3UTNX

Crystal structure of tum1 protein from saccharomyces cerevisiae
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
304
structure length
304
Chain Sequence
MPLFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNFNQYREFKYPLDSSKVAAFSPYPKSHYESSESFQDKEIVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGPEWIAENRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the Tum1 protein from the yeast Saccharomyces cerevisiae.
pubmed rcsb
molecule tags Transferase
source organism Saccharomyces cerevisiae
molecule keywords Thiosulfate sulfurtransferase TUM1
total genus 109
structure length 304
sequence length 304
ec nomenclature ec 2.8.1.1: Thiosulfate sulfurtransferase.
pdb deposition date 2011-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00581 Rhodanese Rhodanese-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 3utnX02
3.40.250.10 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Rhodanese-like domain 3utnX01
2HHGA 5HBLA 2A2KA 3FOJA 4JGTA 1H4MX 3GK5A 2FSXA 1YMDA 2MRMA 1URHA 2J6PA 3TG3A 1ORBA 3FLHA 2EG4A 1OKGA 2EG4B 2WLXA 3UTNX 3IWHA 2OUCA 3ILMA 2KL3A 2JTSA 1CWSA 3R2UA 3NTDA 3HWIA 4WH7A 1TQ1A 2VSWA 1BOHA 3OLHA 1GN0A 2JTQA 4F67A 3NTAA 3D1PA 1YMKA 5LAOA 3TG1B 2DCQA 2MOLA 1CWTA 2WLRA 3I2VA 3ICSA 3G5JA 1CWRA 2K0ZA 3ICTA 1YM9A 3FNJA 5HBOA 3OP3A 4WH9A 2UZQA 5HPAA 3IPPA 1GMXA 3IPOA 1RHDA 3NT6A 1DP2A 2GWFA 3K9RA 1WV9A 3NHVA 1UARA 2MOIA 1QB0A 5LAMA 3ICRA 1C25A 3F4AA 4OCGA 2JTRA 1RHSA 1WHBA 1YMLA 1E0CA 1HZMA 3I3UA 3HIXA 2EG3A 1YT8A 2IFDA 2IFVA 3FS5A 3AAYA 3TP9A 1VEEA 1YS0A 2ORAA 3HZUA 5HBPA 3MZZA 1H4KX 1T3KA 3AAXA 5HBQA 3O3WA 3P3AA 1QXNA 1BOIA
chains in the Genus database with same CATH superfamily
2HHGA 5HBLA 2A2KA 3FOJA 4JGTA 1H4MX 3GK5A 2FSXA 1YMDA 2MRMA 1URHA 2J6PA 3TG3A 1ORBA 3FLHA 2EG4A 1OKGA 2EG4B 2WLXA 3UTNX 3IWHA 2OUCA 3ILMA 2KL3A 2JTSA 1CWSA 3R2UA 3NTDA 3HWIA 4WH7A 1TQ1A 2VSWA 1BOHA 3OLHA 1GN0A 2JTQA 4F67A 3NTAA 3D1PA 1YMKA 5LAOA 3TG1B 2DCQA 2MOLA 1CWTA 2WLRA 3I2VA 3ICSA 3G5JA 1CWRA 2K0ZA 3ICTA 1YM9A 3FNJA 5HBOA 3OP3A 4WH9A 2UZQA 5HPAA 3IPPA 1GMXA 3IPOA 1RHDA 3NT6A 1DP2A 2GWFA 3K9RA 1WV9A 3NHVA 1UARA 2MOIA 1QB0A 5LAMA 3ICRA 1C25A 3F4AA 4OCGA 2JTRA 1RHSA 1WHBA 1YMLA 1E0CA 1HZMA 3I3UA 3HIXA 2EG3A 1YT8A 2IFDA 2IFVA 3FS5A 3AAYA 3TP9A 1VEEA 1YS0A 2ORAA 3HZUA 5HBPA 3MZZA 1H4KX 1T3KA 3AAXA 5HBQA 3O3WA 2Q82A 3P3AA 1QXNA 1BOIA
chains in the Genus database with same CATH topology
2HHGA 5HBLA 2A2KA 3FOJA 4JGTA 1H4MX 3GK5A 2FSXA 1YMDA 2MRMA 1URHA 2J6PA 3TG3A 1ORBA 3FLHA 2EG4A 1OKGA 2EG4B 2WLXA 3UTNX 3IWHA 2OUCA 3ILMA 2KL3A 2JTSA 1CWSA 3R2UA 3NTDA 3HWIA 4WH7A 1TQ1A 2VSWA 1BOHA 3OLHA 1GN0A 2JTQA 4F67A 3NTAA 3D1PA 1YMKA 5LAOA 3TG1B 2DCQA 2MOLA 1CWTA 2WLRA 3I2VA 3ICSA 3G5JA 1CWRA 2K0ZA 3ICTA 1YM9A 3FNJA 5HBOA 3OP3A 4WH9A 2UZQA 5HPAA 3IPPA 1GMXA 3IPOA 1RHDA 3NT6A 1DP2A 2GWFA 3K9RA 1WV9A 3NHVA 1UARA 2MOIA 1QB0A 5LAMA 3ICRA 1C25A 3F4AA 4OCGA 2JTRA 1RHSA 1WHBA 1YMLA 1E0CA 1HZMA 3I3UA 3HIXA 2EG3A 1YT8A 2IFDA 2IFVA 3FS5A 3AAYA 3TP9A 1VEEA 1YS0A 2ORAA 3HZUA 5HBPA 3MZZA 1H4KX 1T3KA 3AAXA 5HBQA 3O3WA 3P3AA 1QXNA 1BOIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HHG A;  5HBL A;  2A2K A;  3FOJ A;  4JGT A;  1H4M X;  3GK5 A;  2FSX A;  1YMD A;  2MRM A;  1URH A;  2J6P A;  3TG3 A;  1ORB A;  3FLH A;  2EG4 A;  1OKG A;  2EG4 B;  2WLX A;  3UTN X;  3IWH A;  2OUC A;  3ILM A;  2KL3 A;  2JTS A;  1CWS A;  3R2U A;  3NTD A;  3HWI A;  4WH7 A;  1TQ1 A;  2VSW A;  1BOH A;  3OLH A;  1GN0 A;  2JTQ A;  4F67 A;  3NTA A;  3D1P A;  1YMK A;  5LAO A;  3TG1 B;  2DCQ A;  2MOL A;  1CWT A;  2WLR A;  3I2V A;  3ICS A;  3G5J A;  1CWR A;  2K0Z A;  3ICT A;  1YM9 A;  3FNJ A;  5HBO A;  3OP3 A;  4WH9 A;  2UZQ A;  5HPA A;  3IPP A;  1GMX A;  3IPO A;  1RHD A;  3NT6 A;  1DP2 A;  2GWF A;  3K9R A;  1WV9 A;  3NHV A;  1UAR A;  2MOI A;  1QB0 A;  5LAM A;  3ICR A;  1C25 A;  3F4A A;  4OCG A;  2JTR A;  1RHS A;  1WHB A;  1YML A;  1E0C A;  1HZM A;  3I3U A;  3HIX A;  2EG3 A;  1YT8 A;  2IFD A;  2IFV A;  3FS5 A;  3AAY A;  3TP9 A;  1VEE A;  1YS0 A;  2ORA A;  3HZU A;  5HBP A;  3MZZ A;  1H4K X;  1T3K A;  3AAX A;  5HBQ A;  3O3W A;  3P3A A;  1QXN A;  1BOI A; 
#chains in the Genus database with same CATH topology
 2HHG A;  5HBL A;  2A2K A;  3FOJ A;  4JGT A;  1H4M X;  3GK5 A;  2FSX A;  1YMD A;  2MRM A;  1URH A;  2J6P A;  3TG3 A;  1ORB A;  3FLH A;  2EG4 A;  1OKG A;  2EG4 B;  2WLX A;  3UTN X;  3IWH A;  2OUC A;  3ILM A;  2KL3 A;  2JTS A;  1CWS A;  3R2U A;  3NTD A;  3HWI A;  4WH7 A;  1TQ1 A;  2VSW A;  1BOH A;  3OLH A;  1GN0 A;  2JTQ A;  4F67 A;  3NTA A;  3D1P A;  1YMK A;  5LAO A;  3TG1 B;  2DCQ A;  2MOL A;  1CWT A;  2WLR A;  3I2V A;  3ICS A;  3G5J A;  1CWR A;  2K0Z A;  3ICT A;  1YM9 A;  3FNJ A;  5HBO A;  3OP3 A;  4WH9 A;  2UZQ A;  5HPA A;  3IPP A;  1GMX A;  3IPO A;  1RHD A;  3NT6 A;  1DP2 A;  2GWF A;  3K9R A;  1WV9 A;  3NHV A;  1UAR A;  2MOI A;  1QB0 A;  5LAM A;  3ICR A;  1C25 A;  3F4A A;  4OCG A;  2JTR A;  1RHS A;  1WHB A;  1YML A;  1E0C A;  1HZM A;  3I3U A;  3HIX A;  2EG3 A;  1YT8 A;  2IFD A;  2IFV A;  3FS5 A;  3AAY A;  3TP9 A;  1VEE A;  1YS0 A;  2ORA A;  3HZU A;  5HBP A;  3MZZ A;  1H4K X;  1T3K A;  3AAX A;  5HBQ A;  3O3W A;  2Q82 A;  3P3A A;  1QXN A;  1BOI A; 
#chains in the Genus database with same CATH homology
 2HHG A;  5HBL A;  2A2K A;  3FOJ A;  4JGT A;  1H4M X;  3GK5 A;  2FSX A;  1YMD A;  2MRM A;  1URH A;  2J6P A;  3TG3 A;  1ORB A;  3FLH A;  2EG4 A;  1OKG A;  2EG4 B;  2WLX A;  3UTN X;  3IWH A;  2OUC A;  3ILM A;  2KL3 A;  2JTS A;  1CWS A;  3R2U A;  3NTD A;  3HWI A;  4WH7 A;  1TQ1 A;  2VSW A;  1BOH A;  3OLH A;  1GN0 A;  2JTQ A;  4F67 A;  3NTA A;  3D1P A;  1YMK A;  5LAO A;  3TG1 B;  2DCQ A;  2MOL A;  1CWT A;  2WLR A;  3I2V A;  3ICS A;  3G5J A;  1CWR A;  2K0Z A;  3ICT A;  1YM9 A;  3FNJ A;  5HBO A;  3OP3 A;  4WH9 A;  2UZQ A;  5HPA A;  3IPP A;  1GMX A;  3IPO A;  1RHD A;  3NT6 A;  1DP2 A;  2GWF A;  3K9R A;  1WV9 A;  3NHV A;  1UAR A;  2MOI A;  1QB0 A;  5LAM A;  3ICR A;  1C25 A;  3F4A A;  4OCG A;  2JTR A;  1RHS A;  1WHB A;  1YML A;  1E0C A;  1HZM A;  3I3U A;  3HIX A;  2EG3 A;  1YT8 A;  2IFD A;  2IFV A;  3FS5 A;  3AAY A;  3TP9 A;  1VEE A;  1YS0 A;  2ORA A;  3HZU A;  5HBP A;  3MZZ A;  1H4K X;  1T3K A;  3AAX A;  5HBQ A;  3O3W A;  3P3A A;  1QXN A;  1BOI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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