3MZZA

Crystal structure of rhodanese-like domain protein from staphylococcus aureus
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
103
structure length
103
Chain Sequence
MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKSI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Rhodanese-like Domain Protein from Staphylococcus aureus
rcsb
molecule tags Unknown function
source organism Staphylococcus aureus
molecule keywords Rhodanese-like domain protein
total genus 26
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2010-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 3mzzA00
1CWTA 1WV9A 4JGTA 1H4KX 3ICSA 2FSXA 1VEEA 3IPOA 3HIXA 2WLRA 2OUCA 3FLHA 1UARA 1RHDA 1YMKA 2EG4B 1GN0A 5LAOA 5HPAA 3ICRA 3FS5A 1TQ1A 2EG4A 3P3AA 5HBPA 3G5JA 1YMLA 3NT6A 1YS0A 1GMXA 3HZUA 3AAYA 3IPPA 3OLHA 1QXNA 3K9RA 2IFDA 3TG3A 5LAMA 1T3KA 3MZZA 2GWFA 3FNJA 1BOIA 3OP3A 2WLXA 1BOHA 1URHA 2K0ZA 1H4MX 1WHBA 5HBOA 2DCQA 3NHVA 2JTQA 3F4AA 2EG3A 1YMDA 4WH7A 1CWSA 2UZQA 3NTAA 1C25A 3IWHA 1QB0A 1YM9A 3R2UA 5HBLA 2MRMA 3ICTA 3NTDA 4F67A 3GK5A 2JTRA 2ORAA 3TG1B 1YT8A 2JTSA 2MOLA 5HBQA 2MOIA 3O3WA 1CWRA 1HZMA 1E0CA 3ILMA 2IFVA 1DP2A 3FOJA 3I2VA 2HHGA 2J6PA 4OCGA 3AAXA 3I3UA 1RHSA 2A2KA 3UTNX 2VSWA 3HWIA 3TP9A 1ORBA 4WH9A 2KL3A 3D1PA 1OKGA
chains in the Genus database with same CATH superfamily
1CWTA 1WV9A 4JGTA 1H4KX 3ICSA 2FSXA 1VEEA 3IPOA 3HIXA 2WLRA 2OUCA 3FLHA 1UARA 1RHDA 1YMKA 2EG4B 1GN0A 5LAOA 5HPAA 3ICRA 3FS5A 1TQ1A 2EG4A 3P3AA 5HBPA 3G5JA 1YMLA 3NT6A 1YS0A 1GMXA 3HZUA 3AAYA 3IPPA 3OLHA 1QXNA 3K9RA 2IFDA 3TG3A 5LAMA 1T3KA 3MZZA 2GWFA 3FNJA 1BOIA 3OP3A 2WLXA 1BOHA 1URHA 2K0ZA 1H4MX 1WHBA 5HBOA 2DCQA 3NHVA 2JTQA 3F4AA 2EG3A 1YMDA 4WH7A 1CWSA 2UZQA 3NTAA 1C25A 3IWHA 1QB0A 1YM9A 3R2UA 5HBLA 2MRMA 3ICTA 3NTDA 4F67A 3GK5A 2JTRA 2ORAA 3TG1B 1YT8A 2JTSA 2MOLA 5HBQA 2MOIA 3O3WA 1CWRA 1HZMA 1E0CA 3ILMA 2IFVA 1DP2A 3FOJA 3I2VA 2Q82A 2HHGA 2J6PA 4OCGA 3AAXA 3I3UA 1RHSA 2A2KA 3UTNX 2VSWA 3HWIA 3TP9A 1ORBA 4WH9A 2KL3A 3D1PA 1OKGA
chains in the Genus database with same CATH topology
1CWTA 1WV9A 4JGTA 1H4KX 3ICSA 2FSXA 1VEEA 3IPOA 3HIXA 2WLRA 2OUCA 3FLHA 1UARA 1RHDA 1YMKA 2EG4B 1GN0A 5LAOA 5HPAA 3ICRA 3FS5A 1TQ1A 2EG4A 3P3AA 5HBPA 3G5JA 1YMLA 3NT6A 1YS0A 1GMXA 3HZUA 3AAYA 3IPPA 3OLHA 1QXNA 3K9RA 2IFDA 3TG3A 5LAMA 1T3KA 3MZZA 2GWFA 3FNJA 1BOIA 3OP3A 2WLXA 1BOHA 1URHA 2K0ZA 1H4MX 1WHBA 5HBOA 2DCQA 3NHVA 2JTQA 3F4AA 2EG3A 1YMDA 4WH7A 1CWSA 2UZQA 3NTAA 1C25A 3IWHA 1QB0A 1YM9A 3R2UA 5HBLA 2MRMA 3ICTA 3NTDA 4F67A 3GK5A 2JTRA 2ORAA 3TG1B 1YT8A 2JTSA 2MOLA 5HBQA 2MOIA 3O3WA 1CWRA 1HZMA 1E0CA 3ILMA 2IFVA 1DP2A 3FOJA 3I2VA 2HHGA 2J6PA 4OCGA 3AAXA 3I3UA 1RHSA 2A2KA 3UTNX 2VSWA 3HWIA 3TP9A 1ORBA 4WH9A 2KL3A 3D1PA 1OKGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CWT A;  1WV9 A;  4JGT A;  1H4K X;  3ICS A;  2FSX A;  1VEE A;  3IPO A;  3HIX A;  2WLR A;  2OUC A;  3FLH A;  1UAR A;  1RHD A;  1YMK A;  2EG4 B;  1GN0 A;  5LAO A;  5HPA A;  3ICR A;  3FS5 A;  1TQ1 A;  2EG4 A;  3P3A A;  5HBP A;  3G5J A;  1YML A;  3NT6 A;  1YS0 A;  1GMX A;  3HZU A;  3AAY A;  3IPP A;  3OLH A;  1QXN A;  3K9R A;  2IFD A;  3TG3 A;  5LAM A;  1T3K A;  3MZZ A;  2GWF A;  3FNJ A;  1BOI A;  3OP3 A;  2WLX A;  1BOH A;  1URH A;  2K0Z A;  1H4M X;  1WHB A;  5HBO A;  2DCQ A;  3NHV A;  2JTQ A;  3F4A A;  2EG3 A;  1YMD A;  4WH7 A;  1CWS A;  2UZQ A;  3NTA A;  1C25 A;  3IWH A;  1QB0 A;  1YM9 A;  3R2U A;  5HBL A;  2MRM A;  3ICT A;  3NTD A;  4F67 A;  3GK5 A;  2JTR A;  2ORA A;  3TG1 B;  1YT8 A;  2JTS A;  2MOL A;  5HBQ A;  2MOI A;  3O3W A;  1CWR A;  1HZM A;  1E0C A;  3ILM A;  2IFV A;  1DP2 A;  3FOJ A;  3I2V A;  2HHG A;  2J6P A;  4OCG A;  3AAX A;  3I3U A;  1RHS A;  2A2K A;  3UTN X;  2VSW A;  3HWI A;  3TP9 A;  1ORB A;  4WH9 A;  2KL3 A;  3D1P A;  1OKG A; 
#chains in the Genus database with same CATH topology
 1CWT A;  1WV9 A;  4JGT A;  1H4K X;  3ICS A;  2FSX A;  1VEE A;  3IPO A;  3HIX A;  2WLR A;  2OUC A;  3FLH A;  1UAR A;  1RHD A;  1YMK A;  2EG4 B;  1GN0 A;  5LAO A;  5HPA A;  3ICR A;  3FS5 A;  1TQ1 A;  2EG4 A;  3P3A A;  5HBP A;  3G5J A;  1YML A;  3NT6 A;  1YS0 A;  1GMX A;  3HZU A;  3AAY A;  3IPP A;  3OLH A;  1QXN A;  3K9R A;  2IFD A;  3TG3 A;  5LAM A;  1T3K A;  3MZZ A;  2GWF A;  3FNJ A;  1BOI A;  3OP3 A;  2WLX A;  1BOH A;  1URH A;  2K0Z A;  1H4M X;  1WHB A;  5HBO A;  2DCQ A;  3NHV A;  2JTQ A;  3F4A A;  2EG3 A;  1YMD A;  4WH7 A;  1CWS A;  2UZQ A;  3NTA A;  1C25 A;  3IWH A;  1QB0 A;  1YM9 A;  3R2U A;  5HBL A;  2MRM A;  3ICT A;  3NTD A;  4F67 A;  3GK5 A;  2JTR A;  2ORA A;  3TG1 B;  1YT8 A;  2JTS A;  2MOL A;  5HBQ A;  2MOI A;  3O3W A;  1CWR A;  1HZM A;  1E0C A;  3ILM A;  2IFV A;  1DP2 A;  3FOJ A;  3I2V A;  2Q82 A;  2HHG A;  2J6P A;  4OCG A;  3AAX A;  3I3U A;  1RHS A;  2A2K A;  3UTN X;  2VSW A;  3HWI A;  3TP9 A;  1ORB A;  4WH9 A;  2KL3 A;  3D1P A;  1OKG A; 
#chains in the Genus database with same CATH homology
 1CWT A;  1WV9 A;  4JGT A;  1H4K X;  3ICS A;  2FSX A;  1VEE A;  3IPO A;  3HIX A;  2WLR A;  2OUC A;  3FLH A;  1UAR A;  1RHD A;  1YMK A;  2EG4 B;  1GN0 A;  5LAO A;  5HPA A;  3ICR A;  3FS5 A;  1TQ1 A;  2EG4 A;  3P3A A;  5HBP A;  3G5J A;  1YML A;  3NT6 A;  1YS0 A;  1GMX A;  3HZU A;  3AAY A;  3IPP A;  3OLH A;  1QXN A;  3K9R A;  2IFD A;  3TG3 A;  5LAM A;  1T3K A;  3MZZ A;  2GWF A;  3FNJ A;  1BOI A;  3OP3 A;  2WLX A;  1BOH A;  1URH A;  2K0Z A;  1H4M X;  1WHB A;  5HBO A;  2DCQ A;  3NHV A;  2JTQ A;  3F4A A;  2EG3 A;  1YMD A;  4WH7 A;  1CWS A;  2UZQ A;  3NTA A;  1C25 A;  3IWH A;  1QB0 A;  1YM9 A;  3R2U A;  5HBL A;  2MRM A;  3ICT A;  3NTD A;  4F67 A;  3GK5 A;  2JTR A;  2ORA A;  3TG1 B;  1YT8 A;  2JTS A;  2MOL A;  5HBQ A;  2MOI A;  3O3W A;  1CWR A;  1HZM A;  1E0C A;  3ILM A;  2IFV A;  1DP2 A;  3FOJ A;  3I2V A;  2HHG A;  2J6P A;  4OCG A;  3AAX A;  3I3U A;  1RHS A;  2A2K A;  3UTN X;  2VSW A;  3HWI A;  3TP9 A;  1ORB A;  4WH9 A;  2KL3 A;  3D1P A;  1OKG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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