4AZ9 | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	111
structure length	111
Chain Sequence	GTENLYFQSMEVYIPSFRYEESDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENEELPKLFLDFLNV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d03874b9124529dc5a24c7c/pdb.gz): 2004 ms

reading 111 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

111 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

Adding embedded #jmolscript: select ({0:110});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Crystal Structure of Phox Homology Domain of Human Sorting Nexin 24 rcsb
molecule keywords	SORTING NEXIN-24
total genus	29
structure length	111
sequence length	111
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-06-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	4az9A00

2L73A 2RAJA 2V6VA 2RAKA 2REAA 1KQ6A 3P0CA 2YPSA 2IWLX 3LUIA 1OCSA 4IKDA 2V14A 4ON3A 2DYBA 3HPCX 4PZGA 4AKVA 1GD5A 3DYTA 4P2IA 1O7KA 3FOGA 1XTEA 2CSKA 2REDA 1OCUA 2I4KA 1XTNA 4OXWA 1H6HA 4PQOA 4P2JA 2ETTA 4IKBA 4HASA 4PQPA 4BGJA 2AR5A 2CZOA 1KMDA 2WWEA 4IKBB 2RAIA 3HPBA 4AZ9A 3IQ2A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2L73 A;  2RAJ A;  2V6V A;  2RAK A;  2REA A;  1KQ6 A;  3P0C A;  2YPS A;  2IWL X;  3LUI A;  1OCS A;  4IKD A;  2V14 A;  4ON3 A;  2DYB A;  3HPC X;  4PZG A;  4AKV A;  1GD5 A;  3DYT A;  4P2I A;  1O7K A;  3FOG A;  1XTE A;  2CSK A;  2RED A;  1OCU A;  2I4K A;  1XTN A;  4OXW A;  1H6H A;  4PQO A;  4P2J A;  2ETT A;  4IKB A;  4HAS A;  4PQP A;  4BGJ A;  2AR5 A;  2CZO A;  1KMD A;  2WWE A;  4IKB B;  2RAI A;  3HPB A;  4AZ9 A;  3IQ2 A; 
#chains in the Genus database with same CATH topology
 2L73 A;  2RAJ A;  2V6V A;  2RAK A;  2REA A;  1KQ6 A;  3P0C A;  2YPS A;  2IWL X;  3LUI A;  1OCS A;  4IKD A;  2V14 A;  4ON3 A;  2DYB A;  3HPC X;  4PZG A;  4AKV A;  1GD5 A;  3DYT A;  4P2I A;  1O7K A;  3FOG A;  1XTE A;  2CSK A;  2RED A;  1OCU A;  2I4K A;  1XTN A;  4OXW A;  1H6H A;  4PQO A;  4P2J A;  2ETT A;  4IKB A;  4HAS A;  4PQP A;  4BGJ A;  2AR5 A;  2CZO A;  1KMD A;  2WWE A;  4IKB B;  2RAI A;  3HPB A;  4AZ9 A;  3IQ2 A; 
#chains in the Genus database with same CATH homology
 2L73 A;  2RAJ A;  2V6V A;  2RAK A;  2REA A;  1KQ6 A;  3P0C A;  2YPS A;  2IWL X;  3LUI A;  1OCS A;  4IKD A;  2V14 A;  4ON3 A;  2DYB A;  3HPC X;  4PZG A;  4AKV A;  1GD5 A;  3DYT A;  4P2I A;  1O7K A;  3FOG A;  1XTE A;  2CSK A;  2RED A;  1OCU A;  2I4K A;  1XTN A;  4OXW A;  1H6H A;  4PQO A;  4P2J A;  2ETT A;  4IKB A;  4HAS A;  4PQP A;  4BGJ A;  2AR5 A;  2CZO A;  1KMD A;  2WWE A;  4IKB B;  2RAI A;  3HPB A;  4AZ9 A;  3IQ2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4AZ9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations