3OGL | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	156
structure length	144
Chain Sequence	KIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAADDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Arabidopsis thaliana
publication title	Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. pubmed doi rcsb
molecule keywords	SKP1-like protein 1A
total genus	42
structure length	144
sequence length	156
chains with identical sequence	C, E, G, I, K, M, O
ec nomenclature
pdb deposition date	2010-08-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01466	Skp1	Skp1 family, dimerisation domain
A	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3oglA00

1T1DA 3OHVA 4HXIA 2NZ0B 5BXBA 3BIMA 4W9DB 4I6JC 2PPIA 1FS2B 1VCBB 3HQIA 3V7DA 2VPKA 4N9F5 2A79B 3DRZA 5DADA 3B84A 4U2NA 5HYWB 5BO4C 3WSOB 1QDWA 1DSXA 2Z8HA 2ASTA 2YY9A 3C6NA 5A6RA 2P1NA 4AJYC 2OVQA 4W9LB 3C6PA 3LUTB 4B9KB 1P22B 4W9HH 4W9EB 4B95B 2E32B 4W9KB 5DAFA 2IF5A 4UIJA 1CS3A 1R28A 1R29A 1FS1B 3LBZA 4U2MA 4W9IB 3I3NA 4W9GB 1LM8C 1EODA 3ZTCB 4BKSB 3ZUNB 4CRHA 5BXDA 5FTAA 4EOZA 1EXBE 4APFA 1NEXA 3M4TA 4B9KE 3OHUA 4W9HB 3OGKA 2C9WC 4JTDB 4UYIA 3C6OA 3LNMB 1S1GA 3ZKJB 3HVEA 2P1QA 2I2RA 4CXTA 4J8ZA 5H7HA 3ZTDB 3L2OA 3KVTA 4W9FB 4ZOUA 3FKCA 1HV2A 4AP2A 3HU6A 5JH5B 4WQOC 1EOEA 3HVEB 3ZRFB 5A15A 1FQVB 4W9CB 1BUOA 4W9JB 2IHCA 4AWJB 1EOFA 3ZRCB 2IZVC 5LLIB 4CXIA 2P1MA 3M52A 4JGHC 5IBKA 3HTMA 3OGMA 5BXHA 1LDKD 3MKSA 3M5BA 2OVRA 3M8VA 2E31B 1NN7A 2Q81A 5HZGC 2P1OA 4BKTB 2MA9C 1LQBB 4JTCB 1R2BA 5EUPA 1A68A 2FNJC 2P1PA 4BGCA 1QDVA 3DCGB 2JZ3C 5H7GA 3OGLA 2R9RB 2OVPA 2ASSA 4CXJA 3ZNGB 4CP3A 4JTAB 2VKPA 2NN2A 3E4UA 4U77A 3GA1A
chains in the Genus database with same CATH superfamily

1T1DA 3DRYA 3OHVA 4HXIA 2NZ0B 5BXBA 3BIMA 4W9DB 4I6JC 2PPIA 1FS2B 1VCBB 3HQIA 3V7DA 2VPKA 4N9F5 2A79B 3DRZA 5DADA 3B84A 4U2NA 5HYWB 5BO4C 3WSOB 1QDWA 1DSXA 2Z8HA 2ASTA 2YY9A 3C6NA 5A6RA 2P1NA 4AJYC 2OVQA 4W9LB 3C6PA 3LUTB 4B9KB 1P22B 4W9HH 4W9EB 4B95B 2E32B 4W9KB 5DAFA 2IF5A 4UIJA 1CS3A 1R28A 1R29A 1FS1B 3LBZA 4U2MA 4W9IB 3I3NA 4W9GB 1LM8C 1EODA 3ZTCB 4BKSB 3ZUNB 4CRHA 5BXDA 5FTAA 4EOZA 1EXBE 4APFA 1NEXA 3DRXA 3M4TA 4B9KE 3OHUA 4W9HB 3OGKA 2C9WC 4JTDB 4UYIA 3C6OA 3LNMB 1S1GA 3ZKJB 3HVEA 2P1QA 2I2RA 4CXTA 4J8ZA 5H7HA 3ZTDB 3L2OA 3KVTA 4W9FB 4ZOUA 4YY8A 3FKCA 1HV2A 4AP2A 3HU6A 4ZGCA 5JH5B 4WQOC 1EOEA 3HVEB 3ZRFB 5A15A 1FQVB 4W9CB 1BUOA 4W9JB 2IHCA 4AWJB 1EOFA 3ZRCB 2IZVC 5LLIB 4CXIA 2P1MA 3M52A 4JGHC 5IBKA 3HTMA 3OGMA 5BXHA 1LDKD 3MKSA 3M5BA 2OVRA 3M8VA 2E31B 1NN7A 2Q81A 5HZGC 2P1OA 4BKTB 2MA9C 1LQBB 4JTCB 1R2BA 5EUPA 1A68A 2FNJC 2P1PA 4BGCA 1QDVA 3DCGB 2JZ3C 5H7GA 3OGLA 2R9RB 2OVPA 2ASSA 4CXJA 3ZNGB 4CP3A 4JTAB 2VKPA 2NN2A 3E4UA 4U77A 3GA1A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1T1D A;  3OHV A;  4HXI A;  2NZ0 B;  5BXB A;  3BIM A;  4W9D B;  4I6J C;  2PPI A;  1FS2 B;  1VCB B;  3HQI A;  3V7D A;  2VPK A;  4N9F 5;  2A79 B;  3DRZ A;  5DAD A;  3B84 A;  4U2N A;  5HYW B;  5BO4 C;  3WSO B;  1QDW A;  1DSX A;  2Z8H A;  2AST A;  2YY9 A;  3C6N A;  5A6R A;  2P1N A;  4AJY C;  2OVQ A;  4W9L B;  3C6P A;  3LUT B;  4B9K B;  1P22 B;  4W9H H;  4W9E B;  4B95 B;  2E32 B;  4W9K B;  5DAF A;  2IF5 A;  4UIJ A;  1CS3 A;  1R28 A;  1R29 A;  1FS1 B;  3LBZ A;  4U2M A;  4W9I B;  3I3N A;  4W9G B;  1LM8 C;  1EOD A;  3ZTC B;  4BKS B;  3ZUN B;  4CRH A;  5BXD A;  5FTA A;  4EOZ A;  1EXB E;  4APF A;  1NEX A;  3M4T A;  4B9K E;  3OHU A;  4W9H B;  3OGK A;  2C9W C;  4JTD B;  4UYI A;  3C6O A;  3LNM B;  1S1G A;  3ZKJ B;  3HVE A;  2P1Q A;  2I2R A;  4CXT A;  4J8Z A;  5H7H A;  3ZTD B;  3L2O A;  3KVT A;  4W9F B;  4ZOU A;  3FKC A;  1HV2 A;  4AP2 A;  3HU6 A;  5JH5 B;  4WQO C;  1EOE A;  3HVE B;  3ZRF B;  5A15 A;  1FQV B;  4W9C B;  1BUO A;  4W9J B;  2IHC A;  4AWJ B;  1EOF A;  3ZRC B;  2IZV C;  5LLI B;  4CXI A;  2P1M A;  3M52 A;  4JGH C;  5IBK A;  3HTM A;  3OGM A;  5BXH A;  1LDK D;  3MKS A;  3M5B A;  2OVR A;  3M8V A;  2E31 B;  1NN7 A;  2Q81 A;  5HZG C;  2P1O A;  4BKT B;  2MA9 C;  1LQB B;  4JTC B;  1R2B A;  5EUP A;  1A68 A;  2FNJ C;  2P1P A;  4BGC A;  1QDV A;  3DCG B;  2JZ3 C;  5H7G A;  3OGL A;  2R9R B;  2OVP A;  2ASS A;  4CXJ A;  3ZNG B;  4CP3 A;  4JTA B;  2VKP A;  2NN2 A;  3E4U A;  4U77 A;  3GA1 A; 
#chains in the Genus database with same CATH topology
 1T1D A;  3DRY A;  3OHV A;  4HXI A;  2NZ0 B;  5BXB A;  3BIM A;  4W9D B;  4I6J C;  2PPI A;  1FS2 B;  1VCB B;  3HQI A;  3V7D A;  2VPK A;  4N9F 5;  2A79 B;  3DRZ A;  5DAD A;  3B84 A;  4U2N A;  5HYW B;  5BO4 C;  3WSO B;  1QDW A;  1DSX A;  2Z8H A;  2AST A;  2YY9 A;  3C6N A;  5A6R A;  2P1N A;  4AJY C;  2OVQ A;  4W9L B;  3C6P A;  3LUT B;  4B9K B;  1P22 B;  4W9H H;  4W9E B;  4B95 B;  2E32 B;  4W9K B;  5DAF A;  2IF5 A;  4UIJ A;  1CS3 A;  1R28 A;  1R29 A;  1FS1 B;  3LBZ A;  4U2M A;  4W9I B;  3I3N A;  4W9G B;  1LM8 C;  1EOD A;  3ZTC B;  4BKS B;  3ZUN B;  4CRH A;  5BXD A;  5FTA A;  4EOZ A;  1EXB E;  4APF A;  1NEX A;  3DRX A;  3M4T A;  4B9K E;  3OHU A;  4W9H B;  3OGK A;  2C9W C;  4JTD B;  4UYI A;  3C6O A;  3LNM B;  1S1G A;  3ZKJ B;  3HVE A;  2P1Q A;  2I2R A;  4CXT A;  4J8Z A;  5H7H A;  3ZTD B;  3L2O A;  3KVT A;  4W9F B;  4ZOU A;  4YY8 A;  3FKC A;  1HV2 A;  4AP2 A;  3HU6 A;  4ZGC A;  5JH5 B;  4WQO C;  1EOE A;  3HVE B;  3ZRF B;  5A15 A;  1FQV B;  4W9C B;  1BUO A;  4W9J B;  2IHC A;  4AWJ B;  1EOF A;  3ZRC B;  2IZV C;  5LLI B;  4CXI A;  2P1M A;  3M52 A;  4JGH C;  5IBK A;  3HTM A;  3OGM A;  5BXH A;  1LDK D;  3MKS A;  3M5B A;  2OVR A;  3M8V A;  2E31 B;  1NN7 A;  2Q81 A;  5HZG C;  2P1O A;  4BKT B;  2MA9 C;  1LQB B;  4JTC B;  1R2B A;  5EUP A;  1A68 A;  2FNJ C;  2P1P A;  4BGC A;  1QDV A;  3DCG B;  2JZ3 C;  5H7G A;  3OGL A;  2R9R B;  2OVP A;  2ASS A;  4CXJ A;  3ZNG B;  4CP3 A;  4JTA B;  2VKP A;  2NN2 A;  3E4U A;  4U77 A;  3GA1 A; 
#chains in the Genus database with same CATH homology
 1T1D A;  3DRY A;  3OHV A;  4HXI A;  2NZ0 B;  5BXB A;  3BIM A;  4W9D B;  4I6J C;  2PPI A;  1FS2 B;  1VCB B;  3HQI A;  3V7D A;  2VPK A;  4N9F 5;  2A79 B;  3DRZ A;  5DAD A;  3B84 A;  4U2N A;  5HYW B;  5BO4 C;  3WSO B;  1QDW A;  1DSX A;  2Z8H A;  2AST A;  2YY9 A;  3C6N A;  5A6R A;  2P1N A;  4AJY C;  2OVQ A;  4W9L B;  3C6P A;  3LUT B;  4B9K B;  1P22 B;  4W9H H;  4W9E B;  4B95 B;  2E32 B;  4W9K B;  5DAF A;  2IF5 A;  4UIJ A;  1CS3 A;  1R28 A;  1R29 A;  1FS1 B;  3LBZ A;  4U2M A;  4W9I B;  3I3N A;  4W9G B;  1LM8 C;  1EOD A;  3ZTC B;  4BKS B;  3ZUN B;  4CRH A;  5BXD A;  5FTA A;  4EOZ A;  1EXB E;  4APF A;  1NEX A;  3DRX A;  3M4T A;  4B9K E;  3OHU A;  4W9H B;  3OGK A;  2C9W C;  4JTD B;  4UYI A;  3C6O A;  3LNM B;  1S1G A;  3ZKJ B;  3HVE A;  2P1Q A;  2I2R A;  4CXT A;  4J8Z A;  5H7H A;  3ZTD B;  3L2O A;  3KVT A;  4W9F B;  4ZOU A;  4YY8 A;  3FKC A;  1HV2 A;  4AP2 A;  3HU6 A;  4ZGC A;  5JH5 B;  4WQO C;  1EOE A;  3HVE B;  3ZRF B;  5A15 A;  1FQV B;  4W9C B;  1BUO A;  4W9J B;  2IHC A;  4AWJ B;  1EOF A;  3ZRC B;  2IZV C;  5LLI B;  4CXI A;  2P1M A;  3M52 A;  4JGH C;  5IBK A;  3HTM A;  3OGM A;  5BXH A;  1LDK D;  3MKS A;  3M5B A;  2OVR A;  3M8V A;  2E31 B;  1NN7 A;  2Q81 A;  5HZG C;  2P1O A;  4BKT B;  2MA9 C;  1LQB B;  4JTC B;  1R2B A;  5EUP A;  1A68 A;  2FNJ C;  2P1P A;  4BGC A;  1QDV A;  3DCG B;  2JZ3 C;  5H7G A;  3OGL A;  2R9R B;  2OVP A;  2ASS A;  4CXJ A;  3ZNG B;  4CP3 A;  4JTA B;  2VKP A;  2NN2 A;  3E4U A;  4U77 A;  3GA1 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OGLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations