3V7DA

Crystal structure of scskp1-sccdc4-psic1 peptide complex
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
158
structure length
139
Chain Sequence
TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRREN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH2 (27-34)S1 (5-9)AH1 (20-24)AH3 (84-97)EMPTYS3 (76-78)TII1 (79-82)AH4 (118-124)AH5 (128-141)S2 (15-19)TI1 (10-13)TIV1 (24-27)TI2 (97-100)Updating...
connected with : NaN
molecule tags Cell cycle
source organism Saccharomyces cerevisiae
publication title Composite low affinity interactions dictate recognition of the cyclin-dependent kinase inhibitor Sic1 by the SCFCdc4 ubiquitin ligase.
pubmed doi rcsb
molecule keywords Suppressor of kinetochore protein 1
total genus 47
structure length 139
sequence length 158
chains with identical sequence C
ec nomenclature
pdb deposition date 2011-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01466 Skp1 Skp1 family, dimerisation domain
A PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 3v7dA00
1CS3A 3C6NA 3M52A 2Q81A 3ZUNB 1HV2A 4W9DB 2P1OA 3KVTA 3ZTCB 1R29A 2VKPA 4ZOUA 3OHVA 4W9FB 2NZ0B 5H7GA 4U77A 2R9RB 2P1NA 2VPKA 4BGCA 1A68A 2E32B 5BO4C 5EUPA 1QDWA 2IZVC 4JTCB 4CXIA 1S1GA 3M4TA 1NEXA 4I6JC 2IF5A 2Z8HA 1EOFA 5HYWB 3M8VA 4U2NA 2P1QA 5IBKA 1DSXA 2E31B 2A79B 4CXJA 4JTDB 3ZRCB 3BIMA 1FS1B 4WQOC 4W9HB 3M5BA 4N9F5 3DRZA 3LBZA 3ZTDB 3HVEA 2C9WC 1LDKD 3OHUA 2I2RA 2P1PA 3HVEB 5FTAA 5BXBA 4EOZA 4BKTB 4W9IB 3OGLA 2FNJC 4AJYC 4CRHA 3OGKA 1R2BA 5JH5B 1EODA 3E4UA 5H7HA 1QDVA 2YY9A 4APFA 4W9CB 2OVPA 1FS2B 3HQIA 3C6PA 1EOEA 4AWJB 4CXTA 2P1MA 4JGHC 4B9KE 4W9LB 1FQVB 3ZRFB 1BUOA 3LNMB 5LLIB 4W9EB 4HXIA 5DADA 3HU6A 4J8ZA 5A15A 2ASSA 1EXBE 1VCBB 2IHCA 3HTMA 3MKSA 2NN2A 3WSOB 5BXHA 4W9GB 4UYIA 3V7DA 3LUTB 4BKSB 5DAFA 3GA1A 4W9HH 3I3NA 4W9JB 1NN7A 3C6OA 4CP3A 1R28A 2OVQA 3FKCA 1LQBB 4W9KB 2OVRA 1T1DA 2MA9C 3ZKJB 4B95B 4UIJA 3DCGB 3L2OA 4AP2A 2ASTA 4B9KB 5HZGC 2JZ3C 2PPIA 3OGMA 3ZNGB 1P22B 4U2MA 5BXDA 1LM8C 4JTAB 5A6RA 3B84A
chains in the Genus database with same CATH superfamily
1CS3A 3C6NA 3M52A 2Q81A 3ZUNB 1HV2A 4W9DB 2P1OA 3KVTA 3ZTCB 1R29A 2VKPA 4ZOUA 3OHVA 4W9FB 2NZ0B 5H7GA 4U77A 2R9RB 2P1NA 2VPKA 4BGCA 1A68A 2E32B 5BO4C 5EUPA 1QDWA 3DRYA 2IZVC 4JTCB 4CXIA 1S1GA 3M4TA 1NEXA 4I6JC 2IF5A 2Z8HA 1EOFA 5HYWB 3M8VA 4U2NA 2P1QA 5IBKA 1DSXA 2E31B 2A79B 4CXJA 4JTDB 3ZRCB 3BIMA 1FS1B 4WQOC 4W9HB 3M5BA 4N9F5 3DRZA 3LBZA 3DRXA 3ZTDB 3HVEA 2C9WC 1LDKD 3OHUA 2I2RA 2P1PA 3HVEB 5FTAA 5BXBA 4EOZA 4BKTB 4W9IB 3OGLA 2FNJC 4AJYC 4CRHA 3OGKA 1R2BA 5JH5B 1EODA 3E4UA 5H7HA 1QDVA 2YY9A 4APFA 4W9CB 2OVPA 1FS2B 3HQIA 3C6PA 1EOEA 4AWJB 4CXTA 2P1MA 4JGHC 4B9KE 4W9LB 1FQVB 3ZRFB 4ZGCA 1BUOA 3LNMB 5LLIB 4W9EB 4HXIA 5DADA 3HU6A 4J8ZA 5A15A 2ASSA 1EXBE 1VCBB 2IHCA 3HTMA 3MKSA 2NN2A 3WSOB 5BXHA 4W9GB 4UYIA 3V7DA 3LUTB 4BKSB 5DAFA 3GA1A 4W9HH 3I3NA 4W9JB 1NN7A 3C6OA 4CP3A 1R28A 2OVQA 3FKCA 1LQBB 4W9KB 2OVRA 1T1DA 2MA9C 3ZKJB 4B95B 4UIJA 3DCGB 3L2OA 4AP2A 2ASTA 4B9KB 5HZGC 2JZ3C 2PPIA 3OGMA 3ZNGB 1P22B 4U2MA 5BXDA 1LM8C 4YY8A 4JTAB 5A6RA 3B84A
chains in the Genus database with same CATH topology
1CS3A 3C6NA 3M52A 2Q81A 3ZUNB 1HV2A 4W9DB 2P1OA 3KVTA 3ZTCB 1R29A 2VKPA 4ZOUA 3OHVA 4W9FB 2NZ0B 5H7GA 4U77A 2R9RB 2P1NA 2VPKA 4BGCA 1A68A 2E32B 5BO4C 5EUPA 1QDWA 3DRYA 2IZVC 4JTCB 4CXIA 1S1GA 3M4TA 1NEXA 4I6JC 2IF5A 2Z8HA 1EOFA 5HYWB 3M8VA 4U2NA 2P1QA 5IBKA 1DSXA 2E31B 2A79B 4CXJA 4JTDB 3ZRCB 3BIMA 1FS1B 4WQOC 4W9HB 3M5BA 4N9F5 3DRZA 3LBZA 3DRXA 3ZTDB 3HVEA 2C9WC 1LDKD 3OHUA 2I2RA 2P1PA 3HVEB 5FTAA 5BXBA 4EOZA 4BKTB 4W9IB 3OGLA 2FNJC 4AJYC 4CRHA 3OGKA 1R2BA 5JH5B 1EODA 3E4UA 5H7HA 1QDVA 2YY9A 4APFA 4W9CB 2OVPA 1FS2B 3HQIA 3C6PA 1EOEA 4AWJB 4CXTA 2P1MA 4JGHC 4B9KE 4W9LB 1FQVB 3ZRFB 4ZGCA 1BUOA 3LNMB 5LLIB 4W9EB 4HXIA 5DADA 3HU6A 4J8ZA 5A15A 2ASSA 1EXBE 1VCBB 2IHCA 3HTMA 3MKSA 2NN2A 3WSOB 5BXHA 4W9GB 4UYIA 3V7DA 3LUTB 4BKSB 5DAFA 3GA1A 4W9HH 3I3NA 4W9JB 1NN7A 3C6OA 4CP3A 1R28A 2OVQA 3FKCA 1LQBB 4W9KB 2OVRA 1T1DA 2MA9C 3ZKJB 4B95B 4UIJA 3DCGB 3L2OA 4AP2A 2ASTA 4B9KB 5HZGC 2JZ3C 2PPIA 3OGMA 3ZNGB 1P22B 4U2MA 5BXDA 1LM8C 4YY8A 4JTAB 5A6RA 3B84A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1CS3 A;  3C6N A;  3M52 A;  2Q81 A;  3ZUN B;  1HV2 A;  4W9D B;  2P1O A;  3KVT A;  3ZTC B;  1R29 A;  2VKP A;  4ZOU A;  3OHV A;  4W9F B;  2NZ0 B;  5H7G A;  4U77 A;  2R9R B;  2P1N A;  2VPK A;  4BGC A;  1A68 A;  2E32 B;  5BO4 C;  5EUP A;  1QDW A;  2IZV C;  4JTC B;  4CXI A;  1S1G A;  3M4T A;  1NEX A;  4I6J C;  2IF5 A;  2Z8H A;  1EOF A;  5HYW B;  3M8V A;  4U2N A;  2P1Q A;  5IBK A;  1DSX A;  2E31 B;  2A79 B;  4CXJ A;  4JTD B;  3ZRC B;  3BIM A;  1FS1 B;  4WQO C;  4W9H B;  3M5B A;  4N9F 5;  3DRZ A;  3LBZ A;  3ZTD B;  3HVE A;  2C9W C;  1LDK D;  3OHU A;  2I2R A;  2P1P A;  3HVE B;  5FTA A;  5BXB A;  4EOZ A;  4BKT B;  4W9I B;  3OGL A;  2FNJ C;  4AJY C;  4CRH A;  3OGK A;  1R2B A;  5JH5 B;  1EOD A;  3E4U A;  5H7H A;  1QDV A;  2YY9 A;  4APF A;  4W9C B;  2OVP A;  1FS2 B;  3HQI A;  3C6P A;  1EOE A;  4AWJ B;  4CXT A;  2P1M A;  4JGH C;  4B9K E;  4W9L B;  1FQV B;  3ZRF B;  1BUO A;  3LNM B;  5LLI B;  4W9E B;  4HXI A;  5DAD A;  3HU6 A;  4J8Z A;  5A15 A;  2ASS A;  1EXB E;  1VCB B;  2IHC A;  3HTM A;  3MKS A;  2NN2 A;  3WSO B;  5BXH A;  4W9G B;  4UYI A;  3V7D A;  3LUT B;  4BKS B;  5DAF A;  3GA1 A;  4W9H H;  3I3N A;  4W9J B;  1NN7 A;  3C6O A;  4CP3 A;  1R28 A;  2OVQ A;  3FKC A;  1LQB B;  4W9K B;  2OVR A;  1T1D A;  2MA9 C;  3ZKJ B;  4B95 B;  4UIJ A;  3DCG B;  3L2O A;  4AP2 A;  2AST A;  4B9K B;  5HZG C;  2JZ3 C;  2PPI A;  3OGM A;  3ZNG B;  1P22 B;  4U2M A;  5BXD A;  1LM8 C;  4JTA B;  5A6R A;  3B84 A; 
#chains in the Genus database with same CATH topology
 1CS3 A;  3C6N A;  3M52 A;  2Q81 A;  3ZUN B;  1HV2 A;  4W9D B;  2P1O A;  3KVT A;  3ZTC B;  1R29 A;  2VKP A;  4ZOU A;  3OHV A;  4W9F B;  2NZ0 B;  5H7G A;  4U77 A;  2R9R B;  2P1N A;  2VPK A;  4BGC A;  1A68 A;  2E32 B;  5BO4 C;  5EUP A;  1QDW A;  3DRY A;  2IZV C;  4JTC B;  4CXI A;  1S1G A;  3M4T A;  1NEX A;  4I6J C;  2IF5 A;  2Z8H A;  1EOF A;  5HYW B;  3M8V A;  4U2N A;  2P1Q A;  5IBK A;  1DSX A;  2E31 B;  2A79 B;  4CXJ A;  4JTD B;  3ZRC B;  3BIM A;  1FS1 B;  4WQO C;  4W9H B;  3M5B A;  4N9F 5;  3DRZ A;  3LBZ A;  3DRX A;  3ZTD B;  3HVE A;  2C9W C;  1LDK D;  3OHU A;  2I2R A;  2P1P A;  3HVE B;  5FTA A;  5BXB A;  4EOZ A;  4BKT B;  4W9I B;  3OGL A;  2FNJ C;  4AJY C;  4CRH A;  3OGK A;  1R2B A;  5JH5 B;  1EOD A;  3E4U A;  5H7H A;  1QDV A;  2YY9 A;  4APF A;  4W9C B;  2OVP A;  1FS2 B;  3HQI A;  3C6P A;  1EOE A;  4AWJ B;  4CXT A;  2P1M A;  4JGH C;  4B9K E;  4W9L B;  1FQV B;  3ZRF B;  4ZGC A;  1BUO A;  3LNM B;  5LLI B;  4W9E B;  4HXI A;  5DAD A;  3HU6 A;  4J8Z A;  5A15 A;  2ASS A;  1EXB E;  1VCB B;  2IHC A;  3HTM A;  3MKS A;  2NN2 A;  3WSO B;  5BXH A;  4W9G B;  4UYI A;  3V7D A;  3LUT B;  4BKS B;  5DAF A;  3GA1 A;  4W9H H;  3I3N A;  4W9J B;  1NN7 A;  3C6O A;  4CP3 A;  1R28 A;  2OVQ A;  3FKC A;  1LQB B;  4W9K B;  2OVR A;  1T1D A;  2MA9 C;  3ZKJ B;  4B95 B;  4UIJ A;  3DCG B;  3L2O A;  4AP2 A;  2AST A;  4B9K B;  5HZG C;  2JZ3 C;  2PPI A;  3OGM A;  3ZNG B;  1P22 B;  4U2M A;  5BXD A;  1LM8 C;  4YY8 A;  4JTA B;  5A6R A;  3B84 A; 
#chains in the Genus database with same CATH homology
 1CS3 A;  3C6N A;  3M52 A;  2Q81 A;  3ZUN B;  1HV2 A;  4W9D B;  2P1O A;  3KVT A;  3ZTC B;  1R29 A;  2VKP A;  4ZOU A;  3OHV A;  4W9F B;  2NZ0 B;  5H7G A;  4U77 A;  2R9R B;  2P1N A;  2VPK A;  4BGC A;  1A68 A;  2E32 B;  5BO4 C;  5EUP A;  1QDW A;  3DRY A;  2IZV C;  4JTC B;  4CXI A;  1S1G A;  3M4T A;  1NEX A;  4I6J C;  2IF5 A;  2Z8H A;  1EOF A;  5HYW B;  3M8V A;  4U2N A;  2P1Q A;  5IBK A;  1DSX A;  2E31 B;  2A79 B;  4CXJ A;  4JTD B;  3ZRC B;  3BIM A;  1FS1 B;  4WQO C;  4W9H B;  3M5B A;  4N9F 5;  3DRZ A;  3LBZ A;  3DRX A;  3ZTD B;  3HVE A;  2C9W C;  1LDK D;  3OHU A;  2I2R A;  2P1P A;  3HVE B;  5FTA A;  5BXB A;  4EOZ A;  4BKT B;  4W9I B;  3OGL A;  2FNJ C;  4AJY C;  4CRH A;  3OGK A;  1R2B A;  5JH5 B;  1EOD A;  3E4U A;  5H7H A;  1QDV A;  2YY9 A;  4APF A;  4W9C B;  2OVP A;  1FS2 B;  3HQI A;  3C6P A;  1EOE A;  4AWJ B;  4CXT A;  2P1M A;  4JGH C;  4B9K E;  4W9L B;  1FQV B;  3ZRF B;  4ZGC A;  1BUO A;  3LNM B;  5LLI B;  4W9E B;  4HXI A;  5DAD A;  3HU6 A;  4J8Z A;  5A15 A;  2ASS A;  1EXB E;  1VCB B;  2IHC A;  3HTM A;  3MKS A;  2NN2 A;  3WSO B;  5BXH A;  4W9G B;  4UYI A;  3V7D A;  3LUT B;  4BKS B;  5DAF A;  3GA1 A;  4W9H H;  3I3N A;  4W9J B;  1NN7 A;  3C6O A;  4CP3 A;  1R28 A;  2OVQ A;  3FKC A;  1LQB B;  4W9K B;  2OVR A;  1T1D A;  2MA9 C;  3ZKJ B;  4B95 B;  4UIJ A;  3DCG B;  3L2O A;  4AP2 A;  2AST A;  4B9K B;  5HZG C;  2JZ3 C;  2PPI A;  3OGM A;  3ZNG B;  1P22 B;  4U2M A;  5BXD A;  1LM8 C;  4YY8 A;  4JTA B;  5A6R A;  3B84 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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