;  4IKD A;  2I4K A;  4PQO A;  2AR5 A;  1O7K A;  2ETT A;  2REA A;  2RAJ A;  3FOG A;  3DYT A;  2IWL X;  1XTN A;  2RAI A;  3LUI A;  2CSK A;  3P0C A;  4ON3 A;  4P2I A;  4OXW A;  1KQ6 A;  2DYB A;  4P2J A; 
#chains in the Genus database with same CATH topology
 4HAS A;  3HPB A;  1H6H A;  2RED A;  1XTE A;  1OCS A;  4PZG A;  4AZ9 A;  4IKB B;  2RAK A;  2L73 A;  3HPC X;  1OCU A;  2CZO A;  2V14 A;  2YPS A;  2WWE A;  2V6V A;  4PQP A;  4BGJ A;  1GD5 A;  4AKV A;  1KMD A;  4IKB A;  3IQ2 A;  4IKD A;  2I4K A;  4PQO A;  2AR5 A;  1O7K A;  2ETT A;  2REA A;  2RAJ A;  3FOG A;  3DYT A;  2IWL X;  1XTN A;  2RAI A;  3LUI A;  2CSK A;  3P0C A;  4ON3 A;  4P2I A;  4OXW A;  1KQ6 A;  2DYB A;  4P2J A; 
#chains in the Genus database with same CATH homology
 4HAS A;  3HPB A;  1H6H A;  2RED A;  1XTE A;  1OCS A;  4PZG A;  4AZ9 A;  4IKB B;  2RAK A;  2L73 A;  3HPC X;  1OCU A;  2CZO A;  2V14 A;  2YPS A;  2WWE A;  2V6V A;  4PQP A;  4BGJ A;  1GD5 A;  4AKV A;  1KMD A;  4IKB A;  3IQ2 A;  4IKD A;  2I4K A;  4PQO A;  2AR5 A;  1O7K A;  2ETT A;  2REA A;  2RAJ A;  3FOG A;  3DYT A;  2IWL X;  1XTN A;  2RAI A;  3LUI A;  2CSK A;  3P0C A;  4ON3 A;  4P2I A;  4OXW A;  1KQ6 A;  2DYB A;  4P2J A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3IQ2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations