3LBZ | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	122
structure length	122
Chain Sequence	SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	A small-molecule inhibitor of BCL6 kills DLBCL cells in vitro and in vivo. pubmed doi rcsb
molecule keywords	B-cell lymphoma 6 protein
total genus	42
structure length	122
sequence length	122
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-01-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3lbzA00

1A68A 3BIMA 5DAFA 4AP2A 5A15A 1R2BA 4U2NA 1EXBE 3C6NA 5A6RA 3E4UA 2P1OA 4W9FB 1NEXA 3OHVA 3OGKA 3HVEB 3V7DA 5BXBA 2IF5A 2MA9C 2JZ3C 2P1QA 3LUTB 2E32B 3C6PA 1FQVB 1LDKD 2E31B 2VKPA 4WQOC 4BGCA 1VCBB 3ZRFB 3HQIA 4APFA 2P1PA 1BUOA 5FTAA 5HYWB 1LM8C 4CXIA 2P1MA 4W9CB 3B84A 2C9WC 3HVEA 1S1GA 3MKSA 3ZUNB 4W9KB 4W9HH 4BKSB 1R29A 1NN7A 3M5BA 3HU6A 4J8ZA 5IBKA 1LQBB 2IZVC 2R9RB 5BXDA 3WSOB 5JH5B 4W9DB 2A79B 2YY9A 3M4TA 4AJYC 4ZOUA 5HZGC 3LBZA 4CXTA 3C6OA 2OVPA 1EODA 3LNMB 5DADA 4JGHC 3L2OA 4UIJA 3HTMA 1R28A 4W9EB 4N9F5 2PPIA 3FKCA 3ZKJB 2IHCA 1QDVA 3M8VA 1EOFA 1QDWA 3OGMA 2NN2A 5LLIB 1FS2B 2Z8HA 4AWJB 3OGLA 3I3NA 2ASSA 1FS1B 2Q81A 2I2RA 3M52A 4W9JB 1CS3A 3ZNGB 3OHUA 3KVTA 3ZRCB 4W9IB 4CP3A 2OVQA 1HV2A 2VPKA 4U2MA 3ZTDB 5BO4C 4I6JC 1P22B 4B9KB 4HXIA 2FNJC 4JTAB 4U77A 5EUPA 4EOZA 4W9HB 2OVRA 1EOEA 2NZ0B 4W9GB 2P1NA 5H7HA 3DCGB 4UYIA 5BXHA 3DRZA 4JTDB 5H7GA 4BKTB 4CRHA 4W9LB 1T1DA 2ASTA 4B9KE 3GA1A 3ZTCB 4JTCB 4B95B 4CXJA 1DSXA
chains in the Genus database with same CATH superfamily

1A68A 3BIMA 5DAFA 4AP2A 5A15A 1R2BA 4U2NA 1EXBE 3C6NA 5A6RA 3DRXA 2P1OA 3E4UA 4W9FB 1NEXA 3OHVA 3OGKA 3HVEB 3V7DA 5BXBA 2IF5A 2MA9C 2JZ3C 2P1QA 3LUTB 2E32B 3C6PA 4ZGCA 1FQVB 4YY8A 1LDKD 2E31B 2VKPA 4WQOC 4BGCA 1VCBB 3ZRFB 3HQIA 4APFA 2P1PA 1BUOA 5FTAA 5HYWB 1LM8C 4CXIA 2P1MA 4W9CB 3B84A 2C9WC 3HVEA 1S1GA 3MKSA 3ZUNB 4W9KB 4W9HH 4BKSB 1R29A 1NN7A 3M5BA 3HU6A 4J8ZA 5IBKA 1LQBB 2IZVC 2R9RB 5BXDA 3WSOB 5JH5B 4W9DB 2A79B 2YY9A 3M4TA 4AJYC 4ZOUA 5HZGC 3LBZA 4CXTA 3C6OA 2OVPA 1EODA 3LNMB 5DADA 4JGHC 3L2OA 4UIJA 3HTMA 1R28A 4W9EB 4N9F5 2PPIA 3FKCA 3ZKJB 2IHCA 1QDVA 3M8VA 1EOFA 1QDWA 3OGMA 2NN2A 5LLIB 1FS2B 2Z8HA 4AWJB 3OGLA 3I3NA 2ASSA 1FS1B 2Q81A 2I2RA 3M52A 4W9JB 1CS3A 3ZNGB 3OHUA 3KVTA 3ZRCB 4W9IB 4CP3A 2OVQA 1HV2A 2VPKA 4U2MA 3ZTDB 5BO4C 4I6JC 1P22B 4B9KB 4HXIA 2FNJC 4JTAB 4U77A 5EUPA 4EOZA 4W9HB 2OVRA 1EOEA 2NZ0B 4W9GB 2P1NA 5H7HA 3DCGB 4UYIA 5BXHA 3DRZA 4JTDB 5H7GA 4BKTB 4CRHA 4W9LB 1T1DA 2ASTA 3DRYA 4B9KE 3GA1A 3ZTCB 4JTCB 4B95B 4CXJA 1DSXA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1A68 A;  3BIM A;  5DAF A;  4AP2 A;  5A15 A;  1R2B A;  4U2N A;  1EXB E;  3C6N A;  5A6R A;  3E4U A;  2P1O A;  4W9F B;  1NEX A;  3OHV A;  3OGK A;  3HVE B;  3V7D A;  5BXB A;  2IF5 A;  2MA9 C;  2JZ3 C;  2P1Q A;  3LUT B;  2E32 B;  3C6P A;  1FQV B;  1LDK D;  2E31 B;  2VKP A;  4WQO C;  4BGC A;  1VCB B;  3ZRF B;  3HQI A;  4APF A;  2P1P A;  1BUO A;  5FTA A;  5HYW B;  1LM8 C;  4CXI A;  2P1M A;  4W9C B;  3B84 A;  2C9W C;  3HVE A;  1S1G A;  3MKS A;  3ZUN B;  4W9K B;  4W9H H;  4BKS B;  1R29 A;  1NN7 A;  3M5B A;  3HU6 A;  4J8Z A;  5IBK A;  1LQB B;  2IZV C;  2R9R B;  5BXD A;  3WSO B;  5JH5 B;  4W9D B;  2A79 B;  2YY9 A;  3M4T A;  4AJY C;  4ZOU A;  5HZG C;  3LBZ A;  4CXT A;  3C6O A;  2OVP A;  1EOD A;  3LNM B;  5DAD A;  4JGH C;  3L2O A;  4UIJ A;  3HTM A;  1R28 A;  4W9E B;  4N9F 5;  2PPI A;  3FKC A;  3ZKJ B;  2IHC A;  1QDV A;  3M8V A;  1EOF A;  1QDW A;  3OGM A;  2NN2 A;  5LLI B;  1FS2 B;  2Z8H A;  4AWJ B;  3OGL A;  3I3N A;  2ASS A;  1FS1 B;  2Q81 A;  2I2R A;  3M52 A;  4W9J B;  1CS3 A;  3ZNG B;  3OHU A;  3KVT A;  3ZRC B;  4W9I B;  4CP3 A;  2OVQ A;  1HV2 A;  2VPK A;  4U2M A;  3ZTD B;  5BO4 C;  4I6J C;  1P22 B;  4B9K B;  4HXI A;  2FNJ C;  4JTA B;  4U77 A;  5EUP A;  4EOZ A;  4W9H B;  2OVR A;  1EOE A;  2NZ0 B;  4W9G B;  2P1N A;  5H7H A;  3DCG B;  4UYI A;  5BXH A;  3DRZ A;  4JTD B;  5H7G A;  4BKT B;  4CRH A;  4W9L B;  1T1D A;  2AST A;  4B9K E;  3GA1 A;  3ZTC B;  4JTC B;  4B95 B;  4CXJ A;  1DSX A; 
#chains in the Genus database with same CATH topology
 1A68 A;  3BIM A;  5DAF A;  4AP2 A;  5A15 A;  1R2B A;  4U2N A;  1EXB E;  3C6N A;  5A6R A;  3DRX A;  2P1O A;  3E4U A;  4W9F B;  1NEX A;  3OHV A;  3OGK A;  3HVE B;  3V7D A;  5BXB A;  2IF5 A;  2MA9 C;  2JZ3 C;  2P1Q A;  3LUT B;  2E32 B;  3C6P A;  4ZGC A;  1FQV B;  4YY8 A;  1LDK D;  2E31 B;  2VKP A;  4WQO C;  4BGC A;  1VCB B;  3ZRF B;  3HQI A;  4APF A;  2P1P A;  1BUO A;  5FTA A;  5HYW B;  1LM8 C;  4CXI A;  2P1M A;  4W9C B;  3B84 A;  2C9W C;  3HVE A;  1S1G A;  3MKS A;  3ZUN B;  4W9K B;  4W9H H;  4BKS B;  1R29 A;  1NN7 A;  3M5B A;  3HU6 A;  4J8Z A;  5IBK A;  1LQB B;  2IZV C;  2R9R B;  5BXD A;  3WSO B;  5JH5 B;  4W9D B;  2A79 B;  2YY9 A;  3M4T A;  4AJY C;  4ZOU A;  5HZG C;  3LBZ A;  4CXT A;  3C6O A;  2OVP A;  1EOD A;  3LNM B;  5DAD A;  4JGH C;  3L2O A;  4UIJ A;  3HTM A;  1R28 A;  4W9E B;  4N9F 5;  2PPI A;  3FKC A;  3ZKJ B;  2IHC A;  1QDV A;  3M8V A;  1EOF A;  1QDW A;  3OGM A;  2NN2 A;  5LLI B;  1FS2 B;  2Z8H A;  4AWJ B;  3OGL A;  3I3N A;  2ASS A;  1FS1 B;  2Q81 A;  2I2R A;  3M52 A;  4W9J B;  1CS3 A;  3ZNG B;  3OHU A;  3KVT A;  3ZRC B;  4W9I B;  4CP3 A;  2OVQ A;  1HV2 A;  2VPK A;  4U2M A;  3ZTD B;  5BO4 C;  4I6J C;  1P22 B;  4B9K B;  4HXI A;  2FNJ C;  4JTA B;  4U77 A;  5EUP A;  4EOZ A;  4W9H B;  2OVR A;  1EOE A;  2NZ0 B;  4W9G B;  2P1N A;  5H7H A;  3DCG B;  4UYI A;  5BXH A;  3DRZ A;  4JTD B;  5H7G A;  4BKT B;  4CRH A;  4W9L B;  1T1D A;  2AST A;  3DRY A;  4B9K E;  3GA1 A;  3ZTC B;  4JTC B;  4B95 B;  4CXJ A;  1DSX A; 
#chains in the Genus database with same CATH homology
 1A68 A;  3BIM A;  5DAF A;  4AP2 A;  5A15 A;  1R2B A;  4U2N A;  1EXB E;  3C6N A;  5A6R A;  3DRX A;  2P1O A;  3E4U A;  4W9F B;  1NEX A;  3OHV A;  3OGK A;  3HVE B;  3V7D A;  5BXB A;  2IF5 A;  2MA9 C;  2JZ3 C;  2P1Q A;  3LUT B;  2E32 B;  3C6P A;  4ZGC A;  1FQV B;  4YY8 A;  1LDK D;  2E31 B;  2VKP A;  4WQO C;  4BGC A;  1VCB B;  3ZRF B;  3HQI A;  4APF A;  2P1P A;  1BUO A;  5FTA A;  5HYW B;  1LM8 C;  4CXI A;  2P1M A;  4W9C B;  3B84 A;  2C9W C;  3HVE A;  1S1G A;  3MKS A;  3ZUN B;  4W9K B;  4W9H H;  4BKS B;  1R29 A;  1NN7 A;  3M5B A;  3HU6 A;  4J8Z A;  5IBK A;  1LQB B;  2IZV C;  2R9R B;  5BXD A;  3WSO B;  5JH5 B;  4W9D B;  2A79 B;  2YY9 A;  3M4T A;  4AJY C;  4ZOU A;  5HZG C;  3LBZ A;  4CXT A;  3C6O A;  2OVP A;  1EOD A;  3LNM B;  5DAD A;  4JGH C;  3L2O A;  4UIJ A;  3HTM A;  1R28 A;  4W9E B;  4N9F 5;  2PPI A;  3FKC A;  3ZKJ B;  2IHC A;  1QDV A;  3M8V A;  1EOF A;  1QDW A;  3OGM A;  2NN2 A;  5LLI B;  1FS2 B;  2Z8H A;  4AWJ B;  3OGL A;  3I3N A;  2ASS A;  1FS1 B;  2Q81 A;  2I2R A;  3M52 A;  4W9J B;  1CS3 A;  3ZNG B;  3OHU A;  3KVT A;  3ZRC B;  4W9I B;  4CP3 A;  2OVQ A;  1HV2 A;  2VPK A;  4U2M A;  3ZTD B;  5BO4 C;  4I6J C;  1P22 B;  4B9K B;  4HXI A;  2FNJ C;  4JTA B;  4U77 A;  5EUP A;  4EOZ A;  4W9H B;  2OVR A;  1EOE A;  2NZ0 B;  4W9G B;  2P1N A;  5H7H A;  3DCG B;  4UYI A;  5BXH A;  3DRZ A;  4JTD B;  5H7G A;  4BKT B;  4CRH A;  4W9L B;  1T1D A;  2AST A;  3DRY A;  4B9K E;  3GA1 A;  3ZTC B;  4JTC B;  4B95 B;  4CXJ A;  1DSX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LBZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations