3WSO | Genus

Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	48
sequence length	162
structure length	139
Chain Sequence	MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDDPVPLPNVNAAILKKVIQWCTHHKDDPDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 139 atoms

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139 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ligase
source organism	Homo sapiens
publication title	The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3 pubmed doi rcsb
molecule keywords	F-box only protein 44
total genus	48
structure length	139
sequence length	162
ec nomenclature
pdb deposition date	2014-03-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01466	Skp1	Skp1 family, dimerisation domain
B	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	3wsoB00

5HYWB 4BKTB 2FNJC 4ZOUA 3BIMA 2Z8HA 4B9KB 3GA1A 4W9LB 4CXIA 1QDVA 3B84A 4BKSB 2NZ0B 2OVRA 4CP3A 3C6NA 2OVQA 3LBZA 3M4TA 3HVEB 4UYIA 3M5BA 5HZGC 2VKPA 1LDKD 2ASSA 1A68A 1R29A 2P1MA 5IBKA 1R2BA 4W9GB 5H7GA 5FTAA 1BUOA 5A15A 2OVPA 4UIJA 2ASTA 5DAFA 2I2RA 2P1NA 3LUTB 3C6PA 2E32B 3ZRFB 4U2MA 3HVEA 1VCBB 4I6JC 4CRHA 1EXBE 2MA9C 4U2NA 3ZRCB 1S1GA 2P1QA 3OHUA 4W9KB 4W9DB 4JTCB 5BXBA 4AWJB 3L2OA 3KVTA 5BXDA 4JTDB 1FS1B 4CXTA 4U77A 4APFA 1T1DA 3OGKA 1FQVB 4W9FB 1EOFA 5BXHA 2R9RB 3E4UA 4W9CB 4AP2A 2JZ3C 2P1PA 4AJYC 3WSOB 4W9HB 2Q81A 1P22B 3C6OA 4B95B 3DRZA 3M8VA 4W9EB 5DADA 5EUPA 3ZKJB 2IHCA 2IZVC 3ZNGB 3MKSA 1LQBB 3HU6A 1DSXA 3OHVA 4N9F5 2VPKA 3LNMB 4W9HH 1EODA 5JH5B 1LM8C 3ZTDB 5LLIB 4JGHC 4CXJA 1HV2A 2E31B 2C9WC 2NN2A 4JTAB 4W9IB 1EOEA 3M52A 4B9KE 3HQIA 3FKCA 1R28A 1QDWA 5H7HA 4WQOC 3V7DA 2PPIA 2YY9A 4BGCA 4W9JB 2P1OA 1NN7A 1NEXA 3OGLA 3I3NA 1FS2B 4EOZA 4J8ZA 5BO4C 2A79B 2IF5A 3DCGB 3ZTCB 3ZUNB 5A6RA 3OGMA 3HTMA 1CS3A 4HXIA
chains in the Genus database with same CATH superfamily

5HYWB 4BKTB 2FNJC 4ZOUA 3BIMA 2Z8HA 4B9KB 3GA1A 4W9LB 4CXIA 1QDVA 3B84A 4BKSB 2NZ0B 2OVRA 4CP3A 3C6NA 2OVQA 3LBZA 3M4TA 3HVEB 4UYIA 3M5BA 5HZGC 2VKPA 1LDKD 2ASSA 1A68A 1R29A 4YY8A 2P1MA 5IBKA 1R2BA 3DRYA 4W9GB 5H7GA 5FTAA 1BUOA 5A15A 2OVPA 4UIJA 2ASTA 5DAFA 2I2RA 2P1NA 3LUTB 3C6PA 2E32B 3ZRFB 4U2MA 3HVEA 1VCBB 4I6JC 4CRHA 1EXBE 2MA9C 4U2NA 3ZRCB 1S1GA 2P1QA 3OHUA 4W9KB 4W9DB 4JTCB 5BXBA 4AWJB 4ZGCA 3L2OA 3KVTA 5BXDA 4JTDB 1FS1B 4CXTA 4U77A 4APFA 1T1DA 3OGKA 1FQVB 3DRXA 4W9FB 1EOFA 5BXHA 2R9RB 3E4UA 4W9CB 4AP2A 2JZ3C 2P1PA 4AJYC 3WSOB 4W9HB 2Q81A 1P22B 3C6OA 4B95B 3DRZA 3M8VA 4W9EB 5DADA 5EUPA 3ZKJB 2IHCA 2IZVC 3ZNGB 3MKSA 1LQBB 3HU6A 1DSXA 3OHVA 4N9F5 2VPKA 3LNMB 4W9HH 1EODA 5JH5B 1LM8C 3ZTDB 5LLIB 4JGHC 4CXJA 1HV2A 2E31B 2C9WC 2NN2A 4JTAB 4W9IB 1EOEA 3M52A 4B9KE 3HQIA 3FKCA 1R28A 1QDWA 5H7HA 4WQOC 3V7DA 2PPIA 2YY9A 4BGCA 4W9JB 2P1OA 1NN7A 1NEXA 3OGLA 3I3NA 1FS2B 4EOZA 4J8ZA 5BO4C 2A79B 2IF5A 3DCGB 3ZTCB 3ZUNB 5A6RA 3OGMA 3HTMA 1CS3A 4HXIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5HYW B;  4BKT B;  2FNJ C;  4ZOU A;  3BIM A;  2Z8H A;  4B9K B;  3GA1 A;  4W9L B;  4CXI A;  1QDV A;  3B84 A;  4BKS B;  2NZ0 B;  2OVR A;  4CP3 A;  3C6N A;  2OVQ A;  3LBZ A;  3M4T A;  3HVE B;  4UYI A;  3M5B A;  5HZG C;  2VKP A;  1LDK D;  2ASS A;  1A68 A;  1R29 A;  2P1M A;  5IBK A;  1R2B A;  4W9G B;  5H7G A;  5FTA A;  1BUO A;  5A15 A;  2OVP A;  4UIJ A;  2AST A;  5DAF A;  2I2R A;  2P1N A;  3LUT B;  3C6P A;  2E32 B;  3ZRF B;  4U2M A;  3HVE A;  1VCB B;  4I6J C;  4CRH A;  1EXB E;  2MA9 C;  4U2N A;  3ZRC B;  1S1G A;  2P1Q A;  3OHU A;  4W9K B;  4W9D B;  4JTC B;  5BXB A;  4AWJ B;  3L2O A;  3KVT A;  5BXD A;  4JTD B;  1FS1 B;  4CXT A;  4U77 A;  4APF A;  1T1D A;  3OGK A;  1FQV B;  4W9F B;  1EOF A;  5BXH A;  2R9R B;  3E4U A;  4W9C B;  4AP2 A;  2JZ3 C;  2P1P A;  4AJY C;  3WSO B;  4W9H B;  2Q81 A;  1P22 B;  3C6O A;  4B95 B;  3DRZ A;  3M8V A;  4W9E B;  5DAD A;  5EUP A;  3ZKJ B;  2IHC A;  2IZV C;  3ZNG B;  3MKS A;  1LQB B;  3HU6 A;  1DSX A;  3OHV A;  4N9F 5;  2VPK A;  3LNM B;  4W9H H;  1EOD A;  5JH5 B;  1LM8 C;  3ZTD B;  5LLI B;  4JGH C;  4CXJ A;  1HV2 A;  2E31 B;  2C9W C;  2NN2 A;  4JTA B;  4W9I B;  1EOE A;  3M52 A;  4B9K E;  3HQI A;  3FKC A;  1R28 A;  1QDW A;  5H7H A;  4WQO C;  3V7D A;  2PPI A;  2YY9 A;  4BGC A;  4W9J B;  2P1O A;  1NN7 A;  1NEX A;  3OGL A;  3I3N A;  1FS2 B;  4EOZ A;  4J8Z A;  5BO4 C;  2A79 B;  2IF5 A;  3DCG B;  3ZTC B;  3ZUN B;  5A6R A;  3OGM A;  3HTM A;  1CS3 A;  4HXI A; 
#chains in the Genus database with same CATH topology
 5HYW B;  4BKT B;  2FNJ C;  4ZOU A;  3BIM A;  2Z8H A;  4B9K B;  3GA1 A;  4W9L B;  4CXI A;  1QDV A;  3B84 A;  4BKS B;  2NZ0 B;  2OVR A;  4CP3 A;  3C6N A;  2OVQ A;  3LBZ A;  3M4T A;  3HVE B;  4UYI A;  3M5B A;  5HZG C;  2VKP A;  1LDK D;  2ASS A;  1A68 A;  1R29 A;  4YY8 A;  2P1M A;  5IBK A;  1R2B A;  3DRY A;  4W9G B;  5H7G A;  5FTA A;  1BUO A;  5A15 A;  2OVP A;  4UIJ A;  2AST A;  5DAF A;  2I2R A;  2P1N A;  3LUT B;  3C6P A;  2E32 B;  3ZRF B;  4U2M A;  3HVE A;  1VCB B;  4I6J C;  4CRH A;  1EXB E;  2MA9 C;  4U2N A;  3ZRC B;  1S1G A;  2P1Q A;  3OHU A;  4W9K B;  4W9D B;  4JTC B;  5BXB A;  4AWJ B;  4ZGC A;  3L2O A;  3KVT A;  5BXD A;  4JTD B;  1FS1 B;  4CXT A;  4U77 A;  4APF A;  1T1D A;  3OGK A;  1FQV B;  3DRX A;  4W9F B;  1EOF A;  5BXH A;  2R9R B;  3E4U A;  4W9C B;  4AP2 A;  2JZ3 C;  2P1P A;  4AJY C;  3WSO B;  4W9H B;  2Q81 A;  1P22 B;  3C6O A;  4B95 B;  3DRZ A;  3M8V A;  4W9E B;  5DAD A;  5EUP A;  3ZKJ B;  2IHC A;  2IZV C;  3ZNG B;  3MKS A;  1LQB B;  3HU6 A;  1DSX A;  3OHV A;  4N9F 5;  2VPK A;  3LNM B;  4W9H H;  1EOD A;  5JH5 B;  1LM8 C;  3ZTD B;  5LLI B;  4JGH C;  4CXJ A;  1HV2 A;  2E31 B;  2C9W C;  2NN2 A;  4JTA B;  4W9I B;  1EOE A;  3M52 A;  4B9K E;  3HQI A;  3FKC A;  1R28 A;  1QDW A;  5H7H A;  4WQO C;  3V7D A;  2PPI A;  2YY9 A;  4BGC A;  4W9J B;  2P1O A;  1NN7 A;  1NEX A;  3OGL A;  3I3N A;  1FS2 B;  4EOZ A;  4J8Z A;  5BO4 C;  2A79 B;  2IF5 A;  3DCG B;  3ZTC B;  3ZUN B;  5A6R A;  3OGM A;  3HTM A;  1CS3 A;  4HXI A; 
#chains in the Genus database with same CATH homology
 5HYW B;  4BKT B;  2FNJ C;  4ZOU A;  3BIM A;  2Z8H A;  4B9K B;  3GA1 A;  4W9L B;  4CXI A;  1QDV A;  3B84 A;  4BKS B;  2NZ0 B;  2OVR A;  4CP3 A;  3C6N A;  2OVQ A;  3LBZ A;  3M4T A;  3HVE B;  4UYI A;  3M5B A;  5HZG C;  2VKP A;  1LDK D;  2ASS A;  1A68 A;  1R29 A;  4YY8 A;  2P1M A;  5IBK A;  1R2B A;  3DRY A;  4W9G B;  5H7G A;  5FTA A;  1BUO A;  5A15 A;  2OVP A;  4UIJ A;  2AST A;  5DAF A;  2I2R A;  2P1N A;  3LUT B;  3C6P A;  2E32 B;  3ZRF B;  4U2M A;  3HVE A;  1VCB B;  4I6J C;  4CRH A;  1EXB E;  2MA9 C;  4U2N A;  3ZRC B;  1S1G A;  2P1Q A;  3OHU A;  4W9K B;  4W9D B;  4JTC B;  5BXB A;  4AWJ B;  4ZGC A;  3L2O A;  3KVT A;  5BXD A;  4JTD B;  1FS1 B;  4CXT A;  4U77 A;  4APF A;  1T1D A;  3OGK A;  1FQV B;  3DRX A;  4W9F B;  1EOF A;  5BXH A;  2R9R B;  3E4U A;  4W9C B;  4AP2 A;  2JZ3 C;  2P1P A;  4AJY C;  3WSO B;  4W9H B;  2Q81 A;  1P22 B;  3C6O A;  4B95 B;  3DRZ A;  3M8V A;  4W9E B;  5DAD A;  5EUP A;  3ZKJ B;  2IHC A;  2IZV C;  3ZNG B;  3MKS A;  1LQB B;  3HU6 A;  1DSX A;  3OHV A;  4N9F 5;  2VPK A;  3LNM B;  4W9H H;  1EOD A;  5JH5 B;  1LM8 C;  3ZTD B;  5LLI B;  4JGH C;  4CXJ A;  1HV2 A;  2E31 B;  2C9W C;  2NN2 A;  4JTA B;  4W9I B;  1EOE A;  3M52 A;  4B9K E;  3HQI A;  3FKC A;  1R28 A;  1QDW A;  5H7H A;  4WQO C;  3V7D A;  2PPI A;  2YY9 A;  4BGC A;  4W9J B;  2P1O A;  1NN7 A;  1NEX A;  3OGL A;  3I3N A;  1FS2 B;  4EOZ A;  4J8Z A;  5BO4 C;  2A79 B;  2IF5 A;  3DCG B;  3ZTC B;  3ZUN B;  5A6R A;  3OGM A;  3HTM A;  1CS3 A;  4HXI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WSOB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations