3LUI | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	109
structure length	104
Chain Sequence	HFSIPETESRSSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 104 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Phox homology band 4.1/ezrin/radixin/moesin-like proteins function as molecular scaffolds that interact with cargo receptors and Ras GTPases pubmed doi rcsb
molecule keywords	Sorting nexin-17
total genus	34
structure length	104
sequence length	109
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2010-02-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	3luiA00

1H6HA 2I4KA 2IWLX 3HPBA 4ON3A 2REAA 4OXWA 2AR5A 4PQPA 4AZ9A 4IKBB 4PZGA 3FOGA 2L73A 2ETTA 2V14A 4P2JA 1O7KA 1XTEA 1KQ6A 2CZOA 1OCSA 3HPCX 1OCUA 2RAJA 4P2IA 2DYBA 3P0CA 2RAIA 1XTNA 4IKDA 4PQOA 4IKBA 1KMDA 2WWEA 2RAKA 3IQ2A 4HASA 2CSKA 2V6VA 4BGJA 3LUIA 1GD5A 2YPSA 4AKVA 2REDA 3DYTA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1H6H A;  2I4K A;  2IWL X;  3HPB A;  4ON3 A;  2REA A;  4OXW A;  2AR5 A;  4PQP A;  4AZ9 A;  4IKB B;  4PZG A;  3FOG A;  2L73 A;  2ETT A;  2V14 A;  4P2J A;  1O7K A;  1XTE A;  1KQ6 A;  2CZO A;  1OCS A;  3HPC X;  1OCU A;  2RAJ A;  4P2I A;  2DYB A;  3P0C A;  2RAI A;  1XTN A;  4IKD A;  4PQO A;  4IKB A;  1KMD A;  2WWE A;  2RAK A;  3IQ2 A;  4HAS A;  2CSK A;  2V6V A;  4BGJ A;  3LUI A;  1GD5 A;  2YPS A;  4AKV A;  2RED A;  3DYT A; 
#chains in the Genus database with same CATH topology
 1H6H A;  2I4K A;  2IWL X;  3HPB A;  4ON3 A;  2REA A;  4OXW A;  2AR5 A;  4PQP A;  4AZ9 A;  4IKB B;  4PZG A;  3FOG A;  2L73 A;  2ETT A;  2V14 A;  4P2J A;  1O7K A;  1XTE A;  1KQ6 A;  2CZO A;  1OCS A;  3HPC X;  1OCU A;  2RAJ A;  4P2I A;  2DYB A;  3P0C A;  2RAI A;  1XTN A;  4IKD A;  4PQO A;  4IKB A;  1KMD A;  2WWE A;  2RAK A;  3IQ2 A;  4HAS A;  2CSK A;  2V6V A;  4BGJ A;  3LUI A;  1GD5 A;  2YPS A;  4AKV A;  2RED A;  3DYT A; 
#chains in the Genus database with same CATH homology
 1H6H A;  2I4K A;  2IWL X;  3HPB A;  4ON3 A;  2REA A;  4OXW A;  2AR5 A;  4PQP A;  4AZ9 A;  4IKB B;  4PZG A;  3FOG A;  2L73 A;  2ETT A;  2V14 A;  4P2J A;  1O7K A;  1XTE A;  1KQ6 A;  2CZO A;  1OCS A;  3HPC X;  1OCU A;  2RAJ A;  4P2I A;  2DYB A;  3P0C A;  2RAI A;  1XTN A;  4IKD A;  4PQO A;  4IKB A;  1KMD A;  2WWE A;  2RAK A;  3IQ2 A;  4HAS A;  2CSK A;  2V6V A;  4BGJ A;  3LUI A;  1GD5 A;  2YPS A;  4AKV A;  2RED A;  3DYT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LUIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations