3P0C | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	111
structure length	111
Chain Sequence	NLYFQSMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFYE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Homo sapiens
publication title	Crystal structure of Nischarin PX-domain rcsb
molecule keywords	Nischarin
total genus	30
structure length	111
sequence length	111
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-09-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	3p0cA00

4ON3A 1XTEA 3P0CA 1XTNA 2REDA 3DYTA 2RAIA 3HPBA 3LUIA 1O7KA 4P2JA 4PQPA 4AZ9A 2YPSA 4IKDA 4P2IA 2V14A 4IKBB 4IKBA 2L73A 2RAKA 2AR5A 2CZOA 3IQ2A 4HASA 1OCUA 4BGJA 4PQOA 2REAA 1OCSA 1KQ6A 2V6VA 2WWEA 1KMDA 2I4KA 2CSKA 2DYBA 2ETTA 4OXWA 2RAJA 1H6HA 3HPCX 4PZGA 4AKVA 1GD5A 3FOGA 2IWLX
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4ON3 A;  1XTE A;  3P0C A;  1XTN A;  2RED A;  3DYT A;  2RAI A;  3HPB A;  3LUI A;  1O7K A;  4P2J A;  4PQP A;  4AZ9 A;  2YPS A;  4IKD A;  4P2I A;  2V14 A;  4IKB B;  4IKB A;  2L73 A;  2RAK A;  2AR5 A;  2CZO A;  3IQ2 A;  4HAS A;  1OCU A;  4BGJ A;  4PQO A;  2REA A;  1OCS A;  1KQ6 A;  2V6V A;  2WWE A;  1KMD A;  2I4K A;  2CSK A;  2DYB A;  2ETT A;  4OXW A;  2RAJ A;  1H6H A;  3HPC X;  4PZG A;  4AKV A;  1GD5 A;  3FOG A;  2IWL X; 
#chains in the Genus database with same CATH topology
 4ON3 A;  1XTE A;  3P0C A;  1XTN A;  2RED A;  3DYT A;  2RAI A;  3HPB A;  3LUI A;  1O7K A;  4P2J A;  4PQP A;  4AZ9 A;  2YPS A;  4IKD A;  4P2I A;  2V14 A;  4IKB B;  4IKB A;  2L73 A;  2RAK A;  2AR5 A;  2CZO A;  3IQ2 A;  4HAS A;  1OCU A;  4BGJ A;  4PQO A;  2REA A;  1OCS A;  1KQ6 A;  2V6V A;  2WWE A;  1KMD A;  2I4K A;  2CSK A;  2DYB A;  2ETT A;  4OXW A;  2RAJ A;  1H6H A;  3HPC X;  4PZG A;  4AKV A;  1GD5 A;  3FOG A;  2IWL X; 
#chains in the Genus database with same CATH homology
 4ON3 A;  1XTE A;  3P0C A;  1XTN A;  2RED A;  3DYT A;  2RAI A;  3HPB A;  3LUI A;  1O7K A;  4P2J A;  4PQP A;  4AZ9 A;  2YPS A;  4IKD A;  4P2I A;  2V14 A;  4IKB B;  4IKB A;  2L73 A;  2RAK A;  2AR5 A;  2CZO A;  3IQ2 A;  4HAS A;  1OCU A;  4BGJ A;  4PQO A;  2REA A;  1OCS A;  1KQ6 A;  2V6V A;  2WWE A;  1KMD A;  2I4K A;  2CSK A;  2DYB A;  2ETT A;  4OXW A;  2RAJ A;  1H6H A;  3HPC X;  4PZG A;  4AKV A;  1GD5 A;  3FOG A;  2IWL X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3P0CA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN