3OGM | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	156
structure length	144
Chain Sequence	KIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAADDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 144 atoms

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144 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Arabidopsis thaliana
publication title	Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. pubmed doi rcsb
molecule keywords	SKP1-like protein 1A
total genus	40
structure length	144
sequence length	156
chains with identical sequence	C, E, G, I, K, M, O
ec nomenclature
pdb deposition date	2010-08-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01466	Skp1	Skp1 family, dimerisation domain
A	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3ogmA00

2OVPA 4CXIA 5BXDA 3ZTCB 5HZGC 3OGKA 2VKPA 5EUPA 3ZRCB 3L2OA 5IBKA 3C6NA 2ASTA 1EOFA 3HU6A 3DCGB 5JH5B 4W9DB 4HXIA 1EOEA 3GA1A 4BGCA 5LLIB 4I6JC 2P1OA 4AWJB 2JZ3C 2MA9C 5BXHA 5DAFA 4BKTB 4B95B 4W9HB 2IHCA 3MKSA 3M5BA 4AJYC 2Q81A 1LQBB 4W9FB 1FS2B 5BXBA 3LUTB 2NN2A 4UYIA 2IF5A 1P22B 1R28A 2E32B 3ZRFB 1QDVA 1EXBE 1NEXA 3WSOB 3OGMA 4N9F5 5BO4C 2I2RA 1HV2A 2P1NA 5H7GA 1VCBB 4JTAB 4W9KB 4CXJA 2C9WC 3OGLA 2FNJC 4UIJA 2IZVC 4WQOC 3ZNGB 3KVTA 4AP2A 4W9JB 4CXTA 1CS3A 3OHUA 4W9LB 3LNMB 4CP3A 2NZ0B 1R29A 2P1MA 2OVQA 1A68A 2VPKA 2E31B 2PPIA 1BUOA 4JTCB 1DSXA 5DADA 5A6RA 2Z8HA 3C6OA 3LBZA 2P1QA 2YY9A 2R9RB 4W9HH 3ZTDB 4JGHC 2OVRA 3V7DA 3ZKJB 4B9KE 3M52A 1R2BA 4U2MA 3DRZA 5HYWB 1LDKD 5A15A 2A79B 4J8ZA 1NN7A 3C6PA 4EOZA 3I3NA 1S1GA 2ASSA 3E4UA 4W9CB 4JTDB 4BKSB 3ZUNB 1QDWA 1FQVB 3FKCA 1FS1B 3HVEB 4W9GB 4U77A 5H7HA 3M8VA 1LM8C 4CRHA 4W9IB 4ZOUA 1T1DA 4APFA 3B84A 4U2NA 3BIMA 3HQIA 3M4TA 1EODA 3HVEA 2P1PA 3HTMA 4B9KB 3OHVA 5FTAA 4W9EB
chains in the Genus database with same CATH superfamily

2OVPA 4CXIA 5BXDA 3ZTCB 5HZGC 3OGKA 2VKPA 5EUPA 3ZRCB 3L2OA 5IBKA 3C6NA 2ASTA 1EOFA 3HU6A 3DCGB 5JH5B 4W9DB 4HXIA 1EOEA 3GA1A 4BGCA 3DRYA 5LLIB 4I6JC 2P1OA 4AWJB 2JZ3C 2MA9C 5BXHA 5DAFA 4BKTB 4B95B 4W9HB 2IHCA 3MKSA 3M5BA 4AJYC 2Q81A 1LQBB 4W9FB 1FS2B 5BXBA 3LUTB 2NN2A 4UYIA 2IF5A 1P22B 1R28A 2E32B 3ZRFB 1QDVA 1EXBE 1NEXA 3WSOB 3OGMA 4N9F5 5BO4C 2I2RA 1HV2A 2P1NA 5H7GA 1VCBB 4JTAB 4W9KB 4YY8A 4CXJA 2C9WC 3OGLA 2FNJC 4UIJA 2IZVC 4WQOC 3ZNGB 3KVTA 4AP2A 4W9JB 4CXTA 1CS3A 3OHUA 4W9LB 3LNMB 4CP3A 2NZ0B 4ZGCA 1R29A 2P1MA 2OVQA 1A68A 2VPKA 3DRXA 2E31B 2PPIA 1BUOA 4JTCB 1DSXA 5DADA 5A6RA 2Z8HA 3C6OA 3LBZA 2P1QA 2YY9A 2R9RB 4W9HH 3ZTDB 4JGHC 2OVRA 3V7DA 3ZKJB 4B9KE 3M52A 1R2BA 4U2MA 3DRZA 5HYWB 1LDKD 5A15A 2A79B 4J8ZA 1NN7A 3C6PA 4EOZA 3I3NA 1S1GA 2ASSA 3E4UA 4W9CB 4JTDB 4BKSB 3ZUNB 1QDWA 1FQVB 3FKCA 1FS1B 3HVEB 4W9GB 4U77A 5H7HA 3M8VA 1LM8C 4CRHA 4W9IB 4ZOUA 1T1DA 4APFA 3B84A 4U2NA 3BIMA 3HQIA 3M4TA 1EODA 3HVEA 2P1PA 3HTMA 4B9KB 3OHVA 5FTAA 4W9EB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2OVP A;  4CXI A;  5BXD A;  3ZTC B;  5HZG C;  3OGK A;  2VKP A;  5EUP A;  3ZRC B;  3L2O A;  5IBK A;  3C6N A;  2AST A;  1EOF A;  3HU6 A;  3DCG B;  5JH5 B;  4W9D B;  4HXI A;  1EOE A;  3GA1 A;  4BGC A;  5LLI B;  4I6J C;  2P1O A;  4AWJ B;  2JZ3 C;  2MA9 C;  5BXH A;  5DAF A;  4BKT B;  4B95 B;  4W9H B;  2IHC A;  3MKS A;  3M5B A;  4AJY C;  2Q81 A;  1LQB B;  4W9F B;  1FS2 B;  5BXB A;  3LUT B;  2NN2 A;  4UYI A;  2IF5 A;  1P22 B;  1R28 A;  2E32 B;  3ZRF B;  1QDV A;  1EXB E;  1NEX A;  3WSO B;  3OGM A;  4N9F 5;  5BO4 C;  2I2R A;  1HV2 A;  2P1N A;  5H7G A;  1VCB B;  4JTA B;  4W9K B;  4CXJ A;  2C9W C;  3OGL A;  2FNJ C;  4UIJ A;  2IZV C;  4WQO C;  3ZNG B;  3KVT A;  4AP2 A;  4W9J B;  4CXT A;  1CS3 A;  3OHU A;  4W9L B;  3LNM B;  4CP3 A;  2NZ0 B;  1R29 A;  2P1M A;  2OVQ A;  1A68 A;  2VPK A;  2E31 B;  2PPI A;  1BUO A;  4JTC B;  1DSX A;  5DAD A;  5A6R A;  2Z8H A;  3C6O A;  3LBZ A;  2P1Q A;  2YY9 A;  2R9R B;  4W9H H;  3ZTD B;  4JGH C;  2OVR A;  3V7D A;  3ZKJ B;  4B9K E;  3M52 A;  1R2B A;  4U2M A;  3DRZ A;  5HYW B;  1LDK D;  5A15 A;  2A79 B;  4J8Z A;  1NN7 A;  3C6P A;  4EOZ A;  3I3N A;  1S1G A;  2ASS A;  3E4U A;  4W9C B;  4JTD B;  4BKS B;  3ZUN B;  1QDW A;  1FQV B;  3FKC A;  1FS1 B;  3HVE B;  4W9G B;  4U77 A;  5H7H A;  3M8V A;  1LM8 C;  4CRH A;  4W9I B;  4ZOU A;  1T1D A;  4APF A;  3B84 A;  4U2N A;  3BIM A;  3HQI A;  3M4T A;  1EOD A;  3HVE A;  2P1P A;  3HTM A;  4B9K B;  3OHV A;  5FTA A;  4W9E B; 
#chains in the Genus database with same CATH topology
 2OVP A;  4CXI A;  5BXD A;  3ZTC B;  5HZG C;  3OGK A;  2VKP A;  5EUP A;  3ZRC B;  3L2O A;  5IBK A;  3C6N A;  2AST A;  1EOF A;  3HU6 A;  3DCG B;  5JH5 B;  4W9D B;  4HXI A;  1EOE A;  3GA1 A;  4BGC A;  3DRY A;  5LLI B;  4I6J C;  2P1O A;  4AWJ B;  2JZ3 C;  2MA9 C;  5BXH A;  5DAF A;  4BKT B;  4B95 B;  4W9H B;  2IHC A;  3MKS A;  3M5B A;  4AJY C;  2Q81 A;  1LQB B;  4W9F B;  1FS2 B;  5BXB A;  3LUT B;  2NN2 A;  4UYI A;  2IF5 A;  1P22 B;  1R28 A;  2E32 B;  3ZRF B;  1QDV A;  1EXB E;  1NEX A;  3WSO B;  3OGM A;  4N9F 5;  5BO4 C;  2I2R A;  1HV2 A;  2P1N A;  5H7G A;  1VCB B;  4JTA B;  4W9K B;  4YY8 A;  4CXJ A;  2C9W C;  3OGL A;  2FNJ C;  4UIJ A;  2IZV C;  4WQO C;  3ZNG B;  3KVT A;  4AP2 A;  4W9J B;  4CXT A;  1CS3 A;  3OHU A;  4W9L B;  3LNM B;  4CP3 A;  2NZ0 B;  4ZGC A;  1R29 A;  2P1M A;  2OVQ A;  1A68 A;  2VPK A;  3DRX A;  2E31 B;  2PPI A;  1BUO A;  4JTC B;  1DSX A;  5DAD A;  5A6R A;  2Z8H A;  3C6O A;  3LBZ A;  2P1Q A;  2YY9 A;  2R9R B;  4W9H H;  3ZTD B;  4JGH C;  2OVR A;  3V7D A;  3ZKJ B;  4B9K E;  3M52 A;  1R2B A;  4U2M A;  3DRZ A;  5HYW B;  1LDK D;  5A15 A;  2A79 B;  4J8Z A;  1NN7 A;  3C6P A;  4EOZ A;  3I3N A;  1S1G A;  2ASS A;  3E4U A;  4W9C B;  4JTD B;  4BKS B;  3ZUN B;  1QDW A;  1FQV B;  3FKC A;  1FS1 B;  3HVE B;  4W9G B;  4U77 A;  5H7H A;  3M8V A;  1LM8 C;  4CRH A;  4W9I B;  4ZOU A;  1T1D A;  4APF A;  3B84 A;  4U2N A;  3BIM A;  3HQI A;  3M4T A;  1EOD A;  3HVE A;  2P1P A;  3HTM A;  4B9K B;  3OHV A;  5FTA A;  4W9E B; 
#chains in the Genus database with same CATH homology
 2OVP A;  4CXI A;  5BXD A;  3ZTC B;  5HZG C;  3OGK A;  2VKP A;  5EUP A;  3ZRC B;  3L2O A;  5IBK A;  3C6N A;  2AST A;  1EOF A;  3HU6 A;  3DCG B;  5JH5 B;  4W9D B;  4HXI A;  1EOE A;  3GA1 A;  4BGC A;  3DRY A;  5LLI B;  4I6J C;  2P1O A;  4AWJ B;  2JZ3 C;  2MA9 C;  5BXH A;  5DAF A;  4BKT B;  4B95 B;  4W9H B;  2IHC A;  3MKS A;  3M5B A;  4AJY C;  2Q81 A;  1LQB B;  4W9F B;  1FS2 B;  5BXB A;  3LUT B;  2NN2 A;  4UYI A;  2IF5 A;  1P22 B;  1R28 A;  2E32 B;  3ZRF B;  1QDV A;  1EXB E;  1NEX A;  3WSO B;  3OGM A;  4N9F 5;  5BO4 C;  2I2R A;  1HV2 A;  2P1N A;  5H7G A;  1VCB B;  4JTA B;  4W9K B;  4YY8 A;  4CXJ A;  2C9W C;  3OGL A;  2FNJ C;  4UIJ A;  2IZV C;  4WQO C;  3ZNG B;  3KVT A;  4AP2 A;  4W9J B;  4CXT A;  1CS3 A;  3OHU A;  4W9L B;  3LNM B;  4CP3 A;  2NZ0 B;  4ZGC A;  1R29 A;  2P1M A;  2OVQ A;  1A68 A;  2VPK A;  3DRX A;  2E31 B;  2PPI A;  1BUO A;  4JTC B;  1DSX A;  5DAD A;  5A6R A;  2Z8H A;  3C6O A;  3LBZ A;  2P1Q A;  2YY9 A;  2R9R B;  4W9H H;  3ZTD B;  4JGH C;  2OVR A;  3V7D A;  3ZKJ B;  4B9K E;  3M52 A;  1R2B A;  4U2M A;  3DRZ A;  5HYW B;  1LDK D;  5A15 A;  2A79 B;  4J8Z A;  1NN7 A;  3C6P A;  4EOZ A;  3I3N A;  1S1G A;  2ASS A;  3E4U A;  4W9C B;  4JTD B;  4BKS B;  3ZUN B;  1QDW A;  1FQV B;  3FKC A;  1FS1 B;  3HVE B;  4W9G B;  4U77 A;  5H7H A;  3M8V A;  1LM8 C;  4CRH A;  4W9I B;  4ZOU A;  1T1D A;  4APF A;  3B84 A;  4U2N A;  3BIM A;  3HQI A;  3M4T A;  1EOD A;  3HVE A;  2P1P A;  3HTM A;  4B9K B;  3OHV A;  5FTA A;  4W9E B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OGMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations